Ggra5200.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5200.t1
Unique NameGgra5200.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:740982..742317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog598659.NAMH_0629
Preferred nameacd
Max annot lvl29547|Epsilonproteobacteria
KEGG rclassRC00419
KEGG koko:K01505
KEGG ReactionR00997
KEGG Pathwayko00270,map00270
Evalue1.65e-41
EggNOG OGsCOG2515@1|root,COG2515@2|Bacteria,1R87T@1224|Proteobacteria,42MPC@68525|delta/epsilon subdivisions,2YN3K@29547|Epsilonproteobacteria
EC3.5.99.7
Description1-aminocyclopropane-1-carboxylate deaminase
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5200Ggra5200Gracilaria gracilis GNS1m malegenetig00000069_pilon 740982..742317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5200.t1Ggra5200.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 740982..742317 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5200.t1.start1Ggra5200.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 740982..740984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5200.t1.CDS1Ggra5200.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 740982..741015 +
Ggra5200.t1.CDS2Ggra5200.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 741092..741109 +
Ggra5200.t1.CDS3Ggra5200.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 741214..742188 +
Ggra5200.t1.CDS4Ggra5200.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000069_pilon 742289..742317 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5200.t1.exon1Ggra5200.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 740982..741015 +
Ggra5200.t1.exon2Ggra5200.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 741092..741109 +
Ggra5200.t1.exon3Ggra5200.t1.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 741214..742188 +
Ggra5200.t1.exon4Ggra5200.t1.exon4Gracilaria gracilis GNS1m maleexontig00000069_pilon 742289..742317 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5200.t1.intron1Ggra5200.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 741016..741091 +
Ggra5200.t1.intron2Ggra5200.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 741110..741213 +
Ggra5200.t1.intron3Ggra5200.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000069_pilon 742189..742288 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5200.t1.stop1Ggra5200.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 742315..742317 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5200.t1 ID=Ggra5200.t1|Name=Ggra5200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=352bp
MDELKGNRGGGLKQVSDGIPTPVTPIRFRNRTVFVKRDDLLQFSNVTGSK
LRKFHSLFVDNALERYDYILSYGGAQSNAMLALAHLCKHVGKRFIYITRP
TPQRISYLRGNLRDAIEAGMEHVPIGLEAFRSGFTDTRPREIRDVALEVL
RDLGYKISSENSLFIPQGGAWTGAEHGIRVLAHELRSQIDQLRLDGRLAL
RKPILFLSSGTGTTAFYLQKHLQSHAKVVTVPVSGDERYLVKQIRWLDSY
ESNSEETMKTTDFPNILRPRLRSTFADVRPEKLAIWKELCRSTGGAFEFD
LVYAPKTWEEVMLAIQEGRLAAEGEDLIYYHSGGTEGNASMLDRFSRAGI
R*
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spliced messenger RNA

>Ggra5200.t1 ID=Ggra5200.t1|Name=Ggra5200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000069_pilon:740982..742317+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAATTGAAAGGAAACAGAGGCGGGGGCTTGAAACAAGTATCAGA
TGGGATACCTACTCCAGTTACGCCAATCAGATTCAGAAATCGAACCGTTT
TTGTTAAGCGGGATGATCTCTTGCAGTTTTCGAACGTGACTGGTAGCAAG
CTGCGTAAGTTTCACTCTCTTTTCGTCGATAATGCTTTAGAAAGATATGA
CTACATCCTTTCATACGGTGGCGCACAGTCCAATGCCATGCTTGCTCTGG
CTCATCTATGCAAACACGTTGGCAAGCGCTTCATATATATCACACGACCA
ACACCGCAAAGAATTAGTTATTTGAGAGGCAACTTACGTGATGCCATCGA
AGCTGGCATGGAGCATGTGCCAATTGGCCTGGAAGCTTTTCGGAGTGGCT
TCACAGACACGAGACCGCGAGAGATTAGAGATGTAGCGCTGGAAGTTCTC
CGGGATCTTGGGTACAAAATTTCTTCTGAGAACTCTCTTTTCATACCTCA
GGGCGGAGCATGGACCGGGGCTGAACACGGAATTCGAGTTTTGGCACATG
AACTTCGCAGCCAGATTGATCAACTGCGACTAGATGGTCGACTTGCACTA
AGAAAGCCAATCCTGTTTTTGTCTTCAGGAACGGGAACGACTGCCTTTTA
CCTTCAGAAGCATTTACAATCCCATGCAAAGGTAGTAACTGTTCCGGTGT
CAGGAGATGAGCGATACCTGGTGAAGCAAATCAGATGGCTAGATTCCTAT
GAGAGCAACTCCGAAGAAACCATGAAGACTACGGATTTCCCGAATATTCT
GCGACCCCGCTTACGCTCAACTTTTGCGGATGTAAGACCAGAGAAGCTTG
CGATATGGAAAGAGCTTTGTCGTTCTACAGGCGGTGCTTTTGAATTTGAC
CTTGTCTATGCTCCAAAAACGTGGGAAGAAGTGATGTTGGCGATTCAAGA
AGGTAGGCTTGCCGCCGAAGGAGAGGACTTGATATATTATCACTCAGGTG
GGACAGAAGGGAACGCTTCAATGCTTGACAGATTTTCTCGGGCTGGAATA
AGGTAG
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protein sequence of Ggra5200.t1

>Ggra5200.t1 ID=Ggra5200.t1|Name=Ggra5200.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MDELKGNRGGGLKQVSDGIPTPVTPIRFRNRTVFVKRDDLLQFSNVTGSK
LRKFHSLFVDNALERYDYILSYGGAQSNAMLALAHLCKHVGKRFIYITRP
TPQRISYLRGNLRDAIEAGMEHVPIGLEAFRSGFTDTRPREIRDVALEVL
RDLGYKISSENSLFIPQGGAWTGAEHGIRVLAHELRSQIDQLRLDGRLAL
RKPILFLSSGTGTTAFYLQKHLQSHAKVVTVPVSGDERYLVKQIRWLDSY
ESNSEETMKTTDFPNILRPRLRSTFADVRPEKLAIWKELCRSTGGAFEFD
LVYAPKTWEEVMLAIQEGRLAAEGEDLIYYHSGGTEGNASMLDRFSRAGI
R*
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mRNA from alignment at tig00000069_pilon:740982..742317+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5200.t1 ID=Ggra5200.t1|Name=Ggra5200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1336bp|location=Sequence derived from alignment at tig00000069_pilon:740982..742317+ (Gracilaria gracilis GNS1m male)
ATGGACGAATTGAAAGGAAACAGAGGCGGGGGCTGTGTCCAGCCGAGGCA
ATTCAACCTCCAGTTCATCAGCAACACTTCCGGAATAGCACTTTCAACTG
ATTGGCATAGTGAAACAAGTATCAGATGGTGCGTTGGAGTTAGCCATTCC
AGAAAATTATGTGGTCGTCGTGCTTTAAGCATGCATGATGCACCAAAAGC
TACCACGACTCAATACTCATTATTTCAAGCAGGGATACCTACTCCAGTTA
CGCCAATCAGATTCAGAAATCGAACCGTTTTTGTTAAGCGGGATGATCTC
TTGCAGTTTTCGAACGTGACTGGTAGCAAGCTGCGTAAGTTTCACTCTCT
TTTCGTCGATAATGCTTTAGAAAGATATGACTACATCCTTTCATACGGTG
GCGCACAGTCCAATGCCATGCTTGCTCTGGCTCATCTATGCAAACACGTT
GGCAAGCGCTTCATATATATCACACGACCAACACCGCAAAGAATTAGTTA
TTTGAGAGGCAACTTACGTGATGCCATCGAAGCTGGCATGGAGCATGTGC
CAATTGGCCTGGAAGCTTTTCGGAGTGGCTTCACAGACACGAGACCGCGA
GAGATTAGAGATGTAGCGCTGGAAGTTCTCCGGGATCTTGGGTACAAAAT
TTCTTCTGAGAACTCTCTTTTCATACCTCAGGGCGGAGCATGGACCGGGG
CTGAACACGGAATTCGAGTTTTGGCACATGAACTTCGCAGCCAGATTGAT
CAACTGCGACTAGATGGTCGACTTGCACTAAGAAAGCCAATCCTGTTTTT
GTCTTCAGGAACGGGAACGACTGCCTTTTACCTTCAGAAGCATTTACAAT
CCCATGCAAAGGTAGTAACTGTTCCGGTGTCAGGAGATGAGCGATACCTG
GTGAAGCAAATCAGATGGCTAGATTCCTATGAGAGCAACTCCGAAGAAAC
CATGAAGACTACGGATTTCCCGAATATTCTGCGACCCCGCTTACGCTCAA
CTTTTGCGGATGTAAGACCAGAGAAGCTTGCGATATGGAAAGAGCTTTGT
CGTTCTACAGGCGGTGCTTTTGAATTTGACCTTGTCTATGCTCCAAAAAC
GTGGGAAGAAGTGATGTTGGCGATTCAAGAAGGTAGGCTTGCCGCCGAAG
GAGAGGACTTGATATATTATCACTCAGGTGGGACAGAAGGGAACGCTTCA
ATGCTTGGTAAGATAACCGTGATAATTTTGGCGGGGACAGCTTCTCGAGC
TCACACTGGAAATCTGCTAACTATATCGACTCTCTTCACTGCATCAAACG
AGCATAGACAGATTTTCTCGGGCTGGAATAAGGTAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:740982..742317+

>Ggra5200.t1 ID=Ggra5200.t1|Name=Ggra5200.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000069_pilon:740982..742317+ (Gracilaria gracilis GNS1m male)
ATGGACGAATTGAAAGGAAACAGAGGCGGGGGCTTGAAACAAGTATCAGA
TGGGATACCTACTCCAGTTACGCCAATCAGATTCAGAAATCGAACCGTTT
TTGTTAAGCGGGATGATCTCTTGCAGTTTTCGAACGTGACTGGTAGCAAG
CTGCGTAAGTTTCACTCTCTTTTCGTCGATAATGCTTTAGAAAGATATGA
CTACATCCTTTCATACGGTGGCGCACAGTCCAATGCCATGCTTGCTCTGG
CTCATCTATGCAAACACGTTGGCAAGCGCTTCATATATATCACACGACCA
ACACCGCAAAGAATTAGTTATTTGAGAGGCAACTTACGTGATGCCATCGA
AGCTGGCATGGAGCATGTGCCAATTGGCCTGGAAGCTTTTCGGAGTGGCT
TCACAGACACGAGACCGCGAGAGATTAGAGATGTAGCGCTGGAAGTTCTC
CGGGATCTTGGGTACAAAATTTCTTCTGAGAACTCTCTTTTCATACCTCA
GGGCGGAGCATGGACCGGGGCTGAACACGGAATTCGAGTTTTGGCACATG
AACTTCGCAGCCAGATTGATCAACTGCGACTAGATGGTCGACTTGCACTA
AGAAAGCCAATCCTGTTTTTGTCTTCAGGAACGGGAACGACTGCCTTTTA
CCTTCAGAAGCATTTACAATCCCATGCAAAGGTAGTAACTGTTCCGGTGT
CAGGAGATGAGCGATACCTGGTGAAGCAAATCAGATGGCTAGATTCCTAT
GAGAGCAACTCCGAAGAAACCATGAAGACTACGGATTTCCCGAATATTCT
GCGACCCCGCTTACGCTCAACTTTTGCGGATGTAAGACCAGAGAAGCTTG
CGATATGGAAAGAGCTTTGTCGTTCTACAGGCGGTGCTTTTGAATTTGAC
CTTGTCTATGCTCCAAAAACGTGGGAAGAAGTGATGTTGGCGATTCAAGA
AGGTAGGCTTGCCGCCGAAGGAGAGGACTTGATATATTATCACTCAGGTG
GGACAGAAGGGAACGCTTCAATGCTTGACAGATTTTCTCGGGCTGGAATA
AGGTAG
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