Ggra5134.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5134.t1
Unique NameGgra5134.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:558327..558893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5134Ggra5134Gracilaria gracilis GNS1m malegenetig00000069_pilon 558327..558893 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5134.t1.stop1Ggra5134.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 558327..558329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5134.t1.CDS1Ggra5134.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 558327..558893 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5134.t1.exon1Ggra5134.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 558327..558893 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5134.t1.start1Ggra5134.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 558891..558893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5134.t1Ggra5134.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 558327..558893 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5134.t1 ID=Ggra5134.t1|Name=Ggra5134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=189bp
MPPAHPTTAPVPGENVLSTWPNAKLFLAAGDGSAWASLAAFDGVGTLRLT
TCRLLFSLTPPSTARAHLSIPLAWLRPDRLHIRRPFFDNQHIAGLLTPCE
LHTPDPIFSACKSMHFRLQLLDVHVNDELFHALRELIADPQRLALHTRVL
RAQVDKKLVPSGKCYAFVDPNDRRYLHLATQMMHPEFP*
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spliced messenger RNA

>Ggra5134.t1 ID=Ggra5134.t1|Name=Ggra5134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000069_pilon:558327..558893- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGCACATCCAACCACCGCGCCCGTGCCGGGCGAGAACGTGCT
GTCAACCTGGCCAAACGCAAAGCTCTTCCTCGCCGCCGGCGACGGCTCCG
CCTGGGCGTCGCTCGCCGCCTTCGATGGCGTCGGCACGCTGCGTCTGACT
ACGTGCCGCCTGCTGTTCAGTCTCACGCCTCCGTCTACTGCGCGCGCGCA
CCTCTCCATCCCGCTGGCGTGGCTACGTCCTGACCGACTGCATATTCGTC
GCCCCTTCTTTGATAACCAGCACATCGCTGGCTTGCTCACGCCATGCGAA
CTGCATACGCCTGACCCTATCTTCAGCGCGTGCAAGAGCATGCACTTCAG
ACTGCAGTTGCTGGACGTGCATGTCAACGACGAGCTGTTTCACGCGCTGC
GTGAGCTCATCGCCGACCCGCAGCGACTGGCGTTGCATACGCGCGTACTT
CGCGCGCAGGTTGATAAGAAGTTGGTTCCGTCTGGAAAGTGTTATGCTTT
TGTGGATCCCAACGACCGCCGTTACCTGCATCTAGCAACGCAGATGATGC
ATCCAGAATTTCCGTAG
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protein sequence of Ggra5134.t1

>Ggra5134.t1 ID=Ggra5134.t1|Name=Ggra5134.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MPPAHPTTAPVPGENVLSTWPNAKLFLAAGDGSAWASLAAFDGVGTLRLT
TCRLLFSLTPPSTARAHLSIPLAWLRPDRLHIRRPFFDNQHIAGLLTPCE
LHTPDPIFSACKSMHFRLQLLDVHVNDELFHALRELIADPQRLALHTRVL
RAQVDKKLVPSGKCYAFVDPNDRRYLHLATQMMHPEFP*
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mRNA from alignment at tig00000069_pilon:558327..558893-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5134.t1 ID=Ggra5134.t1|Name=Ggra5134.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000069_pilon:558327..558893- (Gracilaria gracilis GNS1m male)
ATGCCGCCCGCACATCCAACCACCGCGCCCGTGCCGGGCGAGAACGTGCT
GTCAACCTGGCCAAACGCAAAGCTCTTCCTCGCCGCCGGCGACGGCTCCG
CCTGGGCGTCGCTCGCCGCCTTCGATGGCGTCGGCACGCTGCGTCTGACT
ACGTGCCGCCTGCTGTTCAGTCTCACGCCTCCGTCTACTGCGCGCGCGCA
CCTCTCCATCCCGCTGGCGTGGCTACGTCCTGACCGACTGCATATTCGTC
GCCCCTTCTTTGATAACCAGCACATCGCTGGCTTGCTCACGCCATGCGAA
CTGCATACGCCTGACCCTATCTTCAGCGCGTGCAAGAGCATGCACTTCAG
ACTGCAGTTGCTGGACGTGCATGTCAACGACGAGCTGTTTCACGCGCTGC
GTGAGCTCATCGCCGACCCGCAGCGACTGGCGTTGCATACGCGCGTACTT
CGCGCGCAGGTTGATAAGAAGTTGGTTCCGTCTGGAAAGTGTTATGCTTT
TGTGGATCCCAACGACCGCCGTTACCTGCATCTAGCAACGCAGATGATGC
ATCCAGAATTTCCGTAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:558327..558893-

>Ggra5134.t1 ID=Ggra5134.t1|Name=Ggra5134.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00000069_pilon:558327..558893- (Gracilaria gracilis GNS1m male)
ATGCCGCCCGCACATCCAACCACCGCGCCCGTGCCGGGCGAGAACGTGCT
GTCAACCTGGCCAAACGCAAAGCTCTTCCTCGCCGCCGGCGACGGCTCCG
CCTGGGCGTCGCTCGCCGCCTTCGATGGCGTCGGCACGCTGCGTCTGACT
ACGTGCCGCCTGCTGTTCAGTCTCACGCCTCCGTCTACTGCGCGCGCGCA
CCTCTCCATCCCGCTGGCGTGGCTACGTCCTGACCGACTGCATATTCGTC
GCCCCTTCTTTGATAACCAGCACATCGCTGGCTTGCTCACGCCATGCGAA
CTGCATACGCCTGACCCTATCTTCAGCGCGTGCAAGAGCATGCACTTCAG
ACTGCAGTTGCTGGACGTGCATGTCAACGACGAGCTGTTTCACGCGCTGC
GTGAGCTCATCGCCGACCCGCAGCGACTGGCGTTGCATACGCGCGTACTT
CGCGCGCAGGTTGATAAGAAGTTGGTTCCGTCTGGAAAGTGTTATGCTTT
TGTGGATCCCAACGACCGCCGTTACCTGCATCTAGCAACGCAGATGATGC
ATCCAGAATTTCCGTAG
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