Ggra5135.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5135.t1
Unique NameGgra5135.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length452
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:559267..560754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_03733T0
PFAMsAa_trans
Max annot lvl2759|Eukaryota
KEGG koko:K14207,ko:K14992,ko:K14993,ko:K14997
KEGG TC2.A.18.6,2.A.18.6.4,2.A.18.6.5,2.A.18.6.8
KEGG Pathwayko04724,ko04727,ko04974,map04724,map04727,map04974
GOsGO:0000302,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0006950,GO:0006979,GO:0008150,GO:0008509,GO:0008514,GO:0009719,GO:0009723,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0012505,GO:0015075,GO:0015171,GO:0015318,GO:0015711,GO:0015849,GO:0016020,GO:0022857,GO:0031090,GO:0031984,GO:0032870,GO:0033554,GO:0034220,GO:0034599,GO:0034614,GO:0035690,GO:0042175,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071310,GO:0071369,GO:0071495,GO:0071702,GO:0071705,GO:0071731,GO:0071732,GO:0097366,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1903825,GO:1905039
Evalue1.86e-15
EggNOG OGsCOG0814@1|root,KOG1305@2759|Eukaryota
Descriptionamino acid transmembrane transporter activity
COG categoryE
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5135Ggra5135Gracilaria gracilis GNS1m malegenetig00000069_pilon 559267..560754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5135.t1Ggra5135.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 559267..560754 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5135.t1.stop1Ggra5135.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 559267..559269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5135.t1.CDS1Ggra5135.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 559267..560127 -
Ggra5135.t1.CDS2Ggra5135.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 560260..560754 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5135.t1.exon1Ggra5135.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 559267..560127 -
Ggra5135.t1.exon2Ggra5135.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 560260..560754 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5135.t1.intron1Ggra5135.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 560128..560259 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5135.t1.start1Ggra5135.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 560752..560754 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5135.t1 ID=Ggra5135.t1|Name=Ggra5135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=452bp
MADTSDHDIIPDAAEAVGAEMYSSIPSSGEGTALLDAEGGASPTLISDKT
WPVPDDAPTPTGTIFSSAMNLAACALGASMLSLPYAMMISGPIVAMQFIG
IFAVMAFISAQAIVNAGLRCGKSSYDDIIRNYFGFWQGLVAEILLAIALI
VAAISYIVGLADLLPKMLPIPGCVGRDSLIMITLIIIYPVTLVGNLAAFG
PASAIAAAGCYLQAAALVMQLFTNDEWESPKASTWDSVNLGGLVYSLPMI
CFVYAFHYVLTETLCELRNATRMRMALVNATTIGIQIGCYIPVALAGYLI
YSGVGITTNVLEGLPSGSFAGFVATWSIGGLLLITYSLFIIPLRQKLEKK
LFGTLTTSMRDVKRLGLAAVLNMFVALAALSLPDLGLANTLAGGCIALIM
FFFPGRLMVRFQIEKDFENRDPLRLVIGGIFVFFGGLICLVGLFGNMIFK
F*
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spliced messenger RNA

>Ggra5135.t1 ID=Ggra5135.t1|Name=Ggra5135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00000069_pilon:559267..560754- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATACTTCCGATCATGATATCATTCCCGACGCCGCGGAAGCGGT
AGGCGCTGAAATGTACTCTTCTATCCCATCCAGTGGAGAGGGAACAGCGC
TTCTAGATGCGGAGGGTGGAGCCAGTCCAACCTTGATTTCGGACAAGACG
TGGCCAGTTCCGGATGATGCACCTACGCCAACTGGGACAATATTTTCTTC
TGCCATGAACTTGGCAGCATGCGCTCTGGGTGCTTCTATGCTCAGTTTGC
CGTACGCCATGATGATTTCCGGTCCAATCGTGGCGATGCAGTTCATTGGA
ATCTTTGCAGTGATGGCGTTCATTTCAGCACAGGCTATCGTGAACGCTGG
TCTTAGATGCGGTAAGAGCTCATACGATGATATCATCAGAAATTACTTTG
GTTTCTGGCAAGGTTTGGTGGCGGAGATTCTTCTCGCGATTGCTCTTATC
GTCGCTGCCATCTCTTACATCGTGGGTCTAGCAGATCTTCTTCCGAAAAT
GCTGCCGATTCCGGGCTGCGTCGGACGCGACAGTCTGATCATGATAACCC
TTATCATTATATACCCCGTCACACTGGTGGGAAATCTAGCAGCCTTTGGT
CCGGCATCTGCCATTGCAGCGGCCGGTTGCTATTTGCAGGCAGCGGCGCT
GGTCATGCAACTGTTTACAAATGATGAATGGGAAAGCCCGAAAGCGTCGA
CGTGGGATTCTGTGAACCTTGGAGGTCTGGTGTACTCGCTGCCTATGATT
TGTTTCGTATATGCGTTCCACTATGTTTTGACAGAAACATTGTGCGAGTT
GCGGAACGCGACTCGTATGCGCATGGCGCTCGTGAACGCTACCACGATTG
GAATCCAAATTGGTTGCTACATTCCTGTGGCTCTGGCTGGATATTTGATT
TACAGCGGTGTGGGCATCACAACGAATGTGTTGGAAGGGCTTCCATCCGG
TTCGTTTGCTGGCTTCGTTGCCACATGGTCCATTGGTGGACTTCTGCTGA
TCACGTACTCGCTGTTCATCATTCCGCTTCGTCAGAAGCTGGAGAAGAAG
CTTTTCGGAACGCTAACCACGTCCATGAGGGACGTGAAGCGTCTCGGACT
GGCTGCTGTTCTGAACATGTTTGTTGCGTTGGCTGCGCTGTCATTGCCGG
ACTTGGGCTTGGCCAACACGCTGGCTGGAGGATGCATTGCTCTGATTATG
TTCTTCTTCCCGGGAAGACTGATGGTGCGTTTCCAGATTGAAAAGGATTT
CGAAAACCGGGATCCGTTGCGGCTGGTGATTGGAGGCATTTTCGTGTTCT
TCGGCGGTTTGATTTGTCTGGTGGGCTTGTTCGGCAATATGATTTTCAAG
TTCTGA
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protein sequence of Ggra5135.t1

>Ggra5135.t1 ID=Ggra5135.t1|Name=Ggra5135.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=452bp
MADTSDHDIIPDAAEAVGAEMYSSIPSSGEGTALLDAEGGASPTLISDKT
WPVPDDAPTPTGTIFSSAMNLAACALGASMLSLPYAMMISGPIVAMQFIG
IFAVMAFISAQAIVNAGLRCGKSSYDDIIRNYFGFWQGLVAEILLAIALI
VAAISYIVGLADLLPKMLPIPGCVGRDSLIMITLIIIYPVTLVGNLAAFG
PASAIAAAGCYLQAAALVMQLFTNDEWESPKASTWDSVNLGGLVYSLPMI
CFVYAFHYVLTETLCELRNATRMRMALVNATTIGIQIGCYIPVALAGYLI
YSGVGITTNVLEGLPSGSFAGFVATWSIGGLLLITYSLFIIPLRQKLEKK
LFGTLTTSMRDVKRLGLAAVLNMFVALAALSLPDLGLANTLAGGCIALIM
FFFPGRLMVRFQIEKDFENRDPLRLVIGGIFVFFGGLICLVGLFGNMIFK
F*
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mRNA from alignment at tig00000069_pilon:559267..560754-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5135.t1 ID=Ggra5135.t1|Name=Ggra5135.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000069_pilon:559267..560754- (Gracilaria gracilis GNS1m male)
ATGGCTGATACTTCCGATCATGATATCATTCCCGACGCCGCGGAAGCGGT
AGGCGCTGAAATGTACTCTTCTATCCCATCCAGTGGAGAGGGAACAGCGC
TTCTAGATGCGGAGGGTGGAGCCAGTCCAACCTTGATTTCGGACAAGACG
TGGCCAGTTCCGGATGATGCACCTACGCCAACTGGGACAATATTTTCTTC
TGCCATGAACTTGGCAGCATGCGCTCTGGGTGCTTCTATGCTCAGTTTGC
CGTACGCCATGATGATTTCCGGTCCAATCGTGGCGATGCAGTTCATTGGA
ATCTTTGCAGTGATGGCGTTCATTTCAGCACAGGCTATCGTGAACGCTGG
TCTTAGATGCGGTAAGAGCTCATACGATGATATCATCAGAAATTACTTTG
GTTTCTGGCAAGGTTTGGTGGCGGAGATTCTTCTCGCGATTGCTCTTATC
GTCGCTGCCATCTCTTACATCGTGGGTCTAGCAGATCTTCTTCCGGTAAG
TTATTTTGGTCTTAAAACGTTATTCATTGTGAACAATGGCGAGTTATGAC
TTGTCGTGTGGAGCGAACGTGACAGGATTGGCTAACAGCGTCTTGTGCAT
CTCATGTGCCATTCTTTGTTATAACAGAAAATGCTGCCGATTCCGGGCTG
CGTCGGACGCGACAGTCTGATCATGATAACCCTTATCATTATATACCCCG
TCACACTGGTGGGAAATCTAGCAGCCTTTGGTCCGGCATCTGCCATTGCA
GCGGCCGGTTGCTATTTGCAGGCAGCGGCGCTGGTCATGCAACTGTTTAC
AAATGATGAATGGGAAAGCCCGAAAGCGTCGACGTGGGATTCTGTGAACC
TTGGAGGTCTGGTGTACTCGCTGCCTATGATTTGTTTCGTATATGCGTTC
CACTATGTTTTGACAGAAACATTGTGCGAGTTGCGGAACGCGACTCGTAT
GCGCATGGCGCTCGTGAACGCTACCACGATTGGAATCCAAATTGGTTGCT
ACATTCCTGTGGCTCTGGCTGGATATTTGATTTACAGCGGTGTGGGCATC
ACAACGAATGTGTTGGAAGGGCTTCCATCCGGTTCGTTTGCTGGCTTCGT
TGCCACATGGTCCATTGGTGGACTTCTGCTGATCACGTACTCGCTGTTCA
TCATTCCGCTTCGTCAGAAGCTGGAGAAGAAGCTTTTCGGAACGCTAACC
ACGTCCATGAGGGACGTGAAGCGTCTCGGACTGGCTGCTGTTCTGAACAT
GTTTGTTGCGTTGGCTGCGCTGTCATTGCCGGACTTGGGCTTGGCCAACA
CGCTGGCTGGAGGATGCATTGCTCTGATTATGTTCTTCTTCCCGGGAAGA
CTGATGGTGCGTTTCCAGATTGAAAAGGATTTCGAAAACCGGGATCCGTT
GCGGCTGGTGATTGGAGGCATTTTCGTGTTCTTCGGCGGTTTGATTTGTC
TGGTGGGCTTGTTCGGCAATATGATTTTCAAGTTCTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:559267..560754-

>Ggra5135.t1 ID=Ggra5135.t1|Name=Ggra5135.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1356bp|location=Sequence derived from alignment at tig00000069_pilon:559267..560754- (Gracilaria gracilis GNS1m male)
ATGGCTGATACTTCCGATCATGATATCATTCCCGACGCCGCGGAAGCGGT
AGGCGCTGAAATGTACTCTTCTATCCCATCCAGTGGAGAGGGAACAGCGC
TTCTAGATGCGGAGGGTGGAGCCAGTCCAACCTTGATTTCGGACAAGACG
TGGCCAGTTCCGGATGATGCACCTACGCCAACTGGGACAATATTTTCTTC
TGCCATGAACTTGGCAGCATGCGCTCTGGGTGCTTCTATGCTCAGTTTGC
CGTACGCCATGATGATTTCCGGTCCAATCGTGGCGATGCAGTTCATTGGA
ATCTTTGCAGTGATGGCGTTCATTTCAGCACAGGCTATCGTGAACGCTGG
TCTTAGATGCGGTAAGAGCTCATACGATGATATCATCAGAAATTACTTTG
GTTTCTGGCAAGGTTTGGTGGCGGAGATTCTTCTCGCGATTGCTCTTATC
GTCGCTGCCATCTCTTACATCGTGGGTCTAGCAGATCTTCTTCCGAAAAT
GCTGCCGATTCCGGGCTGCGTCGGACGCGACAGTCTGATCATGATAACCC
TTATCATTATATACCCCGTCACACTGGTGGGAAATCTAGCAGCCTTTGGT
CCGGCATCTGCCATTGCAGCGGCCGGTTGCTATTTGCAGGCAGCGGCGCT
GGTCATGCAACTGTTTACAAATGATGAATGGGAAAGCCCGAAAGCGTCGA
CGTGGGATTCTGTGAACCTTGGAGGTCTGGTGTACTCGCTGCCTATGATT
TGTTTCGTATATGCGTTCCACTATGTTTTGACAGAAACATTGTGCGAGTT
GCGGAACGCGACTCGTATGCGCATGGCGCTCGTGAACGCTACCACGATTG
GAATCCAAATTGGTTGCTACATTCCTGTGGCTCTGGCTGGATATTTGATT
TACAGCGGTGTGGGCATCACAACGAATGTGTTGGAAGGGCTTCCATCCGG
TTCGTTTGCTGGCTTCGTTGCCACATGGTCCATTGGTGGACTTCTGCTGA
TCACGTACTCGCTGTTCATCATTCCGCTTCGTCAGAAGCTGGAGAAGAAG
CTTTTCGGAACGCTAACCACGTCCATGAGGGACGTGAAGCGTCTCGGACT
GGCTGCTGTTCTGAACATGTTTGTTGCGTTGGCTGCGCTGTCATTGCCGG
ACTTGGGCTTGGCCAACACGCTGGCTGGAGGATGCATTGCTCTGATTATG
TTCTTCTTCCCGGGAAGACTGATGGTGCGTTTCCAGATTGAAAAGGATTT
CGAAAACCGGGATCCGTTGCGGCTGGTGATTGGAGGCATTTTCGTGTTCT
TCGGCGGTTTGATTTGTCTGGTGGGCTTGTTCGGCAATATGATTTTCAAG
TTCTGA
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