Ggra5105.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5105.t1
Unique NameGgra5105.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:477844..478977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5105Ggra5105Gracilaria gracilis GNS1m malegenetig00000069_pilon 477844..478977 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5105.t1.start1Ggra5105.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 477844..477846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5105.t1.CDS1Ggra5105.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 477844..478977 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5105.t1.exon1Ggra5105.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 477844..478977 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5105.t1.stop1Ggra5105.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 478975..478977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5105.t1Ggra5105.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 477844..478977 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5105.t1 ID=Ggra5105.t1|Name=Ggra5105.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MPDTVVATDTSALADATRPGDDHVPSAALLTEEAAKEALVASVATPNVPD
TDGPAPSHVPDAPHVADHMQAAPDHGVHEVGQTAADAPHPHHHSHHENGA
PDGQAPTQQHMADMSAAASADVQTSEAMHMAVNPMAVSVSMPSVSMPPVA
LPNVTIPNVSMSLPATMAPNMPAVQAVPDQHHPLVKDDDTIMARQNDETP
LVEVAEAMMAANEVFNRVKSEKIAEQALCSIRNDQAQYEGLAKEIVGKAI
KQKERERANRASAAASRAKVLRYQTELESRLNRMEAERNAYRKELSELRN
AHHIDTGRKITPDETKQLTKLQDWIRKMEAANPSFVRSIIAQQEMDKLLG
EDNLGERLELDDKLEDEHAAKRRRTAL*
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spliced messenger RNA

>Ggra5105.t1 ID=Ggra5105.t1|Name=Ggra5105.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000069_pilon:477844..478977+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGACACCGTGGTAGCTACAGACACCTCCGCGCTAGCAGATGCCAC
TAGACCCGGCGACGACCACGTCCCCTCCGCCGCCCTGTTGACCGAGGAGG
CCGCCAAGGAGGCGCTAGTCGCCTCCGTAGCCACCCCCAACGTCCCCGAC
ACCGATGGTCCGGCCCCCTCCCACGTACCCGATGCTCCGCACGTCGCCGA
TCACATGCAAGCCGCACCCGACCATGGCGTGCACGAGGTAGGTCAGACCG
CCGCCGACGCTCCGCACCCTCACCACCACTCGCACCACGAGAATGGCGCC
CCCGACGGCCAAGCGCCCACGCAGCAGCACATGGCCGACATGTCCGCCGC
CGCCTCCGCCGACGTTCAGACCTCCGAGGCCATGCACATGGCCGTCAATC
CCATGGCAGTTTCCGTCAGCATGCCCTCGGTTAGCATGCCCCCCGTTGCT
TTACCCAACGTCACCATTCCGAACGTCAGTATGAGCTTACCGGCAACCAT
GGCGCCCAACATGCCCGCCGTTCAAGCCGTGCCCGATCAGCATCACCCGC
TCGTAAAGGACGATGACACCATCATGGCCCGCCAGAACGATGAGACTCCG
CTTGTTGAGGTCGCCGAGGCCATGATGGCCGCCAATGAGGTCTTCAACCG
CGTCAAGAGTGAGAAGATCGCCGAGCAGGCTCTCTGCTCTATTCGCAACG
ATCAAGCTCAGTATGAGGGCTTGGCAAAGGAGATCGTCGGCAAGGCTATC
AAGCAAAAGGAGAGAGAAAGGGCAAATCGAGCCTCTGCCGCTGCCTCCAG
AGCAAAAGTGTTGAGGTACCAAACCGAATTGGAATCAAGACTCAACCGTA
TGGAGGCAGAACGTAATGCATACCGCAAGGAGCTCTCCGAACTAAGAAAT
GCTCATCACATTGACACAGGTCGTAAGATCACCCCGGACGAAACAAAGCA
GCTTACTAAGCTTCAGGATTGGATTCGAAAAATGGAAGCTGCAAACCCAT
CGTTTGTTCGATCTATCATCGCACAACAAGAAATGGACAAACTGCTTGGT
GAGGATAATCTTGGCGAAAGGTTAGAACTGGACGATAAGTTGGAAGACGA
ACATGCTGCTAAGCGGCGTCGCACTGCACTGTGA
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protein sequence of Ggra5105.t1

>Ggra5105.t1 ID=Ggra5105.t1|Name=Ggra5105.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MPDTVVATDTSALADATRPGDDHVPSAALLTEEAAKEALVASVATPNVPD
TDGPAPSHVPDAPHVADHMQAAPDHGVHEVGQTAADAPHPHHHSHHENGA
PDGQAPTQQHMADMSAAASADVQTSEAMHMAVNPMAVSVSMPSVSMPPVA
LPNVTIPNVSMSLPATMAPNMPAVQAVPDQHHPLVKDDDTIMARQNDETP
LVEVAEAMMAANEVFNRVKSEKIAEQALCSIRNDQAQYEGLAKEIVGKAI
KQKERERANRASAAASRAKVLRYQTELESRLNRMEAERNAYRKELSELRN
AHHIDTGRKITPDETKQLTKLQDWIRKMEAANPSFVRSIIAQQEMDKLLG
EDNLGERLELDDKLEDEHAAKRRRTAL*
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mRNA from alignment at tig00000069_pilon:477844..478977+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5105.t1 ID=Ggra5105.t1|Name=Ggra5105.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000069_pilon:477844..478977+ (Gracilaria gracilis GNS1m male)
ATGCCCGACACCGTGGTAGCTACAGACACCTCCGCGCTAGCAGATGCCAC
TAGACCCGGCGACGACCACGTCCCCTCCGCCGCCCTGTTGACCGAGGAGG
CCGCCAAGGAGGCGCTAGTCGCCTCCGTAGCCACCCCCAACGTCCCCGAC
ACCGATGGTCCGGCCCCCTCCCACGTACCCGATGCTCCGCACGTCGCCGA
TCACATGCAAGCCGCACCCGACCATGGCGTGCACGAGGTAGGTCAGACCG
CCGCCGACGCTCCGCACCCTCACCACCACTCGCACCACGAGAATGGCGCC
CCCGACGGCCAAGCGCCCACGCAGCAGCACATGGCCGACATGTCCGCCGC
CGCCTCCGCCGACGTTCAGACCTCCGAGGCCATGCACATGGCCGTCAATC
CCATGGCAGTTTCCGTCAGCATGCCCTCGGTTAGCATGCCCCCCGTTGCT
TTACCCAACGTCACCATTCCGAACGTCAGTATGAGCTTACCGGCAACCAT
GGCGCCCAACATGCCCGCCGTTCAAGCCGTGCCCGATCAGCATCACCCGC
TCGTAAAGGACGATGACACCATCATGGCCCGCCAGAACGATGAGACTCCG
CTTGTTGAGGTCGCCGAGGCCATGATGGCCGCCAATGAGGTCTTCAACCG
CGTCAAGAGTGAGAAGATCGCCGAGCAGGCTCTCTGCTCTATTCGCAACG
ATCAAGCTCAGTATGAGGGCTTGGCAAAGGAGATCGTCGGCAAGGCTATC
AAGCAAAAGGAGAGAGAAAGGGCAAATCGAGCCTCTGCCGCTGCCTCCAG
AGCAAAAGTGTTGAGGTACCAAACCGAATTGGAATCAAGACTCAACCGTA
TGGAGGCAGAACGTAATGCATACCGCAAGGAGCTCTCCGAACTAAGAAAT
GCTCATCACATTGACACAGGTCGTAAGATCACCCCGGACGAAACAAAGCA
GCTTACTAAGCTTCAGGATTGGATTCGAAAAATGGAAGCTGCAAACCCAT
CGTTTGTTCGATCTATCATCGCACAACAAGAAATGGACAAACTGCTTGGT
GAGGATAATCTTGGCGAAAGGTTAGAACTGGACGATAAGTTGGAAGACGA
ACATGCTGCTAAGCGGCGTCGCACTGCACTGTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:477844..478977+

>Ggra5105.t1 ID=Ggra5105.t1|Name=Ggra5105.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000069_pilon:477844..478977+ (Gracilaria gracilis GNS1m male)
ATGCCCGACACCGTGGTAGCTACAGACACCTCCGCGCTAGCAGATGCCAC
TAGACCCGGCGACGACCACGTCCCCTCCGCCGCCCTGTTGACCGAGGAGG
CCGCCAAGGAGGCGCTAGTCGCCTCCGTAGCCACCCCCAACGTCCCCGAC
ACCGATGGTCCGGCCCCCTCCCACGTACCCGATGCTCCGCACGTCGCCGA
TCACATGCAAGCCGCACCCGACCATGGCGTGCACGAGGTAGGTCAGACCG
CCGCCGACGCTCCGCACCCTCACCACCACTCGCACCACGAGAATGGCGCC
CCCGACGGCCAAGCGCCCACGCAGCAGCACATGGCCGACATGTCCGCCGC
CGCCTCCGCCGACGTTCAGACCTCCGAGGCCATGCACATGGCCGTCAATC
CCATGGCAGTTTCCGTCAGCATGCCCTCGGTTAGCATGCCCCCCGTTGCT
TTACCCAACGTCACCATTCCGAACGTCAGTATGAGCTTACCGGCAACCAT
GGCGCCCAACATGCCCGCCGTTCAAGCCGTGCCCGATCAGCATCACCCGC
TCGTAAAGGACGATGACACCATCATGGCCCGCCAGAACGATGAGACTCCG
CTTGTTGAGGTCGCCGAGGCCATGATGGCCGCCAATGAGGTCTTCAACCG
CGTCAAGAGTGAGAAGATCGCCGAGCAGGCTCTCTGCTCTATTCGCAACG
ATCAAGCTCAGTATGAGGGCTTGGCAAAGGAGATCGTCGGCAAGGCTATC
AAGCAAAAGGAGAGAGAAAGGGCAAATCGAGCCTCTGCCGCTGCCTCCAG
AGCAAAAGTGTTGAGGTACCAAACCGAATTGGAATCAAGACTCAACCGTA
TGGAGGCAGAACGTAATGCATACCGCAAGGAGCTCTCCGAACTAAGAAAT
GCTCATCACATTGACACAGGTCGTAAGATCACCCCGGACGAAACAAAGCA
GCTTACTAAGCTTCAGGATTGGATTCGAAAAATGGAAGCTGCAAACCCAT
CGTTTGTTCGATCTATCATCGCACAACAAGAAATGGACAAACTGCTTGGT
GAGGATAATCTTGGCGAAAGGTTAGAACTGGACGATAAGTTGGAAGACGA
ACATGCTGCTAAGCGGCGTCGCACTGCACTGTGA
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