Ggra5864.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5864.t1
Unique NameGgra5864.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:194081..194731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G8Q7
PFAMsFKBP_C
Max annot lvl2759|Eukaryota
KEGG koko:K01802
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009543,GO:0009570,GO:0009579,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464
Evalue1.26e-31
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
EC5.2.1.8
Descriptionhistone peptidyl-prolyl isomerization
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5864Ggra5864Gracilaria gracilis GNS1m malegenetig00000068_pilon 194081..194731 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5864.t1.stop1Ggra5864.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 194081..194083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5864.t1.CDS1Ggra5864.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 194081..194731 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5864.t1.exon1Ggra5864.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 194081..194731 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5864.t1.start1Ggra5864.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 194729..194731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5864.t1Ggra5864.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 194081..194731 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5864.t1 ID=Ggra5864.t1|Name=Ggra5864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MERSPSSLSRRKAIGLLFSLPLLPALAQDKETQQEEEPQRIRGFQSVSGL
KFFDFDVGEGPTPQWGDMLNIHYVLYTVTPSGDALVKHDSTYDRGKYGYV
IHHGNGEHVLGLEEALHTMRAGGKRRAIVPLKIGYAKTGFAPIPLKFRRR
KAFIDAVNSGDGTVVFDIELRTIEKDPDDRGYYTDITPTGEEIIKIFEEQ
RGVGVDEVDPSKHITV*
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spliced messenger RNA

>Ggra5864.t1 ID=Ggra5864.t1|Name=Ggra5864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000068_pilon:194081..194731- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGGAGCCCTTCTAGTCTATCGAGAAGGAAGGCCATCGGTCTTTT
GTTCTCCCTGCCACTACTTCCTGCTCTTGCTCAAGACAAGGAAACCCAGC
AAGAGGAAGAGCCTCAGCGAATCAGAGGATTTCAAAGCGTTAGTGGTTTG
AAGTTTTTTGACTTTGACGTCGGTGAGGGTCCAACTCCGCAGTGGGGTGA
CATGCTCAACATTCATTATGTTCTGTATACGGTCACACCTTCCGGAGATG
CGCTTGTAAAACATGATTCAACTTATGATCGGGGCAAATATGGATACGTT
ATCCACCATGGAAACGGGGAGCATGTTTTGGGCCTCGAAGAAGCGTTGCA
CACCATGAGAGCTGGAGGAAAGCGCAGAGCCATTGTTCCACTAAAGATCG
GGTATGCAAAAACTGGGTTTGCTCCTATCCCGTTGAAGTTTAGGCGAAGA
AAAGCTTTCATAGATGCAGTCAACAGCGGTGATGGAACAGTTGTGTTTGA
CATTGAGCTACGGACAATCGAAAAAGACCCTGACGATAGAGGTTACTACA
CAGATATCACGCCCACGGGTGAAGAGATTATAAAAATCTTTGAAGAGCAG
AGGGGTGTTGGAGTTGACGAAGTAGATCCATCGAAACATATAACTGTGTA
A
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protein sequence of Ggra5864.t1

>Ggra5864.t1 ID=Ggra5864.t1|Name=Ggra5864.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MERSPSSLSRRKAIGLLFSLPLLPALAQDKETQQEEEPQRIRGFQSVSGL
KFFDFDVGEGPTPQWGDMLNIHYVLYTVTPSGDALVKHDSTYDRGKYGYV
IHHGNGEHVLGLEEALHTMRAGGKRRAIVPLKIGYAKTGFAPIPLKFRRR
KAFIDAVNSGDGTVVFDIELRTIEKDPDDRGYYTDITPTGEEIIKIFEEQ
RGVGVDEVDPSKHITV*
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mRNA from alignment at tig00000068_pilon:194081..194731-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5864.t1 ID=Ggra5864.t1|Name=Ggra5864.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000068_pilon:194081..194731- (Gracilaria gracilis GNS1m male)
ATGGAACGGAGCCCTTCTAGTCTATCGAGAAGGAAGGCCATCGGTCTTTT
GTTCTCCCTGCCACTACTTCCTGCTCTTGCTCAAGACAAGGAAACCCAGC
AAGAGGAAGAGCCTCAGCGAATCAGAGGATTTCAAAGCGTTAGTGGTTTG
AAGTTTTTTGACTTTGACGTCGGTGAGGGTCCAACTCCGCAGTGGGGTGA
CATGCTCAACATTCATTATGTTCTGTATACGGTCACACCTTCCGGAGATG
CGCTTGTAAAACATGATTCAACTTATGATCGGGGCAAATATGGATACGTT
ATCCACCATGGAAACGGGGAGCATGTTTTGGGCCTCGAAGAAGCGTTGCA
CACCATGAGAGCTGGAGGAAAGCGCAGAGCCATTGTTCCACTAAAGATCG
GGTATGCAAAAACTGGGTTTGCTCCTATCCCGTTGAAGTTTAGGCGAAGA
AAAGCTTTCATAGATGCAGTCAACAGCGGTGATGGAACAGTTGTGTTTGA
CATTGAGCTACGGACAATCGAAAAAGACCCTGACGATAGAGGTTACTACA
CAGATATCACGCCCACGGGTGAAGAGATTATAAAAATCTTTGAAGAGCAG
AGGGGTGTTGGAGTTGACGAAGTAGATCCATCGAAACATATAACTGTGTA
A
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Coding sequence (CDS) from alignment at tig00000068_pilon:194081..194731-

>Ggra5864.t1 ID=Ggra5864.t1|Name=Ggra5864.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000068_pilon:194081..194731- (Gracilaria gracilis GNS1m male)
ATGGAACGGAGCCCTTCTAGTCTATCGAGAAGGAAGGCCATCGGTCTTTT
GTTCTCCCTGCCACTACTTCCTGCTCTTGCTCAAGACAAGGAAACCCAGC
AAGAGGAAGAGCCTCAGCGAATCAGAGGATTTCAAAGCGTTAGTGGTTTG
AAGTTTTTTGACTTTGACGTCGGTGAGGGTCCAACTCCGCAGTGGGGTGA
CATGCTCAACATTCATTATGTTCTGTATACGGTCACACCTTCCGGAGATG
CGCTTGTAAAACATGATTCAACTTATGATCGGGGCAAATATGGATACGTT
ATCCACCATGGAAACGGGGAGCATGTTTTGGGCCTCGAAGAAGCGTTGCA
CACCATGAGAGCTGGAGGAAAGCGCAGAGCCATTGTTCCACTAAAGATCG
GGTATGCAAAAACTGGGTTTGCTCCTATCCCGTTGAAGTTTAGGCGAAGA
AAAGCTTTCATAGATGCAGTCAACAGCGGTGATGGAACAGTTGTGTTTGA
CATTGAGCTACGGACAATCGAAAAAGACCCTGACGATAGAGGTTACTACA
CAGATATCACGCCCACGGGTGAAGAGATTATAAAAATCTTTGAAGAGCAG
AGGGGTGTTGGAGTTGACGAAGTAGATCCATCGAAACATATAACTGTGTA
A
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