Ggra5920.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5920.t1
Unique NameGgra5920.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length271
Homology
BLAST of Ggra5920.t1 vs. uniprot
Match: A0A2V3IT41 (Charged multivesicular body protein 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT41_9FLOR)

HSP 1 Score: 228 bits (580), Expect = 8.270e-71
Identity = 133/243 (54.73%), Postives = 177/243 (72.84%), Query Frame = 0
Query:    1 MGCFESKEQAPIRSYDGRKDRKAVKPMPQPSELAQGVSEQQEKISQSSTSNKEKHAPAVVDVPRPEVVVGEQERAELKVKNMRDKLLTNISLSEEVMRQDALLALKMRQEGKLASARVLVRKRKLAQSRIIKSETMLDRVMEMIDTLDTAKDNASFVEALEQGTAAINEITKDVSAERVHNALADNNEAVEYVNFLGKVMEGEVDILTDEQVEDELDELAKEFETTPQKETHEEVVAKIPDVP 243
            MGCFESK   PI +++    + AV P+ +  +  Q   E     ++ +  ++++    +V V RPE+ VGEQERAELKVKN+RDKL + ISLSEEV+++D +LAL+M+Q+GKLASAR+L+RKRKL QSRI   E ML +VM+ IDT++TAKDN  FV ALEQGT AINEITKD+SAERV +AL  N+EA+EYV ++G V+    D +TDEQVEDEL  LA+EFE+    ++  E VAKIP+VP
Sbjct:    1 MGCFESKPYEPIVAHE-TVTKDAVAPISEIQKPLQRNVEATAIKARGAVRSEQRPEETIVSVLRPEMRVGEQERAELKVKNLRDKLQSQISLSEEVLKKDGVLALRMKQDGKLASARMLIRKRKLTQSRIANCEVMLSKVMDTIDTMETAKDNVKFVNALEQGTTAINEITKDLSAERVQSALDSNDEALEYVKYIGSVIGDGADTMTDEQVEDELQLLAQEFESQEVVQSGIEKVAKIPEVP 242          
BLAST of Ggra5920.t1 vs. uniprot
Match: A0A814VWX1 (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814VWX1_ADIRI)

HSP 1 Score: 84.7 bits (208), Expect = 3.400e-16
Identity = 55/188 (29.26%), Postives = 105/188 (55.85%), Query Frame = 0
Query:   63 PRPEVVVGEQERAELKVKNMRDKLLTNISLSEEVMRQDALLALKMRQEGKLASARVLVRKRKLAQSRIIKSETMLDRVMEMIDTLDTAKDNASFVEALEQGTAAINEITKDVSAERVHNALADNNEAVEYVNFLGKVMEGEVDILTDEQVEDELDELAKEFETTPQKETHEEVVAKIPDVPIEQPEAP 250
            P  +  + EQ+RA L++K  RD+L  N    E  + ++  +A ++ + G+   A +L+RK+K+ +S++ KSE +L+ V  M   L+ A+     V +L+QG  A+ ++ + +  E +   + D+ EAVEY N +  ++ G +  + +E VE ELDEL +  E+          ++++PD+P  + + P
Sbjct:   11 PPKQPAITEQDRAILQLKQQRDRLTQNRRRIESQLEREREVAKQLLKNGQKDRALLLLRKKKMLESQLDKSENILENVERMTHDLEFAQVQVDVVHSLKQGNDALKKMNELLKLEDIEKLMEDSREAVEYQNEVSNLLSGGLSRVDEEDVEAELDELIRREESAD--------ISRLPDIPHHREQRP 190          
BLAST of Ggra5920.t1 vs. uniprot
Match: A0A815JKE4 (Hypothetical protein n=4 Tax=Adineta steineri TaxID=433720 RepID=A0A815JKE4_9BILA)

HSP 1 Score: 79.7 bits (195), Expect = 2.520e-14
Identity = 53/181 (29.28%), Postives = 98/181 (54.14%), Query Frame = 0
Query:   63 PRPEVVVGEQERAELKVKNMRDKLLTNISLSEEVMRQDALLALKMRQEGKLASARVLVRKRKLAQSRIIKSETMLDRVMEMIDTLDTAKDNASFVEALEQGTAAINEITKDVSAERVHNALADNNEAVEYVNFLGKVMEGEVDILTDEQVEDELDELAKEFETTPQKETHEEVVAKIPDVP 243
            P  +  + EQ+RA L++K  RD+L  N    E  + ++  +A ++ + G+   A +L+RK+K+ ++++ KSE +L+ V  M   L+ A+     V +L QGT A+ ++   +  E +   + D+ EA+EY N +  ++ G +    ++ VE ELDEL +  E           + ++PDVP
Sbjct:   12 PSKQPAITEQDRAILQLKQQRDRLNQNRRRVESQLDREREVAKQLLKNGQKDRALLLLRKKKMLETQLTKSENILENVERMTHDLEFAQVQVDVVNSLRQGTDALKKMNDILKLEDIEQLMEDSREAIEYQNEVSNLLSGGLSRADEQDVEAELDELIRADEANQ--------LGQLPDVP 184          
BLAST of Ggra5920.t1 vs. uniprot
Match: A0A817YF89 (Hypothetical protein n=5 Tax=Rotaria TaxID=231623 RepID=A0A817YF89_9BILA)

HSP 1 Score: 78.6 bits (192), Expect = 7.090e-14
Identity = 52/175 (29.71%), Postives = 98/175 (56.00%), Query Frame = 0
Query:   69 VGEQERAELKVKNMRDKLLTNISLSEEVMRQDALLALKMRQEGKLASARVLVRKRKLAQSRIIKSETMLDRVMEMIDTLDTAKDNASFVEALEQGTAAINEITKDVSAERVHNALADNNEAVEYVNFLGKVMEGEVDILTDEQVEDELDELAKEFETTPQKETHEEVVAKIPDVP 243
            + EQ+RA L++K  RD+L  N    E  + ++  +A ++ + G+   A +L+RK+K+ + ++ KSE +L+ V  M   L+ A+     V +L+QGT A+ ++ + +  E +   + D+ EA+EY N +  ++ G +    ++ VE ELDEL +  E         + + ++PDVP
Sbjct:   18 ITEQDRAILQLKQQRDRLNQNRRRVESQLEREREVAKQLLKNGQKDRALLLLRKKKMLEMQLDKSEGILENVERMTHELEFAQVQVDVVNSLKQGTDALKKMNEILKLEDIEKLMEDSREAIEYQNEVSNLLAGGLSRADEQDVEAELDELIRADEA--------QHIGRLPDVP 184          
BLAST of Ggra5920.t1 vs. uniprot
Match: A0A820XIJ1 (Signal recognition particle subunit SRP68 n=5 Tax=Rotaria socialis TaxID=392032 RepID=A0A820XIJ1_9BILA)

HSP 1 Score: 74.3 bits (181), Expect = 2.420e-11
Identity = 50/175 (28.57%), Postives = 98/175 (56.00%), Query Frame = 0
Query:   69 VGEQERAELKVKNMRDKLLTNISLSEEVMRQDALLALKMRQEGKLASARVLVRKRKLAQSRIIKSETMLDRVMEMIDTLDTAKDNASFVEALEQGTAAINEITKDVSAERVHNALADNNEAVEYVNFLGKVMEGEVDILTDEQVEDELDELAKEFETTPQKETHEEVVAKIPDVP 243
            + EQ+RA L++K  RD L  N    E  + +   +A ++ + G+   A +L+RK+K+ + ++ K+E +L+ V +M   L+ A+  A+ V +L QGT A+ ++ + +  + +   + D+ EA+EY N +  ++ G ++ + +E +E EL+EL    E           + ++PDVP
Sbjct:  661 ITEQDRAVLQLKQQRDLLNQNRRRIENQIERGREVAKQLLKNGQQDRALLLLRKKKMLEMQLYKTEGILENVEQMTHELEFAQVQATVVSSLRQGTDALKKMNELLKIDDIEKLMEDSREAIEYQNEVSNLLAGGLNRVDEENIEAELEELIHAEEARE--------INRLPDVP 827          
BLAST of Ggra5920.t1 vs. uniprot
Match: A0A814FGA8 (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A814FGA8_9BILA)

HSP 1 Score: 69.7 bits (169), Expect = 1.190e-10
Identity = 49/175 (28.00%), Postives = 96/175 (54.86%), Query Frame = 0
Query:   69 VGEQERAELKVKNMRDKLLTNISLSEEVMRQDALLALKMRQEGKLASARVLVRKRKLAQSRIIKSETMLDRVMEMIDTLDTAKDNASFVEALEQGTAAINEITKDVSAERVHNALADNNEAVEYVNFLGKVMEGEVDILTDEQVEDELDELAKEFETTPQKETHEEVVAKIPDVP 243
            + EQ+RA L++K  RD L  N    E  + +   +A ++ + G+   A +L+RK+K+ + ++ K+E +L+ V  M   L+ A+  A+ V +L QGT A+ ++ + +  + +   + D+ EA+EY   +  ++ G ++ + +E +E EL+EL    E           + ++PDVP
Sbjct:   18 ITEQDRAVLQLKQQRDLLNQNRRRIENQIDRGREVAKQLLKNGQQDRALLLLRKKKMLEMQLHKTEGILENVERMTHELEFAQVQATVVSSLRQGTDALKKMNELLKIDDIERLMEDSREAIEYQKEVSNLLAGGLNRVDEENIEAELEELIHAEEARE--------INRLPDVP 184          
BLAST of Ggra5920.t1 vs. uniprot
Match: A0A427YAV5 (Vacuolar protein sorting-associated protein 20 n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427YAV5_9TREE)

HSP 1 Score: 67.4 bits (163), Expect = 8.570e-10
Identity = 49/190 (25.79%), Postives = 99/190 (52.11%), Query Frame = 0
Query:   62 VPRPEVVVGEQERAELKVKNMRDKLLTNISLSEEVMRQDALLALKMRQEGKLASARVLVRKRKLAQSRIIKSETMLDRVMEMIDTLDTAKDNASFVEALEQGTAAINEITKDVSAERVHNALADNNEAVEYVNFLGKVMEGEVDILTDEQVEDELDELAKEFETTPQKETHEEVVAKIPDV-PIEQPEAP 250
            V +P   + +Q+RA L +KN RDKL   +   + V+ ++  +A +   +G    A   +R++K  +  +++++  L  + E++ T++  +  A+ V  LEQG+A + ++ K++S +RV   +  + E +EY   + + +   +    +E+V+ EL  L  E E  P        +  +PD  P+  P+AP
Sbjct:   13 VAQPGPKITQQDRAVLDLKNQRDKLKRYMKQIQVVLDREQEIAKEALAKGDKRRALTALRQKKNQEQMLVRTDGQLQTLQELVRTIEFTQIQAAVVHGLEQGSAVLAQLQKEMSLDRVERLMDSSREGIEYQREIDEALMSNMSPEEEEEVQAELARL--EAEAMP-------AIPNVPDTQPVHLPDAP 193          
BLAST of Ggra5920.t1 vs. uniprot
Match: A0A1I8BNL8 (Uncharacterized protein n=1 Tax=Meloidogyne hapla TaxID=6305 RepID=A0A1I8BNL8_MELHA)

HSP 1 Score: 67.4 bits (163), Expect = 8.570e-10
Identity = 54/205 (26.34%), Postives = 103/205 (50.24%), Query Frame = 0
Query:   61 DVPRPEVVVGEQERAELKVKNMRDKLLTNISLSEEVMRQDALLALKMRQEGKLASARVLVRKRKLAQSRIIKSETMLDRVMEMIDTLDTAKDNASFVEALEQGTAAINEITKDVSAERVHNALADNNEAVEYVNFLGKVMEGEVDILTDEQVEDELDELAKEFETTPQKETHEEVVAKIPDVPIEQPEAPESPRMEVENEKVGEE 265
            D  R   +V EQ++A L  K  RD+L       E  + +D   A    +EG+ + A +L+++++  ++ + +    LDR+ +MI++L+ A+ N    E L+QG  A+ +I + +S E V   + ++ EA  +   L  ++ G+               L++E E   ++E  + + +++P+V  E+P   E  + EVE  K  EE
Sbjct:    8 DKKRRATLVSEQDKAILTAKMSRDRLKQICKRCEANIEKDKERARVHLREGRKSQALLLLKRKRYEETTVNQVLVYLDRITQMINSLEMAQLNVEVTERLKQGNEALKQINESISIEEVERIIEESREAEAFQEELAFLLRGK---------------LSEEDEQAAEEEYEQLLASQLPNVISEKPVREEGEKEEVERRKEKEE 197          
BLAST of Ggra5920.t1 vs. uniprot
Match: A0A1X7UJG8 (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UJG8_AMPQE)

HSP 1 Score: 66.2 bits (160), Expect = 2.280e-9
Identity = 50/177 (28.25%), Postives = 94/177 (53.11%), Query Frame = 0
Query:   69 VGEQERAELKVKNMRDKLLTNISLSEEVMRQDALLALKMRQEGKLASARVLVRKRKLAQSRIIKSETMLDRVMEMIDTLDTAKDNASFVEALEQGTAAINEITKDVSAERVHNALADNNEAVEYVNFLGKVMEGEVDILTDEQVEDELDE-LAKEFETTPQKETHEEVVAKIPDVPI 244
            V EQ+RA L++K  RD+L          + ++  +A K+ Q+GK   A++L++K++  +  + K++T +D +M+M++TL+  +     VE L+QG   + E+ K +S E V   + +  +A+ Y        + E+D L  + +  E +E +A E E          + A IP+VP+
Sbjct:   24 VSEQDRAILQLKRQRDELNKYQKRINTQIEREKGVAKKLIQDGKKDRAKLLLKKKRYLEGLLDKTDTQIDNLMQMVETLEYTQIEMKVVEGLKQGNECLQEMHKIMSLEDVEKIMDETQDAIAY--------QQEIDELLGQNLTGEDEEAIAAELENI--------LTADIPEVPV 184          
BLAST of Ggra5920.t1 vs. uniprot
Match: A0A369K456 (Charged multivesicular body protein 6 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369K456_HYPMA)

HSP 1 Score: 65.9 bits (159), Expect = 3.320e-9
Identity = 47/179 (26.26%), Postives = 93/179 (51.96%), Query Frame = 0
Query:   69 VGEQERAELKVKNMRDKLLTNISLSEEVMRQDALLALKMRQEGKLASARVLVRKRKLAQSRIIKSETMLDRVMEMIDTLDTAKDNASFVEALEQGTAAINEITKDVSAERVHNALADNNEAVEYVNFLGKVMEGEVDILTDEQVEDELDELAKEFETTPQKETHEEVVAKIPDVPIEQP 247
            +  Q+RA L +K  RDKL       + ++ ++  +A      G+   A V +R+RK  QS ++K+++ L+ + +++ T++ +    S +  L+QG   + EI K+++ E V   L + +EA EY   +G+++   + +  ++ V+ EL EL  +      +E       ++P VP  QP
Sbjct:   23 ITSQDRAILDLKLQRDKLRQYQKKIQVILDREQAIAKAHLAAGQKERAIVALRRRKYQQSLLLKTDSQLENLEQLVSTIEFSLVEVSVLHGLKQGNEVLKEIHKEMNVEAVEKLLEETSEAREYQREIGQMLSNNLTLDEEDAVQAELRELQSDI----LQEAQRPESVELPTVPTTQP 197          
The following BLAST results are available for this feature:
BLAST of Ggra5920.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A2V3IT418.270e-7154.73Charged multivesicular body protein 6 n=1 Tax=Grac... [more]
A0A814VWX13.400e-1629.26Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A815JKE42.520e-1429.28Hypothetical protein n=4 Tax=Adineta steineri TaxI... [more]
A0A817YF897.090e-1429.71Hypothetical protein n=5 Tax=Rotaria TaxID=231623 ... [more]
A0A820XIJ12.420e-1128.57Signal recognition particle subunit SRP68 n=5 Tax=... [more]
A0A814FGA81.190e-1028.00Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
A0A427YAV58.570e-1025.79Vacuolar protein sorting-associated protein 20 n=1... [more]
A0A1I8BNL88.570e-1026.34Uncharacterized protein n=1 Tax=Meloidogyne hapla ... [more]
A0A1X7UJG82.280e-928.25Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A369K4563.320e-926.26Charged multivesicular body protein 6 n=1 Tax=Hyps... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005024Snf7 familyPFAMPF03357Snf7coord: 75..244
e-value: 6.5E-12
score: 45.4
IPR005024Snf7 familyPANTHERPTHR22761CHARGED MULTIVESICULAR BODY PROTEINcoord: 54..259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..270
NoneNo IPR availablePANTHERPTHR22761:SF5CHARGED MULTIVESICULAR BODY PROTEIN 6coord: 54..259

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:540595..541407 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5920.t1Ggra5920.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 540595..541407 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5920.t1 ID=Ggra5920.t1|Name=Ggra5920.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=271bp
MGCFESKEQAPIRSYDGRKDRKAVKPMPQPSELAQGVSEQQEKISQSSTS
NKEKHAPAVVDVPRPEVVVGEQERAELKVKNMRDKLLTNISLSEEVMRQD
ALLALKMRQEGKLASARVLVRKRKLAQSRIIKSETMLDRVMEMIDTLDTA
KDNASFVEALEQGTAAINEITKDVSAERVHNALADNNEAVEYVNFLGKVM
EGEVDILTDEQVEDELDELAKEFETTPQKETHEEVVAKIPDVPIEQPEAP
ESPRMEVENEKVGEEDAVPA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam