Ggra5948.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5948.t1
Unique Name	Ggra5948.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	520

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000068_pilon	contig	tig00000068_pilon:694018..695577 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5948	Ggra5948	Gracilaria gracilis GNS1m male	gene	tig00000068_pilon 694018..695577 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5948.t1.start1	Ggra5948.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000068_pilon 694018..694020 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5948.t1.CDS1	Ggra5948.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000068_pilon 694018..695577 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5948.t1.exon1	Ggra5948.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000068_pilon 694018..695577 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5948.t1.stop1	Ggra5948.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000068_pilon 695575..695577 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5948.t1	Ggra5948.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000068_pilon 694018..695577 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000068_pilon:694018..695577+
coding sequence from alignment at tig00000068_pilon:694018..695577+

mRNA sequence

>Ggra5948.t1 ID=Ggra5948.t1|Name=Ggra5948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=520bp
MSIYRSAASPTSVQCHTLACDRYNSKAARSQLASPKSQSMSFTSASPVYR
PGRKRPPRWSNVSQAELIDRTREHMAAASTTHDPEAQEHAISRLIQLLQA
RFSDVAPYLSTPFVRFFCSTLRPNFTNQTFVYTACRFISILAAPSPEHCL
LMSQNIDVQLCEDLLRYHLEGSQSIHKIIIDAFTPLLNVSESHRSALLEP
MSRGIEWVFAYLRRWKISEHMQLVLLEYFRTLVEDEEELKLEVVRRGLLL
DITDAFDSFPSSYKIRHLAIDLLITLTERSGEIRRQSIEEGHLTHILQTL
QLLQRTPEMVLLTTQAIQIYSADLDTRNLMGKAGFIRELLRTLSRMLEPS
QDLFATSHRDSLCQVLATLRGVVYRSETNRYTLMDLKELKLIKEIIQTYK
FDEHVVEAAFKVLETLCCDMYRDEKPPRFVRETAKREALEDIIRFATSIL
SENKGKARYAELACSVLLQICLIGCPDIVFGTSPDLYSLIPEAIEACFEN
DVVLNVALSLICFTKRCVG*

spliced messenger RNA

>Ggra5948.t1 ID=Ggra5948.t1|Name=Ggra5948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00000068_pilon:694018..695577+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATCTATCGTTCTGCAGCCAGCCCCACCTCTGTGCAATGCCACAC
CCTAGCGTGCGACCGCTACAACTCCAAAGCCGCCCGCTCGCAACTCGCCT
CCCCAAAGTCTCAGTCGATGAGCTTCACTTCTGCCAGTCCCGTGTATCGC
CCTGGTCGCAAGCGCCCTCCGCGCTGGAGCAACGTCTCCCAGGCCGAGCT
TATTGACCGCACAAGGGAGCACATGGCTGCTGCCTCCACTACCCATGACC
CGGAAGCACAGGAGCACGCCATCTCGCGTCTCATTCAACTCCTGCAAGCT
CGCTTCAGCGACGTGGCTCCGTACCTGAGTACCCCGTTTGTTCGCTTCTT
CTGCAGCACCTTGCGGCCAAACTTCACCAACCAAACGTTCGTGTACACCG
CTTGTCGCTTCATCTCCATCTTGGCCGCGCCTTCGCCTGAGCACTGTCTC
CTCATGTCGCAGAACATCGACGTGCAACTGTGCGAAGACCTGCTCCGATA
CCACCTTGAAGGCTCTCAGTCCATCCACAAAATCATCATTGATGCCTTCA
CACCGCTGCTCAACGTCAGCGAGTCGCACCGCTCCGCACTGCTGGAGCCC
ATGTCCAGGGGCATCGAATGGGTCTTTGCTTACTTGCGACGATGGAAGAT
TTCCGAACACATGCAACTCGTGTTGCTCGAATACTTTCGCACACTGGTAG
AGGACGAAGAGGAGTTGAAACTCGAGGTCGTCCGACGAGGTTTGTTGCTC
GATATCACCGATGCCTTCGACAGCTTCCCGTCGTCGTACAAGATACGGCA
CCTTGCGATCGATTTGCTCATCACCCTCACCGAACGCTCTGGCGAAATCA
GAAGACAAAGTATCGAAGAAGGCCATCTCACGCATATTCTTCAAACCTTG
CAGTTGTTACAAAGAACTCCAGAGATGGTTCTCCTCACCACCCAAGCCAT
TCAGATCTACAGCGCTGACCTGGACACCAGGAACCTCATGGGCAAGGCCG
GCTTCATCCGCGAGTTGTTGCGCACGCTGAGCAGAATGCTTGAACCTTCT
CAAGACCTATTCGCCACCTCTCACCGCGACAGCCTTTGTCAGGTGCTGGC
AACTCTGCGAGGCGTTGTATACCGAAGTGAGACCAATCGATATACATTGA
TGGACTTGAAGGAGCTGAAGCTCATTAAGGAGATTATCCAAACATACAAG
TTCGATGAACATGTGGTGGAAGCCGCGTTCAAGGTATTAGAGACATTGTG
TTGCGATATGTACCGAGATGAGAAGCCTCCTCGCTTTGTACGTGAGACAG
CGAAGCGCGAGGCTCTGGAGGACATTATTCGATTCGCAACATCGATACTC
TCGGAGAACAAAGGGAAGGCGCGATACGCGGAACTGGCGTGCTCCGTTCT
GCTTCAAATATGCCTCATCGGATGCCCCGACATAGTCTTTGGGACTAGTC
CTGATCTCTACAGCCTAATCCCAGAAGCAATAGAGGCGTGTTTCGAGAAC
GACGTAGTTCTTAATGTCGCGCTTTCCCTGATATGTTTCACAAAGAGATG
TGTCGGTTGA

protein sequence of Ggra5948.t1

>Ggra5948.t1 ID=Ggra5948.t1|Name=Ggra5948.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=520bp
MSIYRSAASPTSVQCHTLACDRYNSKAARSQLASPKSQSMSFTSASPVYR
PGRKRPPRWSNVSQAELIDRTREHMAAASTTHDPEAQEHAISRLIQLLQA
RFSDVAPYLSTPFVRFFCSTLRPNFTNQTFVYTACRFISILAAPSPEHCL
LMSQNIDVQLCEDLLRYHLEGSQSIHKIIIDAFTPLLNVSESHRSALLEP
MSRGIEWVFAYLRRWKISEHMQLVLLEYFRTLVEDEEELKLEVVRRGLLL
DITDAFDSFPSSYKIRHLAIDLLITLTERSGEIRRQSIEEGHLTHILQTL
QLLQRTPEMVLLTTQAIQIYSADLDTRNLMGKAGFIRELLRTLSRMLEPS
QDLFATSHRDSLCQVLATLRGVVYRSETNRYTLMDLKELKLIKEIIQTYK
FDEHVVEAAFKVLETLCCDMYRDEKPPRFVRETAKREALEDIIRFATSIL
SENKGKARYAELACSVLLQICLIGCPDIVFGTSPDLYSLIPEAIEACFEN
DVVLNVALSLICFTKRCVG*

mRNA from alignment at tig00000068_pilon:694018..695577+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5948.t1 ID=Ggra5948.t1|Name=Ggra5948.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00000068_pilon:694018..695577+ (Gracilaria gracilis GNS1m male)
ATGAGCATCTATCGTTCTGCAGCCAGCCCCACCTCTGTGCAATGCCACAC
CCTAGCGTGCGACCGCTACAACTCCAAAGCCGCCCGCTCGCAACTCGCCT
CCCCAAAGTCTCAGTCGATGAGCTTCACTTCTGCCAGTCCCGTGTATCGC
CCTGGTCGCAAGCGCCCTCCGCGCTGGAGCAACGTCTCCCAGGCCGAGCT
TATTGACCGCACAAGGGAGCACATGGCTGCTGCCTCCACTACCCATGACC
CGGAAGCACAGGAGCACGCCATCTCGCGTCTCATTCAACTCCTGCAAGCT
CGCTTCAGCGACGTGGCTCCGTACCTGAGTACCCCGTTTGTTCGCTTCTT
CTGCAGCACCTTGCGGCCAAACTTCACCAACCAAACGTTCGTGTACACCG
CTTGTCGCTTCATCTCCATCTTGGCCGCGCCTTCGCCTGAGCACTGTCTC
CTCATGTCGCAGAACATCGACGTGCAACTGTGCGAAGACCTGCTCCGATA
CCACCTTGAAGGCTCTCAGTCCATCCACAAAATCATCATTGATGCCTTCA
CACCGCTGCTCAACGTCAGCGAGTCGCACCGCTCCGCACTGCTGGAGCCC
ATGTCCAGGGGCATCGAATGGGTCTTTGCTTACTTGCGACGATGGAAGAT
TTCCGAACACATGCAACTCGTGTTGCTCGAATACTTTCGCACACTGGTAG
AGGACGAAGAGGAGTTGAAACTCGAGGTCGTCCGACGAGGTTTGTTGCTC
GATATCACCGATGCCTTCGACAGCTTCCCGTCGTCGTACAAGATACGGCA
CCTTGCGATCGATTTGCTCATCACCCTCACCGAACGCTCTGGCGAAATCA
GAAGACAAAGTATCGAAGAAGGCCATCTCACGCATATTCTTCAAACCTTG
CAGTTGTTACAAAGAACTCCAGAGATGGTTCTCCTCACCACCCAAGCCAT
TCAGATCTACAGCGCTGACCTGGACACCAGGAACCTCATGGGCAAGGCCG
GCTTCATCCGCGAGTTGTTGCGCACGCTGAGCAGAATGCTTGAACCTTCT
CAAGACCTATTCGCCACCTCTCACCGCGACAGCCTTTGTCAGGTGCTGGC
AACTCTGCGAGGCGTTGTATACCGAAGTGAGACCAATCGATATACATTGA
TGGACTTGAAGGAGCTGAAGCTCATTAAGGAGATTATCCAAACATACAAG
TTCGATGAACATGTGGTGGAAGCCGCGTTCAAGGTATTAGAGACATTGTG
TTGCGATATGTACCGAGATGAGAAGCCTCCTCGCTTTGTACGTGAGACAG
CGAAGCGCGAGGCTCTGGAGGACATTATTCGATTCGCAACATCGATACTC
TCGGAGAACAAAGGGAAGGCGCGATACGCGGAACTGGCGTGCTCCGTTCT
GCTTCAAATATGCCTCATCGGATGCCCCGACATAGTCTTTGGGACTAGTC
CTGATCTCTACAGCCTAATCCCAGAAGCAATAGAGGCGTGTTTCGAGAAC
GACGTAGTTCTTAATGTCGCGCTTTCCCTGATATGTTTCACAAAGAGATG
TGTCGGTTGA

Coding sequence (CDS) from alignment at tig00000068_pilon:694018..695577+

>Ggra5948.t1 ID=Ggra5948.t1|Name=Ggra5948.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1560bp|location=Sequence derived from alignment at tig00000068_pilon:694018..695577+ (Gracilaria gracilis GNS1m male)
ATGAGCATCTATCGTTCTGCAGCCAGCCCCACCTCTGTGCAATGCCACAC
CCTAGCGTGCGACCGCTACAACTCCAAAGCCGCCCGCTCGCAACTCGCCT
CCCCAAAGTCTCAGTCGATGAGCTTCACTTCTGCCAGTCCCGTGTATCGC
CCTGGTCGCAAGCGCCCTCCGCGCTGGAGCAACGTCTCCCAGGCCGAGCT
TATTGACCGCACAAGGGAGCACATGGCTGCTGCCTCCACTACCCATGACC
CGGAAGCACAGGAGCACGCCATCTCGCGTCTCATTCAACTCCTGCAAGCT
CGCTTCAGCGACGTGGCTCCGTACCTGAGTACCCCGTTTGTTCGCTTCTT
CTGCAGCACCTTGCGGCCAAACTTCACCAACCAAACGTTCGTGTACACCG
CTTGTCGCTTCATCTCCATCTTGGCCGCGCCTTCGCCTGAGCACTGTCTC
CTCATGTCGCAGAACATCGACGTGCAACTGTGCGAAGACCTGCTCCGATA
CCACCTTGAAGGCTCTCAGTCCATCCACAAAATCATCATTGATGCCTTCA
CACCGCTGCTCAACGTCAGCGAGTCGCACCGCTCCGCACTGCTGGAGCCC
ATGTCCAGGGGCATCGAATGGGTCTTTGCTTACTTGCGACGATGGAAGAT
TTCCGAACACATGCAACTCGTGTTGCTCGAATACTTTCGCACACTGGTAG
AGGACGAAGAGGAGTTGAAACTCGAGGTCGTCCGACGAGGTTTGTTGCTC
GATATCACCGATGCCTTCGACAGCTTCCCGTCGTCGTACAAGATACGGCA
CCTTGCGATCGATTTGCTCATCACCCTCACCGAACGCTCTGGCGAAATCA
GAAGACAAAGTATCGAAGAAGGCCATCTCACGCATATTCTTCAAACCTTG
CAGTTGTTACAAAGAACTCCAGAGATGGTTCTCCTCACCACCCAAGCCAT
TCAGATCTACAGCGCTGACCTGGACACCAGGAACCTCATGGGCAAGGCCG
GCTTCATCCGCGAGTTGTTGCGCACGCTGAGCAGAATGCTTGAACCTTCT
CAAGACCTATTCGCCACCTCTCACCGCGACAGCCTTTGTCAGGTGCTGGC
AACTCTGCGAGGCGTTGTATACCGAAGTGAGACCAATCGATATACATTGA
TGGACTTGAAGGAGCTGAAGCTCATTAAGGAGATTATCCAAACATACAAG
TTCGATGAACATGTGGTGGAAGCCGCGTTCAAGGTATTAGAGACATTGTG
TTGCGATATGTACCGAGATGAGAAGCCTCCTCGCTTTGTACGTGAGACAG
CGAAGCGCGAGGCTCTGGAGGACATTATTCGATTCGCAACATCGATACTC
TCGGAGAACAAAGGGAAGGCGCGATACGCGGAACTGGCGTGCTCCGTTCT
GCTTCAAATATGCCTCATCGGATGCCCCGACATAGTCTTTGGGACTAGTC
CTGATCTCTACAGCCTAATCCCAGAAGCAATAGAGGCGTGTTTCGAGAAC
GACGTAGTTCTTAATGTCGCGCTTTCCCTGATATGTTTCACAAAGAGATG
TGTCGGTTGA