Ggra5908.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5908.t1
Unique NameGgra5908.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:490742..491179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_026541-tr
Preferred nameRPS23
PFAMsRibosom_S12_S23
Max annot lvl33208|Metazoa
KEGG koko:K02973
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue6.19e-80
EggNOG OGsCOG0048@1|root,KOG1749@2759|Eukaryota,39ZWD@33154|Opisthokonta,3BPBM@33208|Metazoa,3CU4X@33213|Bilateria
Descriptionmaintenance of translational fidelity
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5908Ggra5908Gracilaria gracilis GNS1m malegenetig00000068_pilon 490742..491179 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5908.t1.start1Ggra5908.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 490742..490744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5908.t1.CDS1Ggra5908.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 490742..491179 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5908.t1.exon1Ggra5908.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 490742..491179 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5908.t1.stop1Ggra5908.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 491177..491179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5908.t1Ggra5908.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 490742..491179 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5908.t1 ID=Ggra5908.t1|Name=Ggra5908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=146bp
MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAK
GIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEEND
EVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT*
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spliced messenger RNA

>Ggra5908.t1 ID=Ggra5908.t1|Name=Ggra5908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00000068_pilon:490742..491179+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAACGGAAAGCCGGCGGGAATGCGCTGCGCGCGCAAGCTGCGCAC
CCATCGTCGTGAGCAGAAGTGGCACAACAAGAGGTACTCCCGCAAGCATT
CAGCCACAGCCCTCAAGGCCAATCCGTTTGGCGGAGCCTCCCACGCCAAG
GGTATCGTGCTCGAGAGAATCGGTATCGAGGCCAAACAACCAAACTCCGC
CATTCGAAAATCGTGCCGTGTGCAGTTGATTAAGAATGGAAAGAAGATCG
CCGCCTTTGTGCCTGGTGATGGTTGTCTTAACTTTGTCGAGGAAAATGAT
GAGGTTCTCATTTCTGGTTTCGGTCGAAGTGGTCACTCTGTTGGTGATTT
GCCTGGTGTCCGCTTCAAGGTTGTCAAGGTGGCCGGTGTGTCTCTCCTTG
CTCTCTTCCGAAACAAGAAGGAAAAGCCACGAACTTAA
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protein sequence of Ggra5908.t1

>Ggra5908.t1 ID=Ggra5908.t1|Name=Ggra5908.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=146bp
MGNGKPAGMRCARKLRTHRREQKWHNKRYSRKHSATALKANPFGGASHAK
GIVLERIGIEAKQPNSAIRKSCRVQLIKNGKKIAAFVPGDGCLNFVEEND
EVLISGFGRSGHSVGDLPGVRFKVVKVAGVSLLALFRNKKEKPRT*
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mRNA from alignment at tig00000068_pilon:490742..491179+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5908.t1 ID=Ggra5908.t1|Name=Ggra5908.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00000068_pilon:490742..491179+ (Gracilaria gracilis GNS1m male)
ATGGGAAACGGAAAGCCGGCGGGAATGCGCTGCGCGCGCAAGCTGCGCAC
CCATCGTCGTGAGCAGAAGTGGCACAACAAGAGGTACTCCCGCAAGCATT
CAGCCACAGCCCTCAAGGCCAATCCGTTTGGCGGAGCCTCCCACGCCAAG
GGTATCGTGCTCGAGAGAATCGGTATCGAGGCCAAACAACCAAACTCCGC
CATTCGAAAATCGTGCCGTGTGCAGTTGATTAAGAATGGAAAGAAGATCG
CCGCCTTTGTGCCTGGTGATGGTTGTCTTAACTTTGTCGAGGAAAATGAT
GAGGTTCTCATTTCTGGTTTCGGTCGAAGTGGTCACTCTGTTGGTGATTT
GCCTGGTGTCCGCTTCAAGGTTGTCAAGGTGGCCGGTGTGTCTCTCCTTG
CTCTCTTCCGAAACAAGAAGGAAAAGCCACGAACTTAA
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Coding sequence (CDS) from alignment at tig00000068_pilon:490742..491179+

>Ggra5908.t1 ID=Ggra5908.t1|Name=Ggra5908.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=438bp|location=Sequence derived from alignment at tig00000068_pilon:490742..491179+ (Gracilaria gracilis GNS1m male)
ATGGGAAACGGAAAGCCGGCGGGAATGCGCTGCGCGCGCAAGCTGCGCAC
CCATCGTCGTGAGCAGAAGTGGCACAACAAGAGGTACTCCCGCAAGCATT
CAGCCACAGCCCTCAAGGCCAATCCGTTTGGCGGAGCCTCCCACGCCAAG
GGTATCGTGCTCGAGAGAATCGGTATCGAGGCCAAACAACCAAACTCCGC
CATTCGAAAATCGTGCCGTGTGCAGTTGATTAAGAATGGAAAGAAGATCG
CCGCCTTTGTGCCTGGTGATGGTTGTCTTAACTTTGTCGAGGAAAATGAT
GAGGTTCTCATTTCTGGTTTCGGTCGAAGTGGTCACTCTGTTGGTGATTT
GCCTGGTGTCCGCTTCAAGGTTGTCAAGGTGGCCGGTGTGTCTCTCCTTG
CTCTCTTCCGAAACAAGAAGGAAAAGCCACGAACTTAA
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