Ggra5950.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5950.t1
Unique NameGgra5950.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length167
Homology
BLAST of Ggra5950.t1 vs. uniprot
Match: A0A2V3IUF0 (SHSP domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUF0_9FLOR)

HSP 1 Score: 89.7 bits (221), Expect = 1.360e-19
Identity = 53/141 (37.59%), Postives = 70/141 (49.65%), Query Frame = 0
Query:   54 PRVPP---VVEPTYYVEADDVQGFLYVELPGVRKRDIVIELHGHHLAISAKRFAAALMNPNEEK--------------------------EPKLLVQYDLQLGLSHDTDIAEVKVEEYTNGVLAINIPVAQKKNGRKIQID 165
            PR P     VEP+Y+ E++    FL VELPGV K  I IE+ GHHL +SA+RF  + + P                              +P     Y L+L L++DTD+  VKVE Y NG+L I IPV    + RKI I+
Sbjct:   26 PRTPSSSQTVEPSYFYESNQDSAFLQVELPGVAKEHISIEIQGHHLTLSARRFRTSKLAPLSSSTEGGDAAEAQDADHTATPAASEPGPADPTPAFTYVLELRLANDTDLEAVKVESYVNGILTIRIPVVSSTSSRKITIE 166          
BLAST of Ggra5950.t1 vs. uniprot
Match: R7Q6X4 (Heat Shock Protein 20, HSP20 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6X4_CHOCR)

HSP 1 Score: 66.6 bits (161), Expect = 9.740e-11
Identity = 36/129 (27.91%), Postives = 61/129 (47.29%), Query Frame = 0
Query:   54 PRVPPVVEPTYYVEADDVQGFLYVELPGVRKRDIVIELHGHHLAISAKRFAAALMNPNE-----------------EKEPKLLVQYDLQLGLSHDTDIAEVKVEEYTNGVLAINIPVAQKKNGRKIQID 165
            PR    VEP+Y  EAD       +E+PGV K ++ +E+H + L +  KRF   L+   +                 +K+P   + Y L+  L    ++  +K +   +G+L + IP+   K  RK+QI+
Sbjct:   37 PRSTHTVEPSYRYEADSAAAHFEIEIPGVSKDNLSVEVHENKLTVRGKRFCRPLIEKKDNSAVAKDPAQNGDPDQADKDPAPSIVYHLEARLPQRANVDAIKADHIGDGILNMTIPMVDDKGPRKVQIE 165          
BLAST of Ggra5950.t1 vs. uniprot
Match: Q7XZ71 (Heat shock protein 16 n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XZ71_GRIJA)

HSP 1 Score: 65.1 bits (157), Expect = 2.450e-10
Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 0
Query:   57 PPVVEPTYYVEADDVQGFLYVELPGVRKRDIVIELHGHHLAISAKRF------AAALMNPNEE---KEP---KLLVQYDLQLGLSHDTDIAEVKVEEYTNGVLAINIPVAQKKNGRKIQI 164
            P  + P++++ + D +  L VELPGV K DI +E++   L ++  R+      AA   + NEE   KEP   ++  +Y L++ L  D D+  +  E Y NG+L + IP+  +++ RKI +
Sbjct:   27 PDRIIPSHFIHSGDKEAMLQVELPGVGKEDIEVEVNRRTLYVNGTRYDQVTSTAAVNNDANEEDSGKEPSEKRVERKYSLEIQLGSDADMDGISFESYNNGILTLKIPIVHQES-RKIDL 145          
BLAST of Ggra5950.t1 vs. uniprot
Match: R7QS04 (Heat Shock Protein 20, HSP20 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS04_CHOCR)

HSP 1 Score: 60.5 bits (145), Expect = 2.130e-8
Identity = 36/127 (28.35%), Postives = 60/127 (47.24%), Query Frame = 0
Query:   60 VEPTYYVEADDVQGFLYVELPGVRKRDIVIELHGHHLAISAKRFAAALM---------------------NPNEEKEPKLLVQYDLQLGLSHDTDIAEVKVEEYTNGVLAINIPVAQKKNGRKIQID 165
            VEP+Y  EAD       +E+PGV K ++ +E+H + L +  KRF   L+                     +P E+  P ++  Y L+  L    ++  +K +   +G+L + IP+   K  RKIQI+
Sbjct:   43 VEPSYRYEADGEAAHFEIEIPGVSKDNLSVEVHDNKLTVRGKRFRRPLIEKKDDDPAAAKDPAAQNGDPAHPGEDPVPSIV--YLLEARLPQGANVDAIKADHVGDGILNMTIPMVADKGTRKIQIE 167          
BLAST of Ggra5950.t1 vs. uniprot
Match: A0A7C1DCH9 (Hsp20/alpha crystallin family protein n=1 Tax=Desulfonatronum sp. TaxID=1963255 RepID=A0A7C1DCH9_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 2.480e-7
Identity = 36/95 (37.89%), Postives = 51/95 (53.68%), Query Frame = 0
Query:   72 QGF-LYVELPGVRKRDIVIELHGHHLAISAKRFAAALMNPNEEKEPKLLVQYDLQLGLSHDTDIAEVKVEEYTNGVLAINIPVAQKKNGRKIQID 165
            +GF +YV++PGVRK D+VI+L    L I  K    +  N N        V+Y     LSH  D  ++K     NGVL + +P A+K   RKIQ++
Sbjct:   27 EGFSIYVDMPGVRKEDLVIDLTEDELRIGGKSAYQSATNENRVHVEFGNVEYTRVFTLSHIVDREKIKAT-LKNGVLELLLPKAEKALPRKIQVE 120          
BLAST of Ggra5950.t1 vs. uniprot
Match: A0A1G6B6S5 (Molecular chaperone IbpA, HSP20 family n=6 Tax=Desulfovibrionales TaxID=213115 RepID=A0A1G6B6S5_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 3.470e-7
Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 0
Query:   74 FLYVELPGVRKRDIVIELHGHHLAISAKRFAAALMNPNEEKEPKLLVQYDLQLGLSHDTDIAEVKVEEYTNGVLAINIPVAQKKNGRKIQID 165
            F+YV++PGV K +++I+L    L I  K     + N N        V+Y     LSH  D  ++K     NGVL +++P A+K   RKIQ++
Sbjct:   30 FIYVDMPGVSKEELIIDLSDDELRIGGKSTYQGVTNENRIHVEFGNVEYTRAFTLSHIVDREKIKAT-LKNGVLELHLPKAEKALPRKIQVE 120          
The following BLAST results are available for this feature:
BLAST of Ggra5950.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IUF01.360e-1937.59SHSP domain-containing protein n=1 Tax=Gracilariop... [more]
R7Q6X49.740e-1127.91Heat Shock Protein 20, HSP20 n=1 Tax=Chondrus cris... [more]
Q7XZ712.450e-1032.50Heat shock protein 16 n=1 Tax=Griffithsia japonica... [more]
R7QS042.130e-828.35Heat Shock Protein 20, HSP20 n=1 Tax=Chondrus cris... [more]
A0A7C1DCH92.480e-737.89Hsp20/alpha crystallin family protein n=1 Tax=Desu... [more]
A0A1G6B6S53.470e-734.78Molecular chaperone IbpA, HSP20 family n=6 Tax=Des... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 27..166
e-value: 5.8E-12
score: 47.5
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 58..165
IPR002068Alpha crystallin/Hsp20 domainPFAMPF00011HSP20coord: 76..164
e-value: 5.7E-9
score: 36.0
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 55..166
score: 11.312742
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..51
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..166
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availableCDDcd00298ACD_sHsps_p23-likecoord: 74..152
e-value: 5.85324E-10
score: 51.0507

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:697734..698234 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5950.t1Ggra5950.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 697734..698234 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5950.t1 ID=Ggra5950.t1|Name=Ggra5950.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=167bp
MFPNIAHSIAAPLPFLLGQSHGQSHGQSHGQSHSHFHPFRFGHSRRHPLE
GAQPRVPPVVEPTYYVEADDVQGFLYVELPGVRKRDIVIELHGHHLAISA
KRFAAALMNPNEEKEPKLLVQYDLQLGLSHDTDIAEVKVEEYTNGVLAIN
IPVAQKKNGRKIQIDV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom