Ggra5950.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5950.t1
Unique NameGgra5950.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:697734..698234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog261292.Nit79A3_1536
PFAMsHSP20
Max annot lvl28216|Betaproteobacteria
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue1.98e-06
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,1N1RF@1224|Proteobacteria,2VT18@28216|Betaproteobacteria,37300@32003|Nitrosomonadales
DescriptionHsp20/alpha crystallin family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5950Ggra5950Gracilaria gracilis GNS1m malegenetig00000068_pilon 697734..698234 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5950.t1.stop1Ggra5950.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 697734..697736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5950.t1.CDS1Ggra5950.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 697734..698234 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5950.t1.exon1Ggra5950.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 697734..698234 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5950.t1.start1Ggra5950.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 698232..698234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5950.t1Ggra5950.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 697734..698234 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5950.t1 ID=Ggra5950.t1|Name=Ggra5950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=167bp
MFPNIAHSIAAPLPFLLGQSHGQSHGQSHGQSHSHFHPFRFGHSRRHPLE
GAQPRVPPVVEPTYYVEADDVQGFLYVELPGVRKRDIVIELHGHHLAISA
KRFAAALMNPNEEKEPKLLVQYDLQLGLSHDTDIAEVKVEEYTNGVLAIN
IPVAQKKNGRKIQIDV*
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spliced messenger RNA

>Ggra5950.t1 ID=Ggra5950.t1|Name=Ggra5950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000068_pilon:697734..698234- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCCCAACATCGCTCACTCCATAGCGGCCCCGTTGCCGTTCCTGCT
CGGCCAGTCGCACGGCCAGTCGCACGGCCAGTCGCACGGCCAGTCGCATT
CGCACTTTCACCCGTTCCGTTTCGGTCATAGCCGTCGACACCCGCTGGAG
GGCGCGCAGCCGCGAGTGCCACCTGTGGTGGAGCCTACTTACTATGTCGA
AGCTGATGATGTACAGGGCTTTCTCTACGTAGAACTTCCTGGCGTACGGA
AGAGGGATATTGTCATTGAGTTGCATGGACATCATCTAGCCATTTCCGCG
AAACGGTTTGCAGCGGCTTTGATGAATCCCAACGAGGAGAAGGAACCCAA
GTTGCTTGTTCAGTATGACTTGCAACTGGGCTTGAGTCATGACACAGATA
TTGCCGAGGTTAAAGTTGAGGAGTACACAAATGGTGTGCTCGCGATTAAT
ATTCCTGTTGCACAGAAGAAGAACGGTAGGAAGATTCAGATAGACGTATG
A
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protein sequence of Ggra5950.t1

>Ggra5950.t1 ID=Ggra5950.t1|Name=Ggra5950.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=167bp
MFPNIAHSIAAPLPFLLGQSHGQSHGQSHGQSHSHFHPFRFGHSRRHPLE
GAQPRVPPVVEPTYYVEADDVQGFLYVELPGVRKRDIVIELHGHHLAISA
KRFAAALMNPNEEKEPKLLVQYDLQLGLSHDTDIAEVKVEEYTNGVLAIN
IPVAQKKNGRKIQIDV*
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mRNA from alignment at tig00000068_pilon:697734..698234-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5950.t1 ID=Ggra5950.t1|Name=Ggra5950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000068_pilon:697734..698234- (Gracilaria gracilis GNS1m male)
ATGTTCCCCAACATCGCTCACTCCATAGCGGCCCCGTTGCCGTTCCTGCT
CGGCCAGTCGCACGGCCAGTCGCACGGCCAGTCGCACGGCCAGTCGCATT
CGCACTTTCACCCGTTCCGTTTCGGTCATAGCCGTCGACACCCGCTGGAG
GGCGCGCAGCCGCGAGTGCCACCTGTGGTGGAGCCTACTTACTATGTCGA
AGCTGATGATGTACAGGGCTTTCTCTACGTAGAACTTCCTGGCGTACGGA
AGAGGGATATTGTCATTGAGTTGCATGGACATCATCTAGCCATTTCCGCG
AAACGGTTTGCAGCGGCTTTGATGAATCCCAACGAGGAGAAGGAACCCAA
GTTGCTTGTTCAGTATGACTTGCAACTGGGCTTGAGTCATGACACAGATA
TTGCCGAGGTTAAAGTTGAGGAGTACACAAATGGTGTGCTCGCGATTAAT
ATTCCTGTTGCACAGAAGAAGAACGGTAGGAAGATTCAGATAGACGTATG
A
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Coding sequence (CDS) from alignment at tig00000068_pilon:697734..698234-

>Ggra5950.t1 ID=Ggra5950.t1|Name=Ggra5950.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=501bp|location=Sequence derived from alignment at tig00000068_pilon:697734..698234- (Gracilaria gracilis GNS1m male)
ATGTTCCCCAACATCGCTCACTCCATAGCGGCCCCGTTGCCGTTCCTGCT
CGGCCAGTCGCACGGCCAGTCGCACGGCCAGTCGCACGGCCAGTCGCATT
CGCACTTTCACCCGTTCCGTTTCGGTCATAGCCGTCGACACCCGCTGGAG
GGCGCGCAGCCGCGAGTGCCACCTGTGGTGGAGCCTACTTACTATGTCGA
AGCTGATGATGTACAGGGCTTTCTCTACGTAGAACTTCCTGGCGTACGGA
AGAGGGATATTGTCATTGAGTTGCATGGACATCATCTAGCCATTTCCGCG
AAACGGTTTGCAGCGGCTTTGATGAATCCCAACGAGGAGAAGGAACCCAA
GTTGCTTGTTCAGTATGACTTGCAACTGGGCTTGAGTCATGACACAGATA
TTGCCGAGGTTAAAGTTGAGGAGTACACAAATGGTGTGCTCGCGATTAAT
ATTCCTGTTGCACAGAAGAAGAACGGTAGGAAGATTCAGATAGACGTATG
A
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