Ggra5952.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5952.t1
Unique NameGgra5952.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length203
Homology
BLAST of Ggra5952.t1 vs. uniprot
Match: A0A2V3IMG5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMG5_9FLOR)

HSP 1 Score: 122 bits (307), Expect = 1.120e-31
Identity = 63/165 (38.18%), Postives = 100/165 (60.61%), Query Frame = 0
Query:   37 PIPEASIGKTFSYWDDCYRPSATETVAVYRKMFVYSPIQPTLRVAGCFEKYVVHFRRPQTAPYIA-HFKAFAPPSDLSSSEEVDAYCKAEEVNHRELLFPHGVSRDRYIDAVRLMIENIPRIRDFGCYTDEDGFVGQVPGRAFDNVDVDPIISYLYNLAFTYGFC 200
            P  +  IG+TF+  DDCYRP +++ V+VY+KMF+ +  +       C E+Y+V +R P+  P I  H     P +  +S  +V+ +CK E+   + +LFP   ++  +  AV+ M+  +  IRDFGC   ++GF+ QV GRA+DNVDV  I++YL+ +AF Y  C
Sbjct:   29 PFKKELIGQTFAKLDDCYRPRSSDYVSVYKKMFILTLNENPS--PACPERYLVVYRNPKVTPMIIKHPYLEFPLNGGASGSDVEEWCKKEQQKKKTVLFPVTETKKEFTAAVKAMLPRLKAIRDFGCTATKEGFIIQVQGRAYDNVDVADIMAYLHAVAFKYELC 191          
BLAST of Ggra5952.t1 vs. uniprot
Match: A0A2V3IG86 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG86_9FLOR)

HSP 1 Score: 101 bits (252), Expect = 2.240e-23
Identity = 65/199 (32.66%), Postives = 104/199 (52.26%), Query Frame = 0
Query:   10 LCLVV-LASLQTIDASETARRCNGTVPAPIPEASIGKTFSYWDDCYRPSATETVAVYRKMFVYSPIQPTLRVAGCFEKYVVHFRRPQTAPYIAHFKA---FAPPSDLSSSEEVDAYCKAEEVNHRELLFPHGVSRDRYIDAVRLMIENIPRIRDFGCYTDED--GFVGQVPGRAFDNVDVDPIISYLYNLAFTYGFCSA 202
            +CL+V +  L  +     A     ++  P     +  +F   DDCYRPSA E+++++ +MFVY P   +     C  +YVV  R P   P I +  +   + P  +   S+ +DA C   + N R  LF +  SR ++I+AVR + + + RI++F C  D     F+ Q   R   N+ VD I++YL+ LAF++GFC A
Sbjct:    7 ICLIVAVVVLHVLHTPAVANNSTCSISVPFSPNLVDTSFRLVDDCYRPSAEESISIFSRMFVYWPRHGS--PDPCPVRYVVRIRTPPRPPLIVYLPSPDNYEPIFNAPQSD-MDAVCSRLQRNARRRLFVNDSSRPQFIEAVRAIAQGLKRIKNFQCDIDSGTGAFLPQ-DERKKSNLGVDGILTYLHTLAFSHGFCLA 201          
The following BLAST results are available for this feature:
BLAST of Ggra5952.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IMG51.120e-3138.18Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IG862.240e-2332.66Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..202
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:700988..701596 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5952.t1Ggra5952.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 700988..701596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5952.t1 ID=Ggra5952.t1|Name=Ggra5952.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=203bp
MGYLNHLAILCLVVLASLQTIDASETARRCNGTVPAPIPEASIGKTFSYW
DDCYRPSATETVAVYRKMFVYSPIQPTLRVAGCFEKYVVHFRRPQTAPYI
AHFKAFAPPSDLSSSEEVDAYCKAEEVNHRELLFPHGVSRDRYIDAVRLM
IENIPRIRDFGCYTDEDGFVGQVPGRAFDNVDVDPIISYLYNLAFTYGFC
SA*
back to top