Ggra5940.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5940.t1
Unique NameGgra5940.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length419
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:619625..620881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue5.15e-90
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5940Ggra5940Gracilaria gracilis GNS1m malegenetig00000068_pilon 619625..620881 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5940.t1.start1Ggra5940.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 619625..619627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5940.t1.CDS1Ggra5940.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 619625..620881 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5940.t1.exon1Ggra5940.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 619625..620881 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5940.t1.stop1Ggra5940.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 620879..620881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5940.t1Ggra5940.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 619625..620881 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5940.t1 ID=Ggra5940.t1|Name=Ggra5940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=419bp
MNTPRTKRSLLRFRNSSSVQHNRETSPVLEDNEEVKSAKYRQSVEMSGWV
LKCQRLRAGHVKRYFRLHNSVLSNHPQLTAPPTWEISVSKCIVRTNEQKN
LITLRLVDRQIRFQLTTEAEMKRWAEAIRSGSVCNIEDFYRLDAEIGHGS
FGAVRIAFDISTDEKRAVKIVKRTTNAKELEFVQREIDVLLSISHPHVVG
THDIFDEKDKIYMVMDFVEGGDLFDFMVRKTKLSEDSAKLVVWQMLKGLS
YLHSKNIVHRDIKPENVLVQAVNPLIVRITDFGFANFVDPSSSAPQTDLK
SMVGTGCYMAPEVVDARGHGKPVDVYSTGVVMFRLLSGRLPFRGMTLREC
YKQAMKEEADFHTREWAGISREAKELCKRMLSSKPDSRPSAENALVHRWF
TDDKEFKNGVESIEGVAS*
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spliced messenger RNA

>Ggra5940.t1 ID=Ggra5940.t1|Name=Ggra5940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1257bp|location=Sequence derived from alignment at tig00000068_pilon:619625..620881+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACGCCGAGAACCAAACGAAGTCTTCTTCGCTTCAGGAATAGCTC
TTCTGTTCAGCATAATCGAGAAACATCGCCGGTGCTCGAGGATAATGAAG
AAGTCAAGTCTGCAAAATATCGGCAGTCGGTGGAGATGTCTGGGTGGGTG
TTGAAGTGTCAGCGCTTGCGAGCTGGTCATGTGAAACGATATTTTCGTTT
ACACAATTCCGTGCTCTCTAATCATCCACAACTCACTGCGCCTCCCACTT
GGGAAATTTCTGTGTCCAAATGTATTGTTCGAACAAATGAGCAGAAGAAT
CTCATCACTCTTAGACTGGTGGACAGACAGATTCGCTTTCAGCTTACCAC
TGAAGCTGAAATGAAGCGCTGGGCGGAGGCGATACGTTCAGGTTCTGTGT
GTAATATAGAAGACTTTTACCGTCTTGATGCCGAAATTGGACATGGTAGC
TTTGGAGCAGTCAGAATTGCGTTTGACATTTCTACCGACGAGAAGCGTGC
CGTGAAGATAGTCAAGCGAACTACAAATGCGAAGGAACTCGAATTTGTTC
AGAGAGAGATTGATGTACTTTTGTCCATTTCACATCCACATGTCGTTGGC
ACGCACGACATTTTTGACGAGAAGGATAAGATATACATGGTCATGGATTT
TGTCGAAGGTGGGGATTTATTTGATTTCATGGTACGGAAGACTAAGTTGA
GCGAGGACTCGGCGAAACTCGTTGTGTGGCAAATGCTGAAAGGTTTGAGC
TATCTACACTCTAAGAACATTGTACATAGAGATATTAAGCCAGAGAATGT
GCTTGTACAAGCTGTCAATCCGCTTATTGTGCGAATTACCGACTTCGGCT
TCGCCAACTTTGTAGATCCTTCCAGTAGCGCCCCTCAAACTGACCTTAAA
AGCATGGTCGGGACGGGATGCTACATGGCTCCTGAAGTTGTGGATGCAAG
AGGTCACGGTAAACCTGTAGATGTATATTCTACGGGCGTGGTTATGTTTC
GCCTGTTGAGCGGGAGGCTGCCGTTTCGTGGCATGACGCTGCGAGAATGC
TATAAACAGGCAATGAAAGAAGAAGCGGATTTCCACACACGCGAATGGGC
TGGGATTTCCCGTGAGGCGAAGGAGCTTTGCAAGAGAATGCTGAGCTCAA
AACCGGATTCGAGGCCGTCTGCTGAGAATGCTTTGGTACATCGCTGGTTC
ACCGATGACAAAGAGTTCAAGAATGGAGTAGAATCCATTGAGGGTGTTGC
TTCATGA
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protein sequence of Ggra5940.t1

>Ggra5940.t1 ID=Ggra5940.t1|Name=Ggra5940.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=419bp
MNTPRTKRSLLRFRNSSSVQHNRETSPVLEDNEEVKSAKYRQSVEMSGWV
LKCQRLRAGHVKRYFRLHNSVLSNHPQLTAPPTWEISVSKCIVRTNEQKN
LITLRLVDRQIRFQLTTEAEMKRWAEAIRSGSVCNIEDFYRLDAEIGHGS
FGAVRIAFDISTDEKRAVKIVKRTTNAKELEFVQREIDVLLSISHPHVVG
THDIFDEKDKIYMVMDFVEGGDLFDFMVRKTKLSEDSAKLVVWQMLKGLS
YLHSKNIVHRDIKPENVLVQAVNPLIVRITDFGFANFVDPSSSAPQTDLK
SMVGTGCYMAPEVVDARGHGKPVDVYSTGVVMFRLLSGRLPFRGMTLREC
YKQAMKEEADFHTREWAGISREAKELCKRMLSSKPDSRPSAENALVHRWF
TDDKEFKNGVESIEGVAS*
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mRNA from alignment at tig00000068_pilon:619625..620881+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5940.t1 ID=Ggra5940.t1|Name=Ggra5940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1257bp|location=Sequence derived from alignment at tig00000068_pilon:619625..620881+ (Gracilaria gracilis GNS1m male)
ATGAACACGCCGAGAACCAAACGAAGTCTTCTTCGCTTCAGGAATAGCTC
TTCTGTTCAGCATAATCGAGAAACATCGCCGGTGCTCGAGGATAATGAAG
AAGTCAAGTCTGCAAAATATCGGCAGTCGGTGGAGATGTCTGGGTGGGTG
TTGAAGTGTCAGCGCTTGCGAGCTGGTCATGTGAAACGATATTTTCGTTT
ACACAATTCCGTGCTCTCTAATCATCCACAACTCACTGCGCCTCCCACTT
GGGAAATTTCTGTGTCCAAATGTATTGTTCGAACAAATGAGCAGAAGAAT
CTCATCACTCTTAGACTGGTGGACAGACAGATTCGCTTTCAGCTTACCAC
TGAAGCTGAAATGAAGCGCTGGGCGGAGGCGATACGTTCAGGTTCTGTGT
GTAATATAGAAGACTTTTACCGTCTTGATGCCGAAATTGGACATGGTAGC
TTTGGAGCAGTCAGAATTGCGTTTGACATTTCTACCGACGAGAAGCGTGC
CGTGAAGATAGTCAAGCGAACTACAAATGCGAAGGAACTCGAATTTGTTC
AGAGAGAGATTGATGTACTTTTGTCCATTTCACATCCACATGTCGTTGGC
ACGCACGACATTTTTGACGAGAAGGATAAGATATACATGGTCATGGATTT
TGTCGAAGGTGGGGATTTATTTGATTTCATGGTACGGAAGACTAAGTTGA
GCGAGGACTCGGCGAAACTCGTTGTGTGGCAAATGCTGAAAGGTTTGAGC
TATCTACACTCTAAGAACATTGTACATAGAGATATTAAGCCAGAGAATGT
GCTTGTACAAGCTGTCAATCCGCTTATTGTGCGAATTACCGACTTCGGCT
TCGCCAACTTTGTAGATCCTTCCAGTAGCGCCCCTCAAACTGACCTTAAA
AGCATGGTCGGGACGGGATGCTACATGGCTCCTGAAGTTGTGGATGCAAG
AGGTCACGGTAAACCTGTAGATGTATATTCTACGGGCGTGGTTATGTTTC
GCCTGTTGAGCGGGAGGCTGCCGTTTCGTGGCATGACGCTGCGAGAATGC
TATAAACAGGCAATGAAAGAAGAAGCGGATTTCCACACACGCGAATGGGC
TGGGATTTCCCGTGAGGCGAAGGAGCTTTGCAAGAGAATGCTGAGCTCAA
AACCGGATTCGAGGCCGTCTGCTGAGAATGCTTTGGTACATCGCTGGTTC
ACCGATGACAAAGAGTTCAAGAATGGAGTAGAATCCATTGAGGGTGTTGC
TTCATGA
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Coding sequence (CDS) from alignment at tig00000068_pilon:619625..620881+

>Ggra5940.t1 ID=Ggra5940.t1|Name=Ggra5940.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1257bp|location=Sequence derived from alignment at tig00000068_pilon:619625..620881+ (Gracilaria gracilis GNS1m male)
ATGAACACGCCGAGAACCAAACGAAGTCTTCTTCGCTTCAGGAATAGCTC
TTCTGTTCAGCATAATCGAGAAACATCGCCGGTGCTCGAGGATAATGAAG
AAGTCAAGTCTGCAAAATATCGGCAGTCGGTGGAGATGTCTGGGTGGGTG
TTGAAGTGTCAGCGCTTGCGAGCTGGTCATGTGAAACGATATTTTCGTTT
ACACAATTCCGTGCTCTCTAATCATCCACAACTCACTGCGCCTCCCACTT
GGGAAATTTCTGTGTCCAAATGTATTGTTCGAACAAATGAGCAGAAGAAT
CTCATCACTCTTAGACTGGTGGACAGACAGATTCGCTTTCAGCTTACCAC
TGAAGCTGAAATGAAGCGCTGGGCGGAGGCGATACGTTCAGGTTCTGTGT
GTAATATAGAAGACTTTTACCGTCTTGATGCCGAAATTGGACATGGTAGC
TTTGGAGCAGTCAGAATTGCGTTTGACATTTCTACCGACGAGAAGCGTGC
CGTGAAGATAGTCAAGCGAACTACAAATGCGAAGGAACTCGAATTTGTTC
AGAGAGAGATTGATGTACTTTTGTCCATTTCACATCCACATGTCGTTGGC
ACGCACGACATTTTTGACGAGAAGGATAAGATATACATGGTCATGGATTT
TGTCGAAGGTGGGGATTTATTTGATTTCATGGTACGGAAGACTAAGTTGA
GCGAGGACTCGGCGAAACTCGTTGTGTGGCAAATGCTGAAAGGTTTGAGC
TATCTACACTCTAAGAACATTGTACATAGAGATATTAAGCCAGAGAATGT
GCTTGTACAAGCTGTCAATCCGCTTATTGTGCGAATTACCGACTTCGGCT
TCGCCAACTTTGTAGATCCTTCCAGTAGCGCCCCTCAAACTGACCTTAAA
AGCATGGTCGGGACGGGATGCTACATGGCTCCTGAAGTTGTGGATGCAAG
AGGTCACGGTAAACCTGTAGATGTATATTCTACGGGCGTGGTTATGTTTC
GCCTGTTGAGCGGGAGGCTGCCGTTTCGTGGCATGACGCTGCGAGAATGC
TATAAACAGGCAATGAAAGAAGAAGCGGATTTCCACACACGCGAATGGGC
TGGGATTTCCCGTGAGGCGAAGGAGCTTTGCAAGAGAATGCTGAGCTCAA
AACCGGATTCGAGGCCGTCTGCTGAGAATGCTTTGGTACATCGCTGGTTC
ACCGATGACAAAGAGTTCAAGAATGGAGTAGAATCCATTGAGGGTGTTGC
TTCATGA
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