Ggra4721.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4721.t1
Unique Name	Ggra4721.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	183

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000065_pilon	contig	tig00000065_pilon:69174..69722 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707395.1
Preferred name	MCTS1
PFAMs	PUA
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02883,ko:K07575
KEGG Pathway	ko03010,map03010
KEGG Module	M00177,M00179
GOs	GO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0016032,GO:0016043,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0042127,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0075522,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1990904,GO:2000112
Evalue	1.49e-59
EggNOG OGs	COG2016@1\|root,KOG2523@2759\|Eukaryota
Description	formation of translation preinitiation complex
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4721	Ggra4721	Gracilaria gracilis GNS1m male	gene	tig00000065_pilon 69174..69722 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4721.t1.start1	Ggra4721.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000065_pilon 69174..69176 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4721.t1.CDS1	Ggra4721.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000065_pilon 69174..69722 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4721.t1.exon1	Ggra4721.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000065_pilon 69174..69722 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4721.t1.stop1	Ggra4721.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000065_pilon 69720..69722 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4721.t1	Ggra4721.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000065_pilon 69174..69722 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000065_pilon:69174..69722+
coding sequence from alignment at tig00000065_pilon:69174..69722+

mRNA sequence

>Ggra4721.t1 ID=Ggra4721.t1|Name=Ggra4721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=183bp
MFKRFSPDSVSAQSAMKSSQQRAARANIVRHMPSVAPYCQQLFPKKEKTI
LVKCSAHLSVLCTAAGHPIFFHTRNGEYLPTLRTLHKYPFLLPSLRVDRG
AIKHVINGADIMVPGLRSERAVIESEVDAGTPVAIFADGKEHAIAVGITR
MSSAHIRATDKGIAVENLHYVSDGLWKCIQLS*

spliced messenger RNA

>Ggra4721.t1 ID=Ggra4721.t1|Name=Ggra4721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000065_pilon:69174..69722+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAGCGCTTCTCGCCCGACAGCGTGTCGGCGCAGTCCGCCATGAA
GTCGTCGCAGCAGCGCGCCGCGCGCGCCAACATCGTGCGCCACATGCCAT
CAGTCGCGCCCTACTGCCAGCAGCTGTTCCCCAAGAAGGAGAAGACCATC
CTGGTCAAGTGCTCGGCGCACCTGTCCGTGCTGTGCACTGCCGCGGGACA
CCCCATCTTCTTCCACACGCGCAACGGCGAGTATCTGCCCACCTTGCGCA
CGCTGCACAAGTACCCCTTCCTGCTGCCGTCGCTGCGCGTCGACCGCGGC
GCTATCAAACACGTCATCAACGGCGCCGATATCATGGTGCCCGGCCTGCG
CTCCGAGCGCGCTGTCATCGAGAGCGAGGTCGATGCTGGCACACCCGTCG
CCATCTTTGCCGATGGGAAGGAGCATGCCATTGCCGTCGGCATTACGCGC
ATGTCCTCCGCCCACATTCGCGCAACCGATAAGGGCATTGCCGTCGAGAA
CCTGCATTATGTGTCCGATGGGCTGTGGAAGTGCATTCAACTGTCCTAG

protein sequence of Ggra4721.t1

>Ggra4721.t1 ID=Ggra4721.t1|Name=Ggra4721.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=183bp
MFKRFSPDSVSAQSAMKSSQQRAARANIVRHMPSVAPYCQQLFPKKEKTI
LVKCSAHLSVLCTAAGHPIFFHTRNGEYLPTLRTLHKYPFLLPSLRVDRG
AIKHVINGADIMVPGLRSERAVIESEVDAGTPVAIFADGKEHAIAVGITR
MSSAHIRATDKGIAVENLHYVSDGLWKCIQLS*

mRNA from alignment at tig00000065_pilon:69174..69722+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4721.t1 ID=Ggra4721.t1|Name=Ggra4721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000065_pilon:69174..69722+ (Gracilaria gracilis GNS1m male)
ATGTTCAAGCGCTTCTCGCCCGACAGCGTGTCGGCGCAGTCCGCCATGAA
GTCGTCGCAGCAGCGCGCCGCGCGCGCCAACATCGTGCGCCACATGCCAT
CAGTCGCGCCCTACTGCCAGCAGCTGTTCCCCAAGAAGGAGAAGACCATC
CTGGTCAAGTGCTCGGCGCACCTGTCCGTGCTGTGCACTGCCGCGGGACA
CCCCATCTTCTTCCACACGCGCAACGGCGAGTATCTGCCCACCTTGCGCA
CGCTGCACAAGTACCCCTTCCTGCTGCCGTCGCTGCGCGTCGACCGCGGC
GCTATCAAACACGTCATCAACGGCGCCGATATCATGGTGCCCGGCCTGCG
CTCCGAGCGCGCTGTCATCGAGAGCGAGGTCGATGCTGGCACACCCGTCG
CCATCTTTGCCGATGGGAAGGAGCATGCCATTGCCGTCGGCATTACGCGC
ATGTCCTCCGCCCACATTCGCGCAACCGATAAGGGCATTGCCGTCGAGAA
CCTGCATTATGTGTCCGATGGGCTGTGGAAGTGCATTCAACTGTCCTAG

Coding sequence (CDS) from alignment at tig00000065_pilon:69174..69722+

>Ggra4721.t1 ID=Ggra4721.t1|Name=Ggra4721.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=549bp|location=Sequence derived from alignment at tig00000065_pilon:69174..69722+ (Gracilaria gracilis GNS1m male)
ATGTTCAAGCGCTTCTCGCCCGACAGCGTGTCGGCGCAGTCCGCCATGAA
GTCGTCGCAGCAGCGCGCCGCGCGCGCCAACATCGTGCGCCACATGCCAT
CAGTCGCGCCCTACTGCCAGCAGCTGTTCCCCAAGAAGGAGAAGACCATC
CTGGTCAAGTGCTCGGCGCACCTGTCCGTGCTGTGCACTGCCGCGGGACA
CCCCATCTTCTTCCACACGCGCAACGGCGAGTATCTGCCCACCTTGCGCA
CGCTGCACAAGTACCCCTTCCTGCTGCCGTCGCTGCGCGTCGACCGCGGC
GCTATCAAACACGTCATCAACGGCGCCGATATCATGGTGCCCGGCCTGCG
CTCCGAGCGCGCTGTCATCGAGAGCGAGGTCGATGCTGGCACACCCGTCG
CCATCTTTGCCGATGGGAAGGAGCATGCCATTGCCGTCGGCATTACGCGC
ATGTCCTCCGCCCACATTCGCGCAACCGATAAGGGCATTGCCGTCGAGAA
CCTGCATTATGTGTCCGATGGGCTGTGGAAGTGCATTCAACTGTCCTAG