Ggra4716.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4716.t1
Unique NameGgra4716.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:55238..56167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4716Ggra4716Gracilaria gracilis GNS1m malegenetig00000065_pilon 55238..56167 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4716.t1.start1Ggra4716.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 55238..55240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4716.t1.CDS1Ggra4716.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 55238..56167 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4716.t1.exon1Ggra4716.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 55238..56167 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4716.t1.stop1Ggra4716.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 56165..56167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4716.t1Ggra4716.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 55238..56167 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4716.t1 ID=Ggra4716.t1|Name=Ggra4716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=310bp
MLQLSATQQLLILLIICLTSVRAKAQSMRAGCAPSSEVEEALHRAEQSAS
QWLGKDGAQALMESLKQNGKRHSDGTICFSQSDFEHFGTLASQLYQEVET
TDRQYRPEFSGTEQDESLGSSSQCVCLVCGKSYVSYCDRSFRAKCCPTFC
KNIFSAMAVAALSGVEGSGLESCCDDGSKRCPATKPNSRSAKKAKEKATE
TPTFNFHRNTAQLNVLPGRVQPTVTPTVESKVPSRGPEIEDMNGQEGDPV
NEPTLEVSQGSSLSTGRPTSQLTHQGTDSVDQKPLVQEVGVTDLLEDEDV
PIPTSEEGV*
back to top

spliced messenger RNA

>Ggra4716.t1 ID=Ggra4716.t1|Name=Ggra4716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000065_pilon:55238..56167+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCAGCTTTCGGCTACTCAACAACTCCTAATTCTACTAATCATATG
CTTGACCAGTGTGCGAGCAAAGGCTCAGTCCATGCGAGCAGGTTGTGCAC
CCAGTTCGGAAGTTGAGGAAGCGCTACATCGAGCTGAACAAAGTGCGAGT
CAGTGGTTAGGAAAGGACGGGGCACAAGCACTAATGGAATCGCTGAAGCA
AAATGGAAAGCGACACTCTGACGGAACCATTTGTTTCTCGCAGTCAGACT
TTGAACATTTCGGTACTCTCGCTAGTCAGCTGTATCAGGAGGTCGAAACG
ACTGACAGGCAATATCGACCAGAGTTTTCTGGAACTGAACAAGACGAGTC
ATTGGGGAGCTCTTCTCAATGCGTGTGTTTGGTGTGCGGGAAATCTTATG
TTTCGTATTGTGATCGTAGCTTCCGTGCCAAGTGTTGTCCTACGTTCTGC
AAAAACATCTTTTCGGCCATGGCGGTAGCAGCGCTCTCCGGAGTCGAAGG
GAGTGGACTCGAGTCGTGCTGCGATGATGGAAGCAAACGTTGCCCAGCGA
CGAAGCCAAACTCTCGAAGCGCAAAGAAGGCAAAGGAAAAGGCTACGGAA
ACGCCTACATTCAACTTTCACCGCAATACTGCACAATTAAACGTGCTCCC
AGGGCGAGTTCAACCAACAGTAACACCGACAGTGGAAAGTAAAGTGCCTT
CGAGAGGTCCAGAAATAGAAGACATGAACGGACAGGAAGGGGATCCCGTG
AACGAACCGACCCTGGAGGTTTCGCAAGGAAGTAGTTTGTCTACAGGACG
GCCGACGTCTCAACTAACGCACCAGGGTACAGATTCAGTTGATCAGAAGC
CATTGGTTCAAGAAGTGGGAGTGACGGATCTGCTTGAGGACGAGGACGTT
CCAATTCCAACCTCGGAGGAAGGTGTCTGA
back to top

protein sequence of Ggra4716.t1

>Ggra4716.t1 ID=Ggra4716.t1|Name=Ggra4716.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MLQLSATQQLLILLIICLTSVRAKAQSMRAGCAPSSEVEEALHRAEQSAS
QWLGKDGAQALMESLKQNGKRHSDGTICFSQSDFEHFGTLASQLYQEVET
TDRQYRPEFSGTEQDESLGSSSQCVCLVCGKSYVSYCDRSFRAKCCPTFC
KNIFSAMAVAALSGVEGSGLESCCDDGSKRCPATKPNSRSAKKAKEKATE
TPTFNFHRNTAQLNVLPGRVQPTVTPTVESKVPSRGPEIEDMNGQEGDPV
NEPTLEVSQGSSLSTGRPTSQLTHQGTDSVDQKPLVQEVGVTDLLEDEDV
PIPTSEEGV*
back to top

mRNA from alignment at tig00000065_pilon:55238..56167+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4716.t1 ID=Ggra4716.t1|Name=Ggra4716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000065_pilon:55238..56167+ (Gracilaria gracilis GNS1m male)
ATGCTTCAGCTTTCGGCTACTCAACAACTCCTAATTCTACTAATCATATG
CTTGACCAGTGTGCGAGCAAAGGCTCAGTCCATGCGAGCAGGTTGTGCAC
CCAGTTCGGAAGTTGAGGAAGCGCTACATCGAGCTGAACAAAGTGCGAGT
CAGTGGTTAGGAAAGGACGGGGCACAAGCACTAATGGAATCGCTGAAGCA
AAATGGAAAGCGACACTCTGACGGAACCATTTGTTTCTCGCAGTCAGACT
TTGAACATTTCGGTACTCTCGCTAGTCAGCTGTATCAGGAGGTCGAAACG
ACTGACAGGCAATATCGACCAGAGTTTTCTGGAACTGAACAAGACGAGTC
ATTGGGGAGCTCTTCTCAATGCGTGTGTTTGGTGTGCGGGAAATCTTATG
TTTCGTATTGTGATCGTAGCTTCCGTGCCAAGTGTTGTCCTACGTTCTGC
AAAAACATCTTTTCGGCCATGGCGGTAGCAGCGCTCTCCGGAGTCGAAGG
GAGTGGACTCGAGTCGTGCTGCGATGATGGAAGCAAACGTTGCCCAGCGA
CGAAGCCAAACTCTCGAAGCGCAAAGAAGGCAAAGGAAAAGGCTACGGAA
ACGCCTACATTCAACTTTCACCGCAATACTGCACAATTAAACGTGCTCCC
AGGGCGAGTTCAACCAACAGTAACACCGACAGTGGAAAGTAAAGTGCCTT
CGAGAGGTCCAGAAATAGAAGACATGAACGGACAGGAAGGGGATCCCGTG
AACGAACCGACCCTGGAGGTTTCGCAAGGAAGTAGTTTGTCTACAGGACG
GCCGACGTCTCAACTAACGCACCAGGGTACAGATTCAGTTGATCAGAAGC
CATTGGTTCAAGAAGTGGGAGTGACGGATCTGCTTGAGGACGAGGACGTT
CCAATTCCAACCTCGGAGGAAGGTGTCTGA
back to top

Coding sequence (CDS) from alignment at tig00000065_pilon:55238..56167+

>Ggra4716.t1 ID=Ggra4716.t1|Name=Ggra4716.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00000065_pilon:55238..56167+ (Gracilaria gracilis GNS1m male)
ATGCTTCAGCTTTCGGCTACTCAACAACTCCTAATTCTACTAATCATATG
CTTGACCAGTGTGCGAGCAAAGGCTCAGTCCATGCGAGCAGGTTGTGCAC
CCAGTTCGGAAGTTGAGGAAGCGCTACATCGAGCTGAACAAAGTGCGAGT
CAGTGGTTAGGAAAGGACGGGGCACAAGCACTAATGGAATCGCTGAAGCA
AAATGGAAAGCGACACTCTGACGGAACCATTTGTTTCTCGCAGTCAGACT
TTGAACATTTCGGTACTCTCGCTAGTCAGCTGTATCAGGAGGTCGAAACG
ACTGACAGGCAATATCGACCAGAGTTTTCTGGAACTGAACAAGACGAGTC
ATTGGGGAGCTCTTCTCAATGCGTGTGTTTGGTGTGCGGGAAATCTTATG
TTTCGTATTGTGATCGTAGCTTCCGTGCCAAGTGTTGTCCTACGTTCTGC
AAAAACATCTTTTCGGCCATGGCGGTAGCAGCGCTCTCCGGAGTCGAAGG
GAGTGGACTCGAGTCGTGCTGCGATGATGGAAGCAAACGTTGCCCAGCGA
CGAAGCCAAACTCTCGAAGCGCAAAGAAGGCAAAGGAAAAGGCTACGGAA
ACGCCTACATTCAACTTTCACCGCAATACTGCACAATTAAACGTGCTCCC
AGGGCGAGTTCAACCAACAGTAACACCGACAGTGGAAAGTAAAGTGCCTT
CGAGAGGTCCAGAAATAGAAGACATGAACGGACAGGAAGGGGATCCCGTG
AACGAACCGACCCTGGAGGTTTCGCAAGGAAGTAGTTTGTCTACAGGACG
GCCGACGTCTCAACTAACGCACCAGGGTACAGATTCAGTTGATCAGAAGC
CATTGGTTCAAGAAGTGGGAGTGACGGATCTGCTTGAGGACGAGGACGTT
CCAATTCCAACCTCGGAGGAAGGTGTCTGA
back to top