Ggra4726.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4726.t1
Unique NameGgra4726.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:77393..78392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4726Ggra4726Gracilaria gracilis GNS1m malegenetig00000065_pilon 77393..78392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4726.t1Ggra4726.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 77393..78392 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4726.t1.start1Ggra4726.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 77393..77395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4726.t1.CDS1Ggra4726.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 77393..77975 +
Ggra4726.t1.CDS2Ggra4726.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000065_pilon 78038..78171 +
Ggra4726.t1.CDS3Ggra4726.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000065_pilon 78240..78392 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4726.t1.exon1Ggra4726.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 77393..77975 +
Ggra4726.t1.exon2Ggra4726.t1.exon2Gracilaria gracilis GNS1m maleexontig00000065_pilon 78038..78171 +
Ggra4726.t1.exon3Ggra4726.t1.exon3Gracilaria gracilis GNS1m maleexontig00000065_pilon 78240..78392 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4726.t1.intron1Ggra4726.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000065_pilon 77976..78037 +
Ggra4726.t1.intron2Ggra4726.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000065_pilon 78172..78239 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4726.t1.stop1Ggra4726.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 78390..78392 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4726.t1 ID=Ggra4726.t1|Name=Ggra4726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=290bp
MPFLVLAPRSRTVQLGLAKPFPQLALPHSQLPLQPALTFATRLLIVCAQN
FSLTKSQLSNHELVVACPSVGLPFERRRVLRNGADLLNMSIRFFSPYDCI
RAVASRECTVIDIDFNHTIVFDATRVEAIAVGFRHITESVIHVIPSAEDA
ERVMRSAGVIAHSEQQQLGDVALESGTLKAEQRRHAAHVLFGDDEEQNLA
CCMARFLRDERDVYSRVEKRWVFCIGEGALPGVTERLQKEFENCRDRYGL
KIKLKTVTSDFEGSIVAWAGAAILATAGATGDDDEDRIR*
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spliced messenger RNA

>Ggra4726.t1 ID=Ggra4726.t1|Name=Ggra4726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000065_pilon:77393..78392+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTTCCTCGTTCTGGCGCCTCGCTCGCGTACCGTTCAGCTCGGGCT
TGCAAAGCCCTTTCCGCAGCTCGCTCTCCCTCACTCTCAGCTCCCTCTAC
AACCCGCGCTCACGTTTGCCACGCGCTTGCTCATCGTGTGCGCCCAGAAC
TTTTCGCTCACCAAATCGCAGCTGAGCAATCATGAGCTGGTGGTGGCGTG
CCCAAGCGTGGGCCTACCGTTCGAAAGGCGACGCGTGTTGCGAAACGGCG
CCGATCTGTTGAACATGTCCATTCGCTTCTTCTCGCCGTACGACTGCATC
AGAGCCGTGGCGTCTCGAGAGTGTACCGTGATCGATATTGACTTCAACCA
TACCATCGTTTTCGACGCCACTCGAGTCGAGGCGATTGCGGTGGGATTCA
GACACATTACAGAAAGCGTGATTCACGTGATTCCATCGGCGGAGGATGCT
GAGCGCGTTATGAGAAGCGCCGGCGTGATTGCACACTCCGAACAACAACA
GCTTGGCGACGTGGCGCTTGAGTCAGGCACGCTCAAAGCGGAACAGCGCC
GACACGCTGCTCATGTTCTGTTCGGGGACGACGAGGAGCAAAACCTGGCG
TGCTGTATGGCACGGTTTCTTCGTGACGAACGCGATGTGTACTCGCGAGT
GGAGAAGAGATGGGTGTTCTGCATCGGAGAAGGCGCTCTGCCAGGAGTGA
CGGAGCGATTACAAAAGGAGTTCGAAAACTGTAGGGACAGATATGGGTTG
AAGATCAAGCTCAAGACGGTAACGAGTGATTTCGAGGGGTCAATCGTAGC
GTGGGCGGGCGCAGCAATCCTGGCGACCGCCGGCGCTACGGGCGATGACG
ACGAAGATCGCATCAGGTGA
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protein sequence of Ggra4726.t1

>Ggra4726.t1 ID=Ggra4726.t1|Name=Ggra4726.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=290bp
MPFLVLAPRSRTVQLGLAKPFPQLALPHSQLPLQPALTFATRLLIVCAQN
FSLTKSQLSNHELVVACPSVGLPFERRRVLRNGADLLNMSIRFFSPYDCI
RAVASRECTVIDIDFNHTIVFDATRVEAIAVGFRHITESVIHVIPSAEDA
ERVMRSAGVIAHSEQQQLGDVALESGTLKAEQRRHAAHVLFGDDEEQNLA
CCMARFLRDERDVYSRVEKRWVFCIGEGALPGVTERLQKEFENCRDRYGL
KIKLKTVTSDFEGSIVAWAGAAILATAGATGDDDEDRIR*
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mRNA from alignment at tig00000065_pilon:77393..78392+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4726.t1 ID=Ggra4726.t1|Name=Ggra4726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1000bp|location=Sequence derived from alignment at tig00000065_pilon:77393..78392+ (Gracilaria gracilis GNS1m male)
ATGCCCTTCCTCGTTCTGGCGCCTCGCTCGCGTACCGTTCAGCTCGGGCT
TGCAAAGCCCTTTCCGCAGCTCGCTCTCCCTCACTCTCAGCTCCCTCTAC
AACCCGCGCTCACGTTTGCCACGCGCTTGCTCATCGTGTGCGCCCAGAAC
TTTTCGCTCACCAAATCGCAGCTGAGCAATCATGAGCTGGTGGTGGCGTG
CCCAAGCGTGGGCCTACCGTTCGAAAGGCGACGCGTGTTGCGAAACGGCG
CCGATCTGTTGAACATGTCCATTCGCTTCTTCTCGCCGTACGACTGCATC
AGAGCCGTGGCGTCTCGAGAGTGTACCGTGATCGATATTGACTTCAACCA
TACCATCGTTTTCGACGCCACTCGAGTCGAGGCGATTGCGGTGGGATTCA
GACACATTACAGAAAGCGTGATTCACGTGATTCCATCGGCGGAGGATGCT
GAGCGCGTTATGAGAAGCGCCGGCGTGATTGCACACTCCGAACAACAACA
GCTTGGCGACGTGGCGCTTGAGTCAGGCACGCTCAAAGCGGAACAGCGCC
GACACGCTGCTCATGTTCTGTTCGGGGACGACGGTAAGTCAAATCTGCAC
CGGGATCTGTTCGGTACCTATTCTTTCTAACCTGTCATGATTCAGAGGAG
CAAAACCTGGCGTGCTGTATGGCACGGTTTCTTCGTGACGAACGCGATGT
GTACTCGCGAGTGGAGAAGAGATGGGTGTTCTGCATCGGAGAAGGCGCTC
TGCCAGGAGTGACGGAGCGATTACAAAAGGTAAGATAAGCGGCCAGATGT
TGTTTGATTGGCCGTGCCCAGATTGCATATCTAACGCAATTACAAAGGAG
TTCGAAAACTGTAGGGACAGATATGGGTTGAAGATCAAGCTCAAGACGGT
AACGAGTGATTTCGAGGGGTCAATCGTAGCGTGGGCGGGCGCAGCAATCC
TGGCGACCGCCGGCGCTACGGGCGATGACGACGAAGATCGCATCAGGTGA
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Coding sequence (CDS) from alignment at tig00000065_pilon:77393..78392+

>Ggra4726.t1 ID=Ggra4726.t1|Name=Ggra4726.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000065_pilon:77393..78392+ (Gracilaria gracilis GNS1m male)
ATGCCCTTCCTCGTTCTGGCGCCTCGCTCGCGTACCGTTCAGCTCGGGCT
TGCAAAGCCCTTTCCGCAGCTCGCTCTCCCTCACTCTCAGCTCCCTCTAC
AACCCGCGCTCACGTTTGCCACGCGCTTGCTCATCGTGTGCGCCCAGAAC
TTTTCGCTCACCAAATCGCAGCTGAGCAATCATGAGCTGGTGGTGGCGTG
CCCAAGCGTGGGCCTACCGTTCGAAAGGCGACGCGTGTTGCGAAACGGCG
CCGATCTGTTGAACATGTCCATTCGCTTCTTCTCGCCGTACGACTGCATC
AGAGCCGTGGCGTCTCGAGAGTGTACCGTGATCGATATTGACTTCAACCA
TACCATCGTTTTCGACGCCACTCGAGTCGAGGCGATTGCGGTGGGATTCA
GACACATTACAGAAAGCGTGATTCACGTGATTCCATCGGCGGAGGATGCT
GAGCGCGTTATGAGAAGCGCCGGCGTGATTGCACACTCCGAACAACAACA
GCTTGGCGACGTGGCGCTTGAGTCAGGCACGCTCAAAGCGGAACAGCGCC
GACACGCTGCTCATGTTCTGTTCGGGGACGACGAGGAGCAAAACCTGGCG
TGCTGTATGGCACGGTTTCTTCGTGACGAACGCGATGTGTACTCGCGAGT
GGAGAAGAGATGGGTGTTCTGCATCGGAGAAGGCGCTCTGCCAGGAGTGA
CGGAGCGATTACAAAAGGAGTTCGAAAACTGTAGGGACAGATATGGGTTG
AAGATCAAGCTCAAGACGGTAACGAGTGATTTCGAGGGGTCAATCGTAGC
GTGGGCGGGCGCAGCAATCCTGGCGACCGCCGGCGCTACGGGCGATGACG
ACGAAGATCGCATCAGGTGA
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