Ggra2741.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2741.t1
Unique NameGgra2741.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length515
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:1402803..1404347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S228_21V6.1
PFAMsAAA
Max annot lvl35493|Streptophyta
KEGG koko:K13525
KEGG TC3.A.16.1
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00400,M00403
Evalue1.01e-33
EggNOG OGsCOG0464@1|root,KOG0730@2759|Eukaryota,37RDE@33090|Viridiplantae,3GAEN@35493|Streptophyta
DescriptionBelongs to the AAA ATPase family
COG categoryO
BRITEko00000,ko00001,ko00002,ko03019,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2741Ggra2741Gracilaria gracilis GNS1m malegenetig00000005_pilon 1402803..1404347 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2741.t1.stop1Ggra2741.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 1402803..1402805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2741.t1.CDS1Ggra2741.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 1402803..1404347 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2741.t1.exon1Ggra2741.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 1402803..1404347 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2741.t1.start1Ggra2741.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 1404345..1404347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2741.t1Ggra2741.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 1402803..1404347 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2741.t1 ID=Ggra2741.t1|Name=Ggra2741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=515bp
MTREASSPPVADSLVFRLTWDSRAAPTASAALLRDYFLQSELPPPATPYE
LPFLPRPFSVVVVRCEPCNALHTTGDTHTYLLPPIPPSLNPPSAPDVETS
PPLHAVLRRALAMEPFSPRSILLLSEPGGGKSSVAAHAVWQSGATFIRLQ
PTHLSVSEAPALLKTLTYYANAAVAAGPSVLVLDDAHLTFAPFLNRYASS
FLAFRHYIREIPAVVLLVLATSHTDLHPSVVGAFDLLLPLPSRKAREQRP
KLDKQHIIKSWQQVSSVLPGAEGAETYLKRLLYHPVVLGDRLKKVGIRTP
NALLLYGAPGTGKTSLVREAAKATNTRLIPLQAAALARGEVGESERLLRF
HFEQAAADPPALIFLDEVDALFAPSMKRLPAVLGTILDNLSSGVKVVAAT
NAPWMVAKSLVRPGRIDRCVLVPLPNSDGRRKIGLVFSNQMQLKQAVAAH
VCVRAENSEGFTGADIQGACRRAALNALSDNREIDVRDVDIGFDAVKASV
DQAAARRIADWDVS*
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spliced messenger RNA

>Ggra2741.t1 ID=Ggra2741.t1|Name=Ggra2741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000005_pilon:1402803..1404347- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGAGAAGCTTCTTCGCCTCCAGTTGCAGACTCGCTCGTATTTCG
CCTAACCTGGGATTCTCGTGCCGCACCAACGGCGAGCGCTGCTCTTCTTC
GCGATTACTTTCTGCAAAGCGAATTACCTCCTCCAGCTACACCGTACGAG
CTCCCGTTTCTTCCGCGGCCGTTTTCAGTCGTCGTCGTACGATGCGAGCC
ATGCAATGCGCTTCACACAACCGGTGACACGCACACGTACTTGCTACCAC
CTATACCGCCCTCCTTGAACCCGCCTTCTGCTCCAGATGTCGAAACTTCA
CCGCCGTTGCATGCGGTGCTGCGGAGGGCGTTGGCTATGGAGCCATTCTC
ACCGAGGTCGATCCTTCTGCTGTCTGAACCGGGCGGGGGAAAGTCTTCTG
TTGCTGCCCATGCGGTTTGGCAGAGTGGTGCGACATTCATTCGATTGCAG
CCCACTCATCTGAGCGTTAGCGAGGCCCCAGCGCTCTTAAAAACTCTCAC
CTACTATGCGAACGCGGCTGTTGCTGCTGGACCATCAGTGCTCGTCTTAG
ATGACGCTCACCTTACGTTTGCCCCGTTTCTTAATCGCTATGCATCCAGC
TTTTTGGCGTTTCGGCACTATATCCGAGAGATTCCTGCTGTGGTCCTTCT
CGTTTTGGCTACCAGCCATACCGATTTGCATCCAAGCGTGGTTGGCGCTT
TTGACCTTCTGCTGCCTTTACCTTCCCGTAAAGCTCGCGAGCAGCGTCCC
AAATTGGACAAACAACATATTATCAAGTCGTGGCAACAAGTCAGCTCTGT
TCTTCCAGGAGCAGAAGGAGCAGAAACGTATTTAAAGCGTCTCTTGTATC
ATCCCGTCGTACTCGGAGATCGACTGAAAAAAGTAGGAATTCGCACCCCA
AACGCACTGCTCTTGTACGGAGCCCCGGGAACTGGAAAGACTTCGCTCGT
AAGAGAGGCTGCGAAAGCTACCAATACCCGTCTCATACCTTTGCAGGCAG
CGGCACTGGCTCGCGGAGAAGTGGGTGAATCAGAGCGTTTGCTGCGCTTC
CATTTTGAACAGGCTGCCGCAGATCCGCCTGCATTGATATTTCTCGACGA
GGTTGATGCACTCTTTGCTCCTTCGATGAAGAGATTGCCCGCCGTATTGG
GCACCATTTTGGATAATCTCTCTTCTGGTGTTAAAGTTGTCGCCGCTACG
AATGCGCCGTGGATGGTTGCTAAATCACTTGTGCGCCCCGGGAGGATCGA
CAGATGCGTTCTAGTTCCGTTGCCGAATTCGGATGGGCGAAGGAAAATCG
GCCTCGTGTTTTCAAATCAGATGCAGTTGAAGCAAGCGGTTGCTGCGCAT
GTCTGTGTTCGAGCGGAGAACTCTGAGGGCTTCACTGGAGCCGATATTCA
GGGCGCTTGTCGAAGAGCTGCTCTCAATGCCCTGAGCGATAACAGAGAGA
TTGATGTCAGAGATGTTGATATTGGGTTTGATGCCGTAAAGGCAAGTGTT
GACCAAGCAGCGGCTCGTAGAATTGCAGATTGGGATGTTTCTTAG
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protein sequence of Ggra2741.t1

>Ggra2741.t1 ID=Ggra2741.t1|Name=Ggra2741.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=515bp
MTREASSPPVADSLVFRLTWDSRAAPTASAALLRDYFLQSELPPPATPYE
LPFLPRPFSVVVVRCEPCNALHTTGDTHTYLLPPIPPSLNPPSAPDVETS
PPLHAVLRRALAMEPFSPRSILLLSEPGGGKSSVAAHAVWQSGATFIRLQ
PTHLSVSEAPALLKTLTYYANAAVAAGPSVLVLDDAHLTFAPFLNRYASS
FLAFRHYIREIPAVVLLVLATSHTDLHPSVVGAFDLLLPLPSRKAREQRP
KLDKQHIIKSWQQVSSVLPGAEGAETYLKRLLYHPVVLGDRLKKVGIRTP
NALLLYGAPGTGKTSLVREAAKATNTRLIPLQAAALARGEVGESERLLRF
HFEQAAADPPALIFLDEVDALFAPSMKRLPAVLGTILDNLSSGVKVVAAT
NAPWMVAKSLVRPGRIDRCVLVPLPNSDGRRKIGLVFSNQMQLKQAVAAH
VCVRAENSEGFTGADIQGACRRAALNALSDNREIDVRDVDIGFDAVKASV
DQAAARRIADWDVS*
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mRNA from alignment at tig00000005_pilon:1402803..1404347-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2741.t1 ID=Ggra2741.t1|Name=Ggra2741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000005_pilon:1402803..1404347- (Gracilaria gracilis GNS1m male)
ATGACGCGAGAAGCTTCTTCGCCTCCAGTTGCAGACTCGCTCGTATTTCG
CCTAACCTGGGATTCTCGTGCCGCACCAACGGCGAGCGCTGCTCTTCTTC
GCGATTACTTTCTGCAAAGCGAATTACCTCCTCCAGCTACACCGTACGAG
CTCCCGTTTCTTCCGCGGCCGTTTTCAGTCGTCGTCGTACGATGCGAGCC
ATGCAATGCGCTTCACACAACCGGTGACACGCACACGTACTTGCTACCAC
CTATACCGCCCTCCTTGAACCCGCCTTCTGCTCCAGATGTCGAAACTTCA
CCGCCGTTGCATGCGGTGCTGCGGAGGGCGTTGGCTATGGAGCCATTCTC
ACCGAGGTCGATCCTTCTGCTGTCTGAACCGGGCGGGGGAAAGTCTTCTG
TTGCTGCCCATGCGGTTTGGCAGAGTGGTGCGACATTCATTCGATTGCAG
CCCACTCATCTGAGCGTTAGCGAGGCCCCAGCGCTCTTAAAAACTCTCAC
CTACTATGCGAACGCGGCTGTTGCTGCTGGACCATCAGTGCTCGTCTTAG
ATGACGCTCACCTTACGTTTGCCCCGTTTCTTAATCGCTATGCATCCAGC
TTTTTGGCGTTTCGGCACTATATCCGAGAGATTCCTGCTGTGGTCCTTCT
CGTTTTGGCTACCAGCCATACCGATTTGCATCCAAGCGTGGTTGGCGCTT
TTGACCTTCTGCTGCCTTTACCTTCCCGTAAAGCTCGCGAGCAGCGTCCC
AAATTGGACAAACAACATATTATCAAGTCGTGGCAACAAGTCAGCTCTGT
TCTTCCAGGAGCAGAAGGAGCAGAAACGTATTTAAAGCGTCTCTTGTATC
ATCCCGTCGTACTCGGAGATCGACTGAAAAAAGTAGGAATTCGCACCCCA
AACGCACTGCTCTTGTACGGAGCCCCGGGAACTGGAAAGACTTCGCTCGT
AAGAGAGGCTGCGAAAGCTACCAATACCCGTCTCATACCTTTGCAGGCAG
CGGCACTGGCTCGCGGAGAAGTGGGTGAATCAGAGCGTTTGCTGCGCTTC
CATTTTGAACAGGCTGCCGCAGATCCGCCTGCATTGATATTTCTCGACGA
GGTTGATGCACTCTTTGCTCCTTCGATGAAGAGATTGCCCGCCGTATTGG
GCACCATTTTGGATAATCTCTCTTCTGGTGTTAAAGTTGTCGCCGCTACG
AATGCGCCGTGGATGGTTGCTAAATCACTTGTGCGCCCCGGGAGGATCGA
CAGATGCGTTCTAGTTCCGTTGCCGAATTCGGATGGGCGAAGGAAAATCG
GCCTCGTGTTTTCAAATCAGATGCAGTTGAAGCAAGCGGTTGCTGCGCAT
GTCTGTGTTCGAGCGGAGAACTCTGAGGGCTTCACTGGAGCCGATATTCA
GGGCGCTTGTCGAAGAGCTGCTCTCAATGCCCTGAGCGATAACAGAGAGA
TTGATGTCAGAGATGTTGATATTGGGTTTGATGCCGTAAAGGCAAGTGTT
GACCAAGCAGCGGCTCGTAGAATTGCAGATTGGGATGTTTCTTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:1402803..1404347-

>Ggra2741.t1 ID=Ggra2741.t1|Name=Ggra2741.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1545bp|location=Sequence derived from alignment at tig00000005_pilon:1402803..1404347- (Gracilaria gracilis GNS1m male)
ATGACGCGAGAAGCTTCTTCGCCTCCAGTTGCAGACTCGCTCGTATTTCG
CCTAACCTGGGATTCTCGTGCCGCACCAACGGCGAGCGCTGCTCTTCTTC
GCGATTACTTTCTGCAAAGCGAATTACCTCCTCCAGCTACACCGTACGAG
CTCCCGTTTCTTCCGCGGCCGTTTTCAGTCGTCGTCGTACGATGCGAGCC
ATGCAATGCGCTTCACACAACCGGTGACACGCACACGTACTTGCTACCAC
CTATACCGCCCTCCTTGAACCCGCCTTCTGCTCCAGATGTCGAAACTTCA
CCGCCGTTGCATGCGGTGCTGCGGAGGGCGTTGGCTATGGAGCCATTCTC
ACCGAGGTCGATCCTTCTGCTGTCTGAACCGGGCGGGGGAAAGTCTTCTG
TTGCTGCCCATGCGGTTTGGCAGAGTGGTGCGACATTCATTCGATTGCAG
CCCACTCATCTGAGCGTTAGCGAGGCCCCAGCGCTCTTAAAAACTCTCAC
CTACTATGCGAACGCGGCTGTTGCTGCTGGACCATCAGTGCTCGTCTTAG
ATGACGCTCACCTTACGTTTGCCCCGTTTCTTAATCGCTATGCATCCAGC
TTTTTGGCGTTTCGGCACTATATCCGAGAGATTCCTGCTGTGGTCCTTCT
CGTTTTGGCTACCAGCCATACCGATTTGCATCCAAGCGTGGTTGGCGCTT
TTGACCTTCTGCTGCCTTTACCTTCCCGTAAAGCTCGCGAGCAGCGTCCC
AAATTGGACAAACAACATATTATCAAGTCGTGGCAACAAGTCAGCTCTGT
TCTTCCAGGAGCAGAAGGAGCAGAAACGTATTTAAAGCGTCTCTTGTATC
ATCCCGTCGTACTCGGAGATCGACTGAAAAAAGTAGGAATTCGCACCCCA
AACGCACTGCTCTTGTACGGAGCCCCGGGAACTGGAAAGACTTCGCTCGT
AAGAGAGGCTGCGAAAGCTACCAATACCCGTCTCATACCTTTGCAGGCAG
CGGCACTGGCTCGCGGAGAAGTGGGTGAATCAGAGCGTTTGCTGCGCTTC
CATTTTGAACAGGCTGCCGCAGATCCGCCTGCATTGATATTTCTCGACGA
GGTTGATGCACTCTTTGCTCCTTCGATGAAGAGATTGCCCGCCGTATTGG
GCACCATTTTGGATAATCTCTCTTCTGGTGTTAAAGTTGTCGCCGCTACG
AATGCGCCGTGGATGGTTGCTAAATCACTTGTGCGCCCCGGGAGGATCGA
CAGATGCGTTCTAGTTCCGTTGCCGAATTCGGATGGGCGAAGGAAAATCG
GCCTCGTGTTTTCAAATCAGATGCAGTTGAAGCAAGCGGTTGCTGCGCAT
GTCTGTGTTCGAGCGGAGAACTCTGAGGGCTTCACTGGAGCCGATATTCA
GGGCGCTTGTCGAAGAGCTGCTCTCAATGCCCTGAGCGATAACAGAGAGA
TTGATGTCAGAGATGTTGATATTGGGTTTGATGCCGTAAAGGCAAGTGTT
GACCAAGCAGCGGCTCGTAGAATTGCAGATTGGGATGTTTCTTAG
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