Ggra4661.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4661.t1
Unique Name	Ggra4661.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	459

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000061_pilon	contig	tig00000061_pilon:600508..601884 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	319224.Sputcn32_0057
PFAMs	Abhydrolase_1,Abhydrolase_4
Max annot lvl	1236\|Gammaproteobacteria
Evalue	2.77e-23
EggNOG OGs	COG0596@1\|root,COG0596@2\|Bacteria,1R6KU@1224\|Proteobacteria,1RNTQ@1236\|Gammaproteobacteria,2QAGI@267890\|Shewanellaceae
Description	PFAM alpha beta hydrolase fold
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4661	Ggra4661	Gracilaria gracilis GNS1m male	gene	tig00000061_pilon 600508..601884 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4661.t1.start1	Ggra4661.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000061_pilon 600508..600510 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4661.t1.CDS1	Ggra4661.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000061_pilon 600508..601884 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4661.t1.exon1	Ggra4661.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000061_pilon 600508..601884 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4661.t1.stop1	Ggra4661.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000061_pilon 601882..601884 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4661.t1	Ggra4661.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000061_pilon 600508..601884 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000061_pilon:600508..601884+
coding sequence from alignment at tig00000061_pilon:600508..601884+

mRNA sequence

>Ggra4661.t1 ID=Ggra4661.t1|Name=Ggra4661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=459bp
MVPSSFLLLLPFLVLPSLVSAVLEPIPCPLHLSNSTCGKLSVPLDHANPA
DSVNISILYAITYPSIQTNSSSAFVFIQGGPGLSVLEHRTEGLASLELVN
AMKRPVILFDQRGTGNASLLNCSLQLSFDLDLLDTQRCLSQIGDDVLHYS
VTAIVNDLETLRKALGFEQLDLFGISYGTLISQAYGVLYPDSVRSILLDS
PVPMRYKDIYQVRHHSAYARIHAEKNKYNPNFSPAEFNDQMKTVLRRLRW
NRALREDLRMNPRQLFQMYRFTFDSLADAVSMAADKKNYTALTEIAKYME
PSSTPLRSFSVAMAVSTLCNSIVDLVPWDVDAPLLERLGTLVYDVLHRVG
LRDFSPFYMTEGFESMAKHCPAMPFRQLRREGLPLDKGPQKEIPTLVLVG
DLDSLTPIEDVVDLDPVFKKNVAVVKGAGHAVSLHPCGDHLFLEFAIDGL
VRNLSVCE*

spliced messenger RNA

>Ggra4661.t1 ID=Ggra4661.t1|Name=Ggra4661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000061_pilon:600508..601884+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCCTCTTCGTTCTTGCTCCTCCTTCCTTTCCTTGTGCTTCCCTC
TTTGGTCTCCGCCGTGTTAGAGCCCATTCCCTGCCCACTTCATCTTTCCA
ATTCGACTTGCGGGAAGCTCTCTGTGCCCCTCGACCATGCCAATCCTGCT
GATTCTGTCAACATATCCATTCTTTACGCCATAACATATCCTTCCATCCA
AACAAACTCTAGCAGTGCGTTTGTTTTCATTCAAGGAGGTCCTGGTCTCA
GCGTCTTGGAACATCGGACAGAGGGACTTGCATCTCTGGAGCTCGTGAAT
GCCATGAAACGCCCCGTGATCTTGTTTGATCAACGTGGCACTGGAAACGC
TTCTCTCCTCAATTGTTCGCTGCAGCTCTCATTTGACCTTGACCTTCTCG
ATACTCAGAGATGTCTCTCGCAGATTGGAGATGACGTTCTCCACTACTCC
GTGACTGCCATTGTGAATGATCTGGAAACGCTCCGGAAGGCCCTCGGTTT
TGAACAGCTGGATCTATTTGGCATATCATACggtactctcatatcacaag
cttatggcgtactgtatcccgacagcgttcgctcCATTCTGCTTGATTCA
CCTGTTCCTATGCGGTACAAAGACATTTATCAAGTGCGTCACCATTCCGC
ATATGCTCGAATTCACGCGGAGAAGAACAAATACAATCCAAACTTTTCTC
CAGCGGAGTTCAATGACCAGATGAAGACTGTTCTCCGCCGTCTACGTTGG
AACAGAGCTTTGCGAGAGGATCTGAGGATGAACCCGAGACAGTTGTTCCA
GATGTACCGATTCACATTCGATTCTTTGGCTGATGCGGTTTCCATGGCTG
CAGATAAAAAGAACTACACCGCCTTGACGGAAATTGCGAAATACATGGAG
CCTTCGAGCACACCTCTGCGTAGTTTCTCCGTCGCAATGGCCGTTTCCAC
CCTCTGCAACAGCATAGTGGATCTGGTTCCATGGGATGTGGACGCACCGT
TGCTCGAAAGGCTTGGAACGCTTGTGTACGATGTGCTTCATAGAGTGGGG
CTTCGAGACTTCTCTCCATTCTACATGACAGAAGGATTCGAGTCAATGGC
AAAGCACTGTCCCGCAATGCCTTTCCGTCAATTAAGGAGGGAAGGGCTCC
CTCTCGACAAGGGACCGCAGAAAGAAATTCCAACTCTGGTTCTTGTCGGC
GATCTGGATTCCTTAACCCCGATAGAAGACGTCGTGGATTTGGACCCTGT
ATTTAAGAAGAATGTGGCAGTTGTCAAAGGAGCGGGTCATGCTGTGAGTC
TCCACCCGTGCGGGGATCATCTGTTTTTGGAGTTTGCCATTGACGGATTG
GTAAGGAACCTGTCGGTTTGTGAATAG

protein sequence of Ggra4661.t1

>Ggra4661.t1 ID=Ggra4661.t1|Name=Ggra4661.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=459bp
MVPSSFLLLLPFLVLPSLVSAVLEPIPCPLHLSNSTCGKLSVPLDHANPA
DSVNISILYAITYPSIQTNSSSAFVFIQGGPGLSVLEHRTEGLASLELVN
AMKRPVILFDQRGTGNASLLNCSLQLSFDLDLLDTQRCLSQIGDDVLHYS
VTAIVNDLETLRKALGFEQLDLFGISYGTLISQAYGVLYPDSVRSILLDS
PVPMRYKDIYQVRHHSAYARIHAEKNKYNPNFSPAEFNDQMKTVLRRLRW
NRALREDLRMNPRQLFQMYRFTFDSLADAVSMAADKKNYTALTEIAKYME
PSSTPLRSFSVAMAVSTLCNSIVDLVPWDVDAPLLERLGTLVYDVLHRVG
LRDFSPFYMTEGFESMAKHCPAMPFRQLRREGLPLDKGPQKEIPTLVLVG
DLDSLTPIEDVVDLDPVFKKNVAVVKGAGHAVSLHPCGDHLFLEFAIDGL
VRNLSVCE*

mRNA from alignment at tig00000061_pilon:600508..601884+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4661.t1 ID=Ggra4661.t1|Name=Ggra4661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000061_pilon:600508..601884+ (Gracilaria gracilis GNS1m male)
ATGGTGCCCTCTTCGTTCTTGCTCCTCCTTCCTTTCCTTGTGCTTCCCTC
TTTGGTCTCCGCCGTGTTAGAGCCCATTCCCTGCCCACTTCATCTTTCCA
ATTCGACTTGCGGGAAGCTCTCTGTGCCCCTCGACCATGCCAATCCTGCT
GATTCTGTCAACATATCCATTCTTTACGCCATAACATATCCTTCCATCCA
AACAAACTCTAGCAGTGCGTTTGTTTTCATTCAAGGAGGTCCTGGTCTCA
GCGTCTTGGAACATCGGACAGAGGGACTTGCATCTCTGGAGCTCGTGAAT
GCCATGAAACGCCCCGTGATCTTGTTTGATCAACGTGGCACTGGAAACGC
TTCTCTCCTCAATTGTTCGCTGCAGCTCTCATTTGACCTTGACCTTCTCG
ATACTCAGAGATGTCTCTCGCAGATTGGAGATGACGTTCTCCACTACTCC
GTGACTGCCATTGTGAATGATCTGGAAACGCTCCGGAAGGCCCTCGGTTT
TGAACAGCTGGATCTATTTGGCATATCATACggtactctcatatcacaag
cttatggcgtactgtatcccgacagcgttcgctcCATTCTGCTTGATTCA
CCTGTTCCTATGCGGTACAAAGACATTTATCAAGTGCGTCACCATTCCGC
ATATGCTCGAATTCACGCGGAGAAGAACAAATACAATCCAAACTTTTCTC
CAGCGGAGTTCAATGACCAGATGAAGACTGTTCTCCGCCGTCTACGTTGG
AACAGAGCTTTGCGAGAGGATCTGAGGATGAACCCGAGACAGTTGTTCCA
GATGTACCGATTCACATTCGATTCTTTGGCTGATGCGGTTTCCATGGCTG
CAGATAAAAAGAACTACACCGCCTTGACGGAAATTGCGAAATACATGGAG
CCTTCGAGCACACCTCTGCGTAGTTTCTCCGTCGCAATGGCCGTTTCCAC
CCTCTGCAACAGCATAGTGGATCTGGTTCCATGGGATGTGGACGCACCGT
TGCTCGAAAGGCTTGGAACGCTTGTGTACGATGTGCTTCATAGAGTGGGG
CTTCGAGACTTCTCTCCATTCTACATGACAGAAGGATTCGAGTCAATGGC
AAAGCACTGTCCCGCAATGCCTTTCCGTCAATTAAGGAGGGAAGGGCTCC
CTCTCGACAAGGGACCGCAGAAAGAAATTCCAACTCTGGTTCTTGTCGGC
GATCTGGATTCCTTAACCCCGATAGAAGACGTCGTGGATTTGGACCCTGT
ATTTAAGAAGAATGTGGCAGTTGTCAAAGGAGCGGGTCATGCTGTGAGTC
TCCACCCGTGCGGGGATCATCTGTTTTTGGAGTTTGCCATTGACGGATTG
GTAAGGAACCTGTCGGTTTGTGAATAG

Coding sequence (CDS) from alignment at tig00000061_pilon:600508..601884+

>Ggra4661.t1 ID=Ggra4661.t1|Name=Ggra4661.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1377bp|location=Sequence derived from alignment at tig00000061_pilon:600508..601884+ (Gracilaria gracilis GNS1m male)
ATGGTGCCCTCTTCGTTCTTGCTCCTCCTTCCTTTCCTTGTGCTTCCCTC
TTTGGTCTCCGCCGTGTTAGAGCCCATTCCCTGCCCACTTCATCTTTCCA
ATTCGACTTGCGGGAAGCTCTCTGTGCCCCTCGACCATGCCAATCCTGCT
GATTCTGTCAACATATCCATTCTTTACGCCATAACATATCCTTCCATCCA
AACAAACTCTAGCAGTGCGTTTGTTTTCATTCAAGGAGGTCCTGGTCTCA
GCGTCTTGGAACATCGGACAGAGGGACTTGCATCTCTGGAGCTCGTGAAT
GCCATGAAACGCCCCGTGATCTTGTTTGATCAACGTGGCACTGGAAACGC
TTCTCTCCTCAATTGTTCGCTGCAGCTCTCATTTGACCTTGACCTTCTCG
ATACTCAGAGATGTCTCTCGCAGATTGGAGATGACGTTCTCCACTACTCC
GTGACTGCCATTGTGAATGATCTGGAAACGCTCCGGAAGGCCCTCGGTTT
TGAACAGCTGGATCTATTTGGCATATCATACggtactctcatatcacaag
cttatggcgtactgtatcccgacagcgttcgctcCATTCTGCTTGATTCA
CCTGTTCCTATGCGGTACAAAGACATTTATCAAGTGCGTCACCATTCCGC
ATATGCTCGAATTCACGCGGAGAAGAACAAATACAATCCAAACTTTTCTC
CAGCGGAGTTCAATGACCAGATGAAGACTGTTCTCCGCCGTCTACGTTGG
AACAGAGCTTTGCGAGAGGATCTGAGGATGAACCCGAGACAGTTGTTCCA
GATGTACCGATTCACATTCGATTCTTTGGCTGATGCGGTTTCCATGGCTG
CAGATAAAAAGAACTACACCGCCTTGACGGAAATTGCGAAATACATGGAG
CCTTCGAGCACACCTCTGCGTAGTTTCTCCGTCGCAATGGCCGTTTCCAC
CCTCTGCAACAGCATAGTGGATCTGGTTCCATGGGATGTGGACGCACCGT
TGCTCGAAAGGCTTGGAACGCTTGTGTACGATGTGCTTCATAGAGTGGGG
CTTCGAGACTTCTCTCCATTCTACATGACAGAAGGATTCGAGTCAATGGC
AAAGCACTGTCCCGCAATGCCTTTCCGTCAATTAAGGAGGGAAGGGCTCC
CTCTCGACAAGGGACCGCAGAAAGAAATTCCAACTCTGGTTCTTGTCGGC
GATCTGGATTCCTTAACCCCGATAGAAGACGTCGTGGATTTGGACCCTGT
ATTTAAGAAGAATGTGGCAGTTGTCAAAGGAGCGGGTCATGCTGTGAGTC
TCCACCCGTGCGGGGATCATCTGTTTTTGGAGTTTGCCATTGACGGATTG
GTAAGGAACCTGTCGGTTTGTGAATAG