Ggra3501.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3501.t1
Unique NameGgra3501.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:556214..556615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000023757
Max annot lvl121069|Pythiales
Evalue5.16e-05
EggNOG OGs2C41T@1|root,2S5JD@2759|Eukaryota,1MH2R@121069|Pythiales
DescriptionSource PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3501Ggra3501Gracilaria gracilis GNS1m malegenetig00000059_pilon 556214..556615 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3501.t1.stop1Ggra3501.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 556214..556216 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3501.t1.CDS1Ggra3501.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 556214..556615 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3501.t1.exon1Ggra3501.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 556214..556615 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3501.t1.start1Ggra3501.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 556613..556615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3501.t1Ggra3501.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 556214..556615 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3501.t1 ID=Ggra3501.t1|Name=Ggra3501.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=134bp
MSFSAREELFGDRKPNASDYGSVNEAALSAEQRLEQQRHSLVVQDESLQG
LSTGVESVRRIAGLMHNEVNSQNVMLDEISHGMERVSSRVVRADRGTEGL
SVSPYNFRSFCLLLWPLVLLIILLFEAVIHFIF*
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spliced messenger RNA

>Ggra3501.t1 ID=Ggra3501.t1|Name=Ggra3501.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000059_pilon:556214..556615- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTTTCAGCTCGCGAAGAACTATTTGGTGACCGAAAACCTAACGC
ATCTGATTATGGCAGTGTGAATGAAGCAGCTCTTTCTGCAGAACAAAGAT
TGGAACAACAACGACATTCACTTGTAGTACAAGATGAATCCCTCCAAGGT
CTTTCTACAGGGGTAGAATCCGTCAGAAGAATAGCTGGATTGATGCATAA
TGAGGTCAACTCACAGAATGTTATGCTTGACGAGATCTCTCATGGCATGG
AAAGAGTGTCTAGTCGCGTCGTCAGAGCAGATCGTGGAACTGAAGGACTT
TCTGTCTCGCCGTACAACTTTCGTTCCTTTTGCCTCCTATTATGGCCACT
TGTACTTCTTATCATACTTCTGTTCGAAGCAGTTATTCATTTCATATTTT
GA
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protein sequence of Ggra3501.t1

>Ggra3501.t1 ID=Ggra3501.t1|Name=Ggra3501.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=134bp
MSFSAREELFGDRKPNASDYGSVNEAALSAEQRLEQQRHSLVVQDESLQG
LSTGVESVRRIAGLMHNEVNSQNVMLDEISHGMERVSSRVVRADRGTEGL
SVSPYNFRSFCLLLWPLVLLIILLFEAVIHFIF*
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mRNA from alignment at tig00000059_pilon:556214..556615-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3501.t1 ID=Ggra3501.t1|Name=Ggra3501.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000059_pilon:556214..556615- (Gracilaria gracilis GNS1m male)
ATGTCCTTTTCAGCTCGCGAAGAACTATTTGGTGACCGAAAACCTAACGC
ATCTGATTATGGCAGTGTGAATGAAGCAGCTCTTTCTGCAGAACAAAGAT
TGGAACAACAACGACATTCACTTGTAGTACAAGATGAATCCCTCCAAGGT
CTTTCTACAGGGGTAGAATCCGTCAGAAGAATAGCTGGATTGATGCATAA
TGAGGTCAACTCACAGAATGTTATGCTTGACGAGATCTCTCATGGCATGG
AAAGAGTGTCTAGTCGCGTCGTCAGAGCAGATCGTGGAACTGAAGGACTT
TCTGTCTCGCCGTACAACTTTCGTTCCTTTTGCCTCCTATTATGGCCACT
TGTACTTCTTATCATACTTCTGTTCGAAGCAGTTATTCATTTCATATTTT
GA
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Coding sequence (CDS) from alignment at tig00000059_pilon:556214..556615-

>Ggra3501.t1 ID=Ggra3501.t1|Name=Ggra3501.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=402bp|location=Sequence derived from alignment at tig00000059_pilon:556214..556615- (Gracilaria gracilis GNS1m male)
ATGTCCTTTTCAGCTCGCGAAGAACTATTTGGTGACCGAAAACCTAACGC
ATCTGATTATGGCAGTGTGAATGAAGCAGCTCTTTCTGCAGAACAAAGAT
TGGAACAACAACGACATTCACTTGTAGTACAAGATGAATCCCTCCAAGGT
CTTTCTACAGGGGTAGAATCCGTCAGAAGAATAGCTGGATTGATGCATAA
TGAGGTCAACTCACAGAATGTTATGCTTGACGAGATCTCTCATGGCATGG
AAAGAGTGTCTAGTCGCGTCGTCAGAGCAGATCGTGGAACTGAAGGACTT
TCTGTCTCGCCGTACAACTTTCGTTCCTTTTGCCTCCTATTATGGCCACT
TGTACTTCTTATCATACTTCTGTTCGAAGCAGTTATTCATTTCATATTTT
GA
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