Ggra3484.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3484.t1
Unique Name	Ggra3484.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	548

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:332398..334041 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3484	Ggra3484	Gracilaria gracilis GNS1m male	gene	tig00000059_pilon 332398..334041 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3484.t1.start1	Ggra3484.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000059_pilon 332398..332400 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3484.t1.CDS1	Ggra3484.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000059_pilon 332398..334041 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3484.t1.exon1	Ggra3484.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000059_pilon 332398..334041 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3484.t1.stop1	Ggra3484.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000059_pilon 334039..334041 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3484.t1	Ggra3484.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000059_pilon 332398..334041 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000059_pilon:332398..334041+
coding sequence from alignment at tig00000059_pilon:332398..334041+

mRNA sequence

>Ggra3484.t1 ID=Ggra3484.t1|Name=Ggra3484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=548bp
MESGFRISNALANVFKFLAIEVLLALIIEPAIQVINQMRAQHLAISGKSV
QIRTSFLRRDFSGPAVGAKGWLWKATVFLTTLAALLATEFAFDYSTKTVP
SKNTLMLTGLLNTSIEPRGIWEYGEPLFDLVKCSYTNEGFVYERRVTPDG
ECYQKDGLGFRFKEPCALNPTMAHEFGCFTDGDKIVKSCQYGASCPYHGT
SPYDVVGNEFLKNATFVFPGAYEKNDALYIGKRDRNGQPVRYCASNSGQT
NNGRSTACPKNICLSFPKESDTVVISAFVSTQLEGRSASQSVFRNVSAYP
YFHEGPVVRIGSHTFHHAGCADCMKRISFMLGLVASSLCMEQNFDTITTS
ADDVGIAVAMLALGIPGEVGRYVDHRLDEQVGVLIVKWAWLTPLAVIIVL
SLVMGISALFTKSVVKIPLEYASAMFYARQRQLHDKSPKQVQRKNRYNIG
LVSTCEKDTLYLSMHADHNTVKYSGQRIGETNESCGKDDCERCGLGAVVC
DSDIRGSEVEEKSSGFATVGTNGTANTKGAQNLRRIRSRGRDEARGG*

spliced messenger RNA

>Ggra3484.t1 ID=Ggra3484.t1|Name=Ggra3484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000059_pilon:332398..334041+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCTGGGTTTCGAATTTCGAATGCACTTGCAAACGTCTTCAAGTT
TCTTGCAATTGAGGTACTGTTAGCCTTGATTATTGAACCAGCTATACAGG
TAATAAACCAAATGAGGGCACAACATCTTGCTATCTCGGGCAAATCCGTT
CAAATTCGAACTTCCTTTCTCCGACGCGACTTTTCTGGACCAGCCGTAGG
TGCGAAGGGTTGGCTCTGGAAAGCAACCGTTTTTCTTACAACACTTGCCG
CTCTGCTTGCAACCGAGTTTGCTTTTGACTACTCAACCAAAACAGTGCCT
TCAAAGAACACCCTTATGCTCACTGGACTACTGAATACATCCATAGAACC
CCGGGGAATCTGGGAATACGGTGAGCCTTTGTTCGACTTGGTCAAATGCT
CATACACCAATGAAGGCTTCGTATATGAGAGAAGAGTAACTCCAGACGGA
GAATGTTACCAAAAAGACGGCCTAGGATTCCGTTTCAAAGAACCATGTGC
CTTGAATCCTACAATGGCCCATGAATTTGGGTGCTTTACCGATGGAGATA
AGATAGTCAAATCATGTCAGTATGGAGCGTCATGTCCTTATCATGGAACG
TCACCGTATGACGTTGTTGGAAACGAGTTTCTCAAGAACGCCACATTTGT
TTTCCCTGGCGCGTATGAGAAAAACGACGCTCTGTACATTGGAAAGCGGG
ATCGCAACGGACAACCCGTTCGGTACTGCGCAAGCAACTCTGGGCAAACA
AATAATGGGCGGTCTACAGCATGTCCAAAGAACATTTGTCTCTCATTTCC
GAAAGAATCCGATACTGTCGTAATCAGTGCGTTCGTCAGCACGCAGCTGG
AGGGAAGGAGTGCAAGCCAATCCGTTTTCAGAAATGTTTCAGCGTATCCA
TATTTTCATGAAGGTCCAGTGGTTAGAATCGGTTCCCATACTTTCCATCA
CGCGGGCTGCGCCGACTGCATGAAAAGAATCTCTTTCATGCTTGGTCTTG
TAGCATCGTCATTGTGTATGGAGCAGAACTTCGACACCATTACAACATCT
GCTGACGATGTCGGAATTGCAGTGGCAATGCTGGCTCTTGGCATACCTGG
AGAGGTCGGAAGATATGTGGATCATCGACTCGATGAACAGGTGGGAGTGT
TGATCGTTAAATGGGCGTGGCTCACACCGCTGGCAGTCATTATTGTATTG
TCGCTGGTTATGGGAATATCGGCTTTGTTTACAAAAAGCGTGGTGAAAAT
ACCTTTAGAATATGCATCAGCAATGTTTTATGCTCGACAACGGCAACTAC
ACGATAAGAGTCCAAAGCAAGTGCAACGGAAGAACAGATATAATATTGGG
CTCGTAAGCACATGCGAGAAGGATACGCTGTACCTGTCAATGCACGCTGA
TCATAATACCGTGAAGTATAGTGGGCAGCGAATCGGGGAAACAAACGAGA
GTTGTGGGAAAGACGATTGCGAAAGGTGTGGGCTGGGCGCTGTCGTCTGC
GACAGTGATATACGAGGCAGTGAAGTGGAAGAGAAATCCAGTGGGTTCGC
TACTGTTGGTACCAACGGTACCGCGAACACGAAAGGTGCGCAAAATTTGC
GCAGAATTCGCTCGCGAGGACGGGACGAGGCGAGGGGAGGATAG

protein sequence of Ggra3484.t1

>Ggra3484.t1 ID=Ggra3484.t1|Name=Ggra3484.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=548bp
MESGFRISNALANVFKFLAIEVLLALIIEPAIQVINQMRAQHLAISGKSV
QIRTSFLRRDFSGPAVGAKGWLWKATVFLTTLAALLATEFAFDYSTKTVP
SKNTLMLTGLLNTSIEPRGIWEYGEPLFDLVKCSYTNEGFVYERRVTPDG
ECYQKDGLGFRFKEPCALNPTMAHEFGCFTDGDKIVKSCQYGASCPYHGT
SPYDVVGNEFLKNATFVFPGAYEKNDALYIGKRDRNGQPVRYCASNSGQT
NNGRSTACPKNICLSFPKESDTVVISAFVSTQLEGRSASQSVFRNVSAYP
YFHEGPVVRIGSHTFHHAGCADCMKRISFMLGLVASSLCMEQNFDTITTS
ADDVGIAVAMLALGIPGEVGRYVDHRLDEQVGVLIVKWAWLTPLAVIIVL
SLVMGISALFTKSVVKIPLEYASAMFYARQRQLHDKSPKQVQRKNRYNIG
LVSTCEKDTLYLSMHADHNTVKYSGQRIGETNESCGKDDCERCGLGAVVC
DSDIRGSEVEEKSSGFATVGTNGTANTKGAQNLRRIRSRGRDEARGG*

mRNA from alignment at tig00000059_pilon:332398..334041+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3484.t1 ID=Ggra3484.t1|Name=Ggra3484.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000059_pilon:332398..334041+ (Gracilaria gracilis GNS1m male)
ATGGAGTCTGGGTTTCGAATTTCGAATGCACTTGCAAACGTCTTCAAGTT
TCTTGCAATTGAGGTACTGTTAGCCTTGATTATTGAACCAGCTATACAGG
TAATAAACCAAATGAGGGCACAACATCTTGCTATCTCGGGCAAATCCGTT
CAAATTCGAACTTCCTTTCTCCGACGCGACTTTTCTGGACCAGCCGTAGG
TGCGAAGGGTTGGCTCTGGAAAGCAACCGTTTTTCTTACAACACTTGCCG
CTCTGCTTGCAACCGAGTTTGCTTTTGACTACTCAACCAAAACAGTGCCT
TCAAAGAACACCCTTATGCTCACTGGACTACTGAATACATCCATAGAACC
CCGGGGAATCTGGGAATACGGTGAGCCTTTGTTCGACTTGGTCAAATGCT
CATACACCAATGAAGGCTTCGTATATGAGAGAAGAGTAACTCCAGACGGA
GAATGTTACCAAAAAGACGGCCTAGGATTCCGTTTCAAAGAACCATGTGC
CTTGAATCCTACAATGGCCCATGAATTTGGGTGCTTTACCGATGGAGATA
AGATAGTCAAATCATGTCAGTATGGAGCGTCATGTCCTTATCATGGAACG
TCACCGTATGACGTTGTTGGAAACGAGTTTCTCAAGAACGCCACATTTGT
TTTCCCTGGCGCGTATGAGAAAAACGACGCTCTGTACATTGGAAAGCGGG
ATCGCAACGGACAACCCGTTCGGTACTGCGCAAGCAACTCTGGGCAAACA
AATAATGGGCGGTCTACAGCATGTCCAAAGAACATTTGTCTCTCATTTCC
GAAAGAATCCGATACTGTCGTAATCAGTGCGTTCGTCAGCACGCAGCTGG
AGGGAAGGAGTGCAAGCCAATCCGTTTTCAGAAATGTTTCAGCGTATCCA
TATTTTCATGAAGGTCCAGTGGTTAGAATCGGTTCCCATACTTTCCATCA
CGCGGGCTGCGCCGACTGCATGAAAAGAATCTCTTTCATGCTTGGTCTTG
TAGCATCGTCATTGTGTATGGAGCAGAACTTCGACACCATTACAACATCT
GCTGACGATGTCGGAATTGCAGTGGCAATGCTGGCTCTTGGCATACCTGG
AGAGGTCGGAAGATATGTGGATCATCGACTCGATGAACAGGTGGGAGTGT
TGATCGTTAAATGGGCGTGGCTCACACCGCTGGCAGTCATTATTGTATTG
TCGCTGGTTATGGGAATATCGGCTTTGTTTACAAAAAGCGTGGTGAAAAT
ACCTTTAGAATATGCATCAGCAATGTTTTATGCTCGACAACGGCAACTAC
ACGATAAGAGTCCAAAGCAAGTGCAACGGAAGAACAGATATAATATTGGG
CTCGTAAGCACATGCGAGAAGGATACGCTGTACCTGTCAATGCACGCTGA
TCATAATACCGTGAAGTATAGTGGGCAGCGAATCGGGGAAACAAACGAGA
GTTGTGGGAAAGACGATTGCGAAAGGTGTGGGCTGGGCGCTGTCGTCTGC
GACAGTGATATACGAGGCAGTGAAGTGGAAGAGAAATCCAGTGGGTTCGC
TACTGTTGGTACCAACGGTACCGCGAACACGAAAGGTGCGCAAAATTTGC
GCAGAATTCGCTCGCGAGGACGGGACGAGGCGAGGGGAGGATAG

Coding sequence (CDS) from alignment at tig00000059_pilon:332398..334041+

>Ggra3484.t1 ID=Ggra3484.t1|Name=Ggra3484.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1644bp|location=Sequence derived from alignment at tig00000059_pilon:332398..334041+ (Gracilaria gracilis GNS1m male)
ATGGAGTCTGGGTTTCGAATTTCGAATGCACTTGCAAACGTCTTCAAGTT
TCTTGCAATTGAGGTACTGTTAGCCTTGATTATTGAACCAGCTATACAGG
TAATAAACCAAATGAGGGCACAACATCTTGCTATCTCGGGCAAATCCGTT
CAAATTCGAACTTCCTTTCTCCGACGCGACTTTTCTGGACCAGCCGTAGG
TGCGAAGGGTTGGCTCTGGAAAGCAACCGTTTTTCTTACAACACTTGCCG
CTCTGCTTGCAACCGAGTTTGCTTTTGACTACTCAACCAAAACAGTGCCT
TCAAAGAACACCCTTATGCTCACTGGACTACTGAATACATCCATAGAACC
CCGGGGAATCTGGGAATACGGTGAGCCTTTGTTCGACTTGGTCAAATGCT
CATACACCAATGAAGGCTTCGTATATGAGAGAAGAGTAACTCCAGACGGA
GAATGTTACCAAAAAGACGGCCTAGGATTCCGTTTCAAAGAACCATGTGC
CTTGAATCCTACAATGGCCCATGAATTTGGGTGCTTTACCGATGGAGATA
AGATAGTCAAATCATGTCAGTATGGAGCGTCATGTCCTTATCATGGAACG
TCACCGTATGACGTTGTTGGAAACGAGTTTCTCAAGAACGCCACATTTGT
TTTCCCTGGCGCGTATGAGAAAAACGACGCTCTGTACATTGGAAAGCGGG
ATCGCAACGGACAACCCGTTCGGTACTGCGCAAGCAACTCTGGGCAAACA
AATAATGGGCGGTCTACAGCATGTCCAAAGAACATTTGTCTCTCATTTCC
GAAAGAATCCGATACTGTCGTAATCAGTGCGTTCGTCAGCACGCAGCTGG
AGGGAAGGAGTGCAAGCCAATCCGTTTTCAGAAATGTTTCAGCGTATCCA
TATTTTCATGAAGGTCCAGTGGTTAGAATCGGTTCCCATACTTTCCATCA
CGCGGGCTGCGCCGACTGCATGAAAAGAATCTCTTTCATGCTTGGTCTTG
TAGCATCGTCATTGTGTATGGAGCAGAACTTCGACACCATTACAACATCT
GCTGACGATGTCGGAATTGCAGTGGCAATGCTGGCTCTTGGCATACCTGG
AGAGGTCGGAAGATATGTGGATCATCGACTCGATGAACAGGTGGGAGTGT
TGATCGTTAAATGGGCGTGGCTCACACCGCTGGCAGTCATTATTGTATTG
TCGCTGGTTATGGGAATATCGGCTTTGTTTACAAAAAGCGTGGTGAAAAT
ACCTTTAGAATATGCATCAGCAATGTTTTATGCTCGACAACGGCAACTAC
ACGATAAGAGTCCAAAGCAAGTGCAACGGAAGAACAGATATAATATTGGG
CTCGTAAGCACATGCGAGAAGGATACGCTGTACCTGTCAATGCACGCTGA
TCATAATACCGTGAAGTATAGTGGGCAGCGAATCGGGGAAACAAACGAGA
GTTGTGGGAAAGACGATTGCGAAAGGTGTGGGCTGGGCGCTGTCGTCTGC
GACAGTGATATACGAGGCAGTGAAGTGGAAGAGAAATCCAGTGGGTTCGC
TACTGTTGGTACCAACGGTACCGCGAACACGAAAGGTGCGCAAAATTTGC
GCAGAATTCGCTCGCGAGGACGGGACGAGGCGAGGGGAGGATAG