Ggra6836.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6836.t1
Unique NameGgra6836.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:639358..639856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3711.Bra036160.1-P
PFAMsCyt-b5
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0012505,GO:0016020,GO:0031984,GO:0042175,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0098542,GO:0098827
Evalue8.33e-34
EggNOG OGsCOG5274@1|root,KOG0537@2759|Eukaryota,37UZ2@33090|Viridiplantae,3GISV@35493|Streptophyta,3HZZB@3699|Brassicales
DescriptionCytochrome b5
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6836Ggra6836Gracilaria gracilis GNS1m malegenetig00000056_pilon 639358..639856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6836.t1Ggra6836.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 639358..639856 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6836.t1.stop1Ggra6836.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 639358..639360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6836.t1.CDS1Ggra6836.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 639358..639726 -
Ggra6836.t1.CDS2Ggra6836.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 639824..639856 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6836.t1.exon1Ggra6836.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 639358..639726 -
Ggra6836.t1.exon2Ggra6836.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 639824..639856 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6836.t1.intron1Ggra6836.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 639727..639823 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6836.t1.start1Ggra6836.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 639854..639856 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6836.t1 ID=Ggra6836.t1|Name=Ggra6836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=134bp
MPGSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSS
GRDSTREFEDVGHSSDARAQLAELHIGDLRDPTPEEIELAEQEKRERGES
DEAQKGSVVAALAKWLLPLVLVGVAYILRQYAK*
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spliced messenger RNA

>Ggra6836.t1 ID=Ggra6836.t1|Name=Ggra6836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=402bp|location=Sequence derived from alignment at tig00000056_pilon:639358..639856- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGGTTCCAAAGCTTATCCCATGGTGGAGGTGGCACGGCACACTTC
CAGCTCGTCATGCTGGATGGTGATCGACTCCAAAGTCTATGACGTCACAA
GCTTTCTTCTGGAGCACCCAGGCGGTGATGATATCCTTCTAGACTCCTCC
GGTCGCGACTCAACGCGAGAGTTTGAAGATGTTGGACATTCATCGGATGC
CCGCGCACAACTAGCCGAACTGCATATTGGAGATTTACGCGATCCAACAC
CGGAAGAAATTGAGCTGGCCGAGCAAGAGAAACGAGAAAGAGGAGAAAGT
GATGAAGCTCAAAAAGGTAGTGTTGTGGCTGCATTAGCAAAGTGGTTGCT
CCCTCTTGTCTTGGTTGGTGTTGCATATATTCTCCGTCAATATGCCAAGT
AA
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protein sequence of Ggra6836.t1

>Ggra6836.t1 ID=Ggra6836.t1|Name=Ggra6836.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=134bp
MPGSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSS
GRDSTREFEDVGHSSDARAQLAELHIGDLRDPTPEEIELAEQEKRERGES
DEAQKGSVVAALAKWLLPLVLVGVAYILRQYAK*
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mRNA from alignment at tig00000056_pilon:639358..639856-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6836.t1 ID=Ggra6836.t1|Name=Ggra6836.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=499bp|location=Sequence derived from alignment at tig00000056_pilon:639358..639856- (Gracilaria gracilis GNS1m male)
ATGCCGGGTTCCAAAGCTTATCCCATGGTGGAGGTACGTATCTGCCTTCA
AAGGGAACCTCAGAAACTTAACAATAGCGCTTCAAGAAATCTAATACAAA
CTTACAATACCTATCATTGCGCCTTCGTAGGTGGCACGGCACACTTCCAG
CTCGTCATGCTGGATGGTGATCGACTCCAAAGTCTATGACGTCACAAGCT
TTCTTCTGGAGCACCCAGGCGGTGATGATATCCTTCTAGACTCCTCCGGT
CGCGACTCAACGCGAGAGTTTGAAGATGTTGGACATTCATCGGATGCCCG
CGCACAACTAGCCGAACTGCATATTGGAGATTTACGCGATCCAACACCGG
AAGAAATTGAGCTGGCCGAGCAAGAGAAACGAGAAAGAGGAGAAAGTGAT
GAAGCTCAAAAAGGTAGTGTTGTGGCTGCATTAGCAAAGTGGTTGCTCCC
TCTTGTCTTGGTTGGTGTTGCATATATTCTCCGTCAATATGCCAAGTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:639358..639856-

>Ggra6836.t1 ID=Ggra6836.t1|Name=Ggra6836.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=402bp|location=Sequence derived from alignment at tig00000056_pilon:639358..639856- (Gracilaria gracilis GNS1m male)
ATGCCGGGTTCCAAAGCTTATCCCATGGTGGAGGTGGCACGGCACACTTC
CAGCTCGTCATGCTGGATGGTGATCGACTCCAAAGTCTATGACGTCACAA
GCTTTCTTCTGGAGCACCCAGGCGGTGATGATATCCTTCTAGACTCCTCC
GGTCGCGACTCAACGCGAGAGTTTGAAGATGTTGGACATTCATCGGATGC
CCGCGCACAACTAGCCGAACTGCATATTGGAGATTTACGCGATCCAACAC
CGGAAGAAATTGAGCTGGCCGAGCAAGAGAAACGAGAAAGAGGAGAAAGT
GATGAAGCTCAAAAAGGTAGTGTTGTGGCTGCATTAGCAAAGTGGTTGCT
CCCTCTTGTCTTGGTTGGTGTTGCATATATTCTCCGTCAATATGCCAAGT
AA
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