Ggra6717.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6717.t1
Unique NameGgra6717.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:281150..282075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_06913T0
Preferred namerpl8
PFAMsRibosomal_L7Ae
Max annot lvl4751|Fungi
KEGG koko:K02936
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000470,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.22e-100
EggNOG OGsCOG1358@1|root,KOG3166@2759|Eukaryota,38EEJ@33154|Opisthokonta,3NUET@4751|Fungi
Descriptionribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03009,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6717Ggra6717Gracilaria gracilis GNS1m malegenetig00000056_pilon 281150..282075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6717.t1Ggra6717.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 281150..282075 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6717.t1.stop1Ggra6717.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 281150..281152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6717.t1.CDS1Ggra6717.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 281150..281950 -
Ggra6717.t1.CDS2Ggra6717.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 282073..282075 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6717.t1.exon1Ggra6717.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 281150..281950 -
Ggra6717.t1.exon2Ggra6717.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 282073..282075 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6717.t1.intron1Ggra6717.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 281951..282072 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6717.t1.start1Ggra6717.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 282073..282075 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6717.t1 ID=Ggra6717.t1|Name=Ggra6717.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=268bp
MGKSRGKGRTPAPPPLAAKQVVVKKPKNPLFEKRPKNFGIGQDVLPSRVN
LGRYVKWPKYVRLQRQRKILLVRLKVPPALNQFRLPMDASTTSSLFKLMS
KYKPETSIQKAQRLAELGEASEAGRDATRTKKPICLKFGINHVTELVEQK
KASLVVMAHDVDPIELIVWLPALCRKMDVPYCIIRSSARLGTAIHMKTAT
AVAFTQVRPEDKAELTKIIESCNSSFAERYEDVRKRWGGGIMGIKSNHKS
EKKRKALAAEEAKRIGT*
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spliced messenger RNA

>Ggra6717.t1 ID=Ggra6717.t1|Name=Ggra6717.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00000056_pilon:281150..282075- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAAGAGCAGGGGAAAAGGACGTACACCAGCGCCACCACCACTTGC
AGCCAAGCAGGTGGTGGTCAAGAAGCCGAAGAATCCTCTCTTTGAGAAAC
GCCCGAAGAACTTCGGTATTGGACAAGATGTGTTGCCAAGCCGCGTCAAT
TTGGGTCGATACGTCAAGTGGCCGAAGTATGTCCGACTTCAGCGCCAGCG
TAAGATTCTTTTGGTCCGCCTCAAGGTCCCGCCGGCATTGAACCAGTTCC
GTTTGCCAATGGACGCTTCAACCACTAGTTCGTTGTTCAAGCTCATGTCG
AAGTACAAGCCGGAGACCTCCATTCAGAAGGCGCAACGTTTGGCTGAACT
CGGTGAAGCTAGCGAAGCCGGCCGTGATGCCACTCGCACGAAGAAGCCGA
TCTGTTTGAAGTTTGGTATCAACCATGTCACTGAACTTGTTGAGCAGAAG
AAGGCCTCTCTTGTTGTGATGGCTCATGATGTTGATCCTATTGAACTCAT
TGTGTGGCTTCCGGCCCTTTGTCGCAAAATGGATGTCCCATACTGCATCA
TTCGTAGCTCTGCTCGTTTGGGAACTGCGATTCACATGAAGACTGCTACC
GCTGTTGCCTTCACTCAGGTTCGTCCTGAAGACAAGGCAGAGCTCACTAA
GATCATTGAAAGTTGTAACTCAAGCTTTGCTGAGCGTTATGAGGACGTGC
GCAAGAGATGGGGCGGTGGTATTATGGGCATCAAGTCCAACCACAAGTCC
GAAAAGAAGAGGAAAGCTTTGGCTGCTGAAGAGGCCAAACGCATCGGGAC
ATAA
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protein sequence of Ggra6717.t1

>Ggra6717.t1 ID=Ggra6717.t1|Name=Ggra6717.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=268bp
MGKSRGKGRTPAPPPLAAKQVVVKKPKNPLFEKRPKNFGIGQDVLPSRVN
LGRYVKWPKYVRLQRQRKILLVRLKVPPALNQFRLPMDASTTSSLFKLMS
KYKPETSIQKAQRLAELGEASEAGRDATRTKKPICLKFGINHVTELVEQK
KASLVVMAHDVDPIELIVWLPALCRKMDVPYCIIRSSARLGTAIHMKTAT
AVAFTQVRPEDKAELTKIIESCNSSFAERYEDVRKRWGGGIMGIKSNHKS
EKKRKALAAEEAKRIGT*
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mRNA from alignment at tig00000056_pilon:281150..282075-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6717.t1 ID=Ggra6717.t1|Name=Ggra6717.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=926bp|location=Sequence derived from alignment at tig00000056_pilon:281150..282075- (Gracilaria gracilis GNS1m male)
ATGGTAAGTCCATTGCAAGTCGCAGATCCTGTATCCGATGATAAGAATTC
CTCGGGCGAACCGTTTGCCAATCTACGCGAACCGTTTATCTGACCGATGT
GCCTGCTATTCTATCAATACCACAGGGTAAGAGCAGGGGAAAAGGACGTA
CACCAGCGCCACCACCACTTGCAGCCAAGCAGGTGGTGGTCAAGAAGCCG
AAGAATCCTCTCTTTGAGAAACGCCCGAAGAACTTCGGTATTGGACAAGA
TGTGTTGCCAAGCCGCGTCAATTTGGGTCGATACGTCAAGTGGCCGAAGT
ATGTCCGACTTCAGCGCCAGCGTAAGATTCTTTTGGTCCGCCTCAAGGTC
CCGCCGGCATTGAACCAGTTCCGTTTGCCAATGGACGCTTCAACCACTAG
TTCGTTGTTCAAGCTCATGTCGAAGTACAAGCCGGAGACCTCCATTCAGA
AGGCGCAACGTTTGGCTGAACTCGGTGAAGCTAGCGAAGCCGGCCGTGAT
GCCACTCGCACGAAGAAGCCGATCTGTTTGAAGTTTGGTATCAACCATGT
CACTGAACTTGTTGAGCAGAAGAAGGCCTCTCTTGTTGTGATGGCTCATG
ATGTTGATCCTATTGAACTCATTGTGTGGCTTCCGGCCCTTTGTCGCAAA
ATGGATGTCCCATACTGCATCATTCGTAGCTCTGCTCGTTTGGGAACTGC
GATTCACATGAAGACTGCTACCGCTGTTGCCTTCACTCAGGTTCGTCCTG
AAGACAAGGCAGAGCTCACTAAGATCATTGAAAGTTGTAACTCAAGCTTT
GCTGAGCGTTATGAGGACGTGCGCAAGAGATGGGGCGGTGGTATTATGGG
CATCAAGTCCAACCACAAGTCCGAAAAGAAGAGGAAAGCTTTGGCTGCTG
AAGAGGCCAAACGCATCGGGACATAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:281150..282075-

>Ggra6717.t1 ID=Ggra6717.t1|Name=Ggra6717.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00000056_pilon:281150..282075- (Gracilaria gracilis GNS1m male)
ATGGGTAAGAGCAGGGGAAAAGGACGTACACCAGCGCCACCACCACTTGC
AGCCAAGCAGGTGGTGGTCAAGAAGCCGAAGAATCCTCTCTTTGAGAAAC
GCCCGAAGAACTTCGGTATTGGACAAGATGTGTTGCCAAGCCGCGTCAAT
TTGGGTCGATACGTCAAGTGGCCGAAGTATGTCCGACTTCAGCGCCAGCG
TAAGATTCTTTTGGTCCGCCTCAAGGTCCCGCCGGCATTGAACCAGTTCC
GTTTGCCAATGGACGCTTCAACCACTAGTTCGTTGTTCAAGCTCATGTCG
AAGTACAAGCCGGAGACCTCCATTCAGAAGGCGCAACGTTTGGCTGAACT
CGGTGAAGCTAGCGAAGCCGGCCGTGATGCCACTCGCACGAAGAAGCCGA
TCTGTTTGAAGTTTGGTATCAACCATGTCACTGAACTTGTTGAGCAGAAG
AAGGCCTCTCTTGTTGTGATGGCTCATGATGTTGATCCTATTGAACTCAT
TGTGTGGCTTCCGGCCCTTTGTCGCAAAATGGATGTCCCATACTGCATCA
TTCGTAGCTCTGCTCGTTTGGGAACTGCGATTCACATGAAGACTGCTACC
GCTGTTGCCTTCACTCAGGTTCGTCCTGAAGACAAGGCAGAGCTCACTAA
GATCATTGAAAGTTGTAACTCAAGCTTTGCTGAGCGTTATGAGGACGTGC
GCAAGAGATGGGGCGGTGGTATTATGGGCATCAAGTCCAACCACAAGTCC
GAAAAGAAGAGGAAAGCTTTGGCTGCTGAAGAGGCCAAACGCATCGGGAC
ATAA
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