Ggra6671.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6671.t1
Unique Name	Ggra6671.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	387

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:154349..155509 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003289398.1
PFAMs	Dynamitin
Max annot lvl	554915\|Amoebozoa
KEGG ko	ko:K10424
KEGG Pathway	ko04962,ko05016,map04962,map05016
GOs	GO:0000226,GO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005869,GO:0005875,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009987,GO:0015629,GO:0015630,GO:0016043,GO:0022402,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0071840,GO:1902850,GO:1903047
Evalue	2.79e-07
EggNOG OGs	KOG3958@1\|root,KOG3958@2759\|Eukaryota,3XFPD@554915\|Amoebozoa
Description	Dynamitin
COG category	Z
BRITE	ko00000,ko00001,ko03036,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6671	Ggra6671	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 154349..155509 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6671.t1.stop1	Ggra6671.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 154349..154351 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6671.t1.CDS1	Ggra6671.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 154349..155509 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6671.t1.exon1	Ggra6671.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 154349..155509 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6671.t1.start1	Ggra6671.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 155507..155509 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6671.t1	Ggra6671.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 154349..155509 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:154349..155509-
coding sequence from alignment at tig00000056_pilon:154349..155509-

mRNA sequence

>Ggra6671.t1 ID=Ggra6671.t1|Name=Ggra6671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp
MEWVYAPQSDEPLVYEADPLPEESPPSRQPLDIFSTSFAVEQPLPSEHDE
QEYYGDEDIVEERVSPLKAFEMFAGSVLPIANAADFSDSIYLESSHVPSR
HITFGTARPRLPASESRSDKLKRLRTEVESLAADCTSDDQQPPESSLPDL
TVLRTRLQQIEHNLNAELRPNRTIRVTPNNSLSLSDADHSGPHAKQPVTV
QMISPNVAVLQSLEKRVTAMENALGIHRLDEHCETIPLAPLLEDVRTRLG
LITDDTLPQRLKKDAEDIARILQSELRDEKGTEIVRMASVLHKIEKWQAV
AESLPIVVQRLRCLKQVQDDAAQFMECMSVLDKQVDVLQKRNETNNSLVE
KVRRNLETNIGTVQKNIDVLNSKISMVAVNEEVGQS*

spliced messenger RNA

>Ggra6671.t1 ID=Ggra6671.t1|Name=Ggra6671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000056_pilon:154349..155509- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATGGGTGTACGCACCGCAATCGGACGAACCGCTCGTGTATGAGGC
TGACCCGCTTCCAGAAGAGTCGCCGCCATCCCGCCAACCACTTGATATAT
TTTCCACGTCCTTCGCCGTCGAGCAGCCTCTTCCTTCGGAACATGATGAG
CAAGAATACTATGGAGATGAGGACATCGTGGAGGAGCGCGTTTCGCCTCT
CAAAGCGTTCGAAATGTTCGCCGGCAGCGTCCTTCCCATCGCCAATGCTG
CCGACTTCTCCGATTCAATTTACCTTGAGTCCAGTCATGTTCCTTCTAGG
CACATAACTTTCGGAACCGCTAGACCCCGATTACCCGCCTCCGAAAGTCG
ATCCGACAAGTTGAAACGACTGCGCACAGAAGTGGAATCACTGGCCGCTG
ATTGTACGTCAGATGATCAACAACCGCCTGAATCCAGTCTGCCAGATTTG
ACTGTGTTAAGAACCAGACTGCAACAAATAGAGCACAATCTCAACGCTGA
ATTGCGACCAAACCGCACCATACGAGTTACACCCAACAACAGTCTGTCAC
TGTCAGATGCCGATCATTCCGGCCCTCATGCGAAGCAACCAGTTACCGTG
CAGATGATTTCTCCCAATGTCGCAGTACTGCAGTCGCTAGAAAAGCGGGT
AACAGCTATGGAGAATGCTCTTGGAATACATCGTCTTGATGAGCATTGTG
AAACAATTCCACTGGCGCCTTTACTTGAAGATGTACGTACTAGACTTGGT
CTCATCACGGACGATACTCTCCCACAACGACTGAAGAAGGACGCTGAAGA
CATTGCGCGTATATTGCAATCAGAGCTACGCGACGAGAAGGGAACGGAGA
TAGTACGCATGGCTAGTGTTTTACACAAGATTGAAAAATGGCAGGCTGTT
GCTGAAAGTCTGCCTATCGTCGTGCAGAGGCTTCGATGTTTGAAACAGGT
TCAGGATGATGCTGCGCAGTTCATGGAATGTATGAGTGTGCTTGACAAAC
AAGTTGATGTTTTACAGAAACGCAATGAAACCAATAATTCTCTTGTAGAG
AAGGTGCGACGCAACTTGGAAACGAACATTGGTACGGTTCAGAAAAACAT
TGATGTTCTCAACTCGAAGATTTCTATGGTAGCAGTTAACGAGGAAGTGG
GGCAGAGCTGA

protein sequence of Ggra6671.t1

>Ggra6671.t1 ID=Ggra6671.t1|Name=Ggra6671.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=387bp
MEWVYAPQSDEPLVYEADPLPEESPPSRQPLDIFSTSFAVEQPLPSEHDE
QEYYGDEDIVEERVSPLKAFEMFAGSVLPIANAADFSDSIYLESSHVPSR
HITFGTARPRLPASESRSDKLKRLRTEVESLAADCTSDDQQPPESSLPDL
TVLRTRLQQIEHNLNAELRPNRTIRVTPNNSLSLSDADHSGPHAKQPVTV
QMISPNVAVLQSLEKRVTAMENALGIHRLDEHCETIPLAPLLEDVRTRLG
LITDDTLPQRLKKDAEDIARILQSELRDEKGTEIVRMASVLHKIEKWQAV
AESLPIVVQRLRCLKQVQDDAAQFMECMSVLDKQVDVLQKRNETNNSLVE
KVRRNLETNIGTVQKNIDVLNSKISMVAVNEEVGQS*

mRNA from alignment at tig00000056_pilon:154349..155509-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6671.t1 ID=Ggra6671.t1|Name=Ggra6671.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000056_pilon:154349..155509- (Gracilaria gracilis GNS1m male)
ATGGAATGGGTGTACGCACCGCAATCGGACGAACCGCTCGTGTATGAGGC
TGACCCGCTTCCAGAAGAGTCGCCGCCATCCCGCCAACCACTTGATATAT
TTTCCACGTCCTTCGCCGTCGAGCAGCCTCTTCCTTCGGAACATGATGAG
CAAGAATACTATGGAGATGAGGACATCGTGGAGGAGCGCGTTTCGCCTCT
CAAAGCGTTCGAAATGTTCGCCGGCAGCGTCCTTCCCATCGCCAATGCTG
CCGACTTCTCCGATTCAATTTACCTTGAGTCCAGTCATGTTCCTTCTAGG
CACATAACTTTCGGAACCGCTAGACCCCGATTACCCGCCTCCGAAAGTCG
ATCCGACAAGTTGAAACGACTGCGCACAGAAGTGGAATCACTGGCCGCTG
ATTGTACGTCAGATGATCAACAACCGCCTGAATCCAGTCTGCCAGATTTG
ACTGTGTTAAGAACCAGACTGCAACAAATAGAGCACAATCTCAACGCTGA
ATTGCGACCAAACCGCACCATACGAGTTACACCCAACAACAGTCTGTCAC
TGTCAGATGCCGATCATTCCGGCCCTCATGCGAAGCAACCAGTTACCGTG
CAGATGATTTCTCCCAATGTCGCAGTACTGCAGTCGCTAGAAAAGCGGGT
AACAGCTATGGAGAATGCTCTTGGAATACATCGTCTTGATGAGCATTGTG
AAACAATTCCACTGGCGCCTTTACTTGAAGATGTACGTACTAGACTTGGT
CTCATCACGGACGATACTCTCCCACAACGACTGAAGAAGGACGCTGAAGA
CATTGCGCGTATATTGCAATCAGAGCTACGCGACGAGAAGGGAACGGAGA
TAGTACGCATGGCTAGTGTTTTACACAAGATTGAAAAATGGCAGGCTGTT
GCTGAAAGTCTGCCTATCGTCGTGCAGAGGCTTCGATGTTTGAAACAGGT
TCAGGATGATGCTGCGCAGTTCATGGAATGTATGAGTGTGCTTGACAAAC
AAGTTGATGTTTTACAGAAACGCAATGAAACCAATAATTCTCTTGTAGAG
AAGGTGCGACGCAACTTGGAAACGAACATTGGTACGGTTCAGAAAAACAT
TGATGTTCTCAACTCGAAGATTTCTATGGTAGCAGTTAACGAGGAAGTGG
GGCAGAGCTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:154349..155509-

>Ggra6671.t1 ID=Ggra6671.t1|Name=Ggra6671.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1161bp|location=Sequence derived from alignment at tig00000056_pilon:154349..155509- (Gracilaria gracilis GNS1m male)
ATGGAATGGGTGTACGCACCGCAATCGGACGAACCGCTCGTGTATGAGGC
TGACCCGCTTCCAGAAGAGTCGCCGCCATCCCGCCAACCACTTGATATAT
TTTCCACGTCCTTCGCCGTCGAGCAGCCTCTTCCTTCGGAACATGATGAG
CAAGAATACTATGGAGATGAGGACATCGTGGAGGAGCGCGTTTCGCCTCT
CAAAGCGTTCGAAATGTTCGCCGGCAGCGTCCTTCCCATCGCCAATGCTG
CCGACTTCTCCGATTCAATTTACCTTGAGTCCAGTCATGTTCCTTCTAGG
CACATAACTTTCGGAACCGCTAGACCCCGATTACCCGCCTCCGAAAGTCG
ATCCGACAAGTTGAAACGACTGCGCACAGAAGTGGAATCACTGGCCGCTG
ATTGTACGTCAGATGATCAACAACCGCCTGAATCCAGTCTGCCAGATTTG
ACTGTGTTAAGAACCAGACTGCAACAAATAGAGCACAATCTCAACGCTGA
ATTGCGACCAAACCGCACCATACGAGTTACACCCAACAACAGTCTGTCAC
TGTCAGATGCCGATCATTCCGGCCCTCATGCGAAGCAACCAGTTACCGTG
CAGATGATTTCTCCCAATGTCGCAGTACTGCAGTCGCTAGAAAAGCGGGT
AACAGCTATGGAGAATGCTCTTGGAATACATCGTCTTGATGAGCATTGTG
AAACAATTCCACTGGCGCCTTTACTTGAAGATGTACGTACTAGACTTGGT
CTCATCACGGACGATACTCTCCCACAACGACTGAAGAAGGACGCTGAAGA
CATTGCGCGTATATTGCAATCAGAGCTACGCGACGAGAAGGGAACGGAGA
TAGTACGCATGGCTAGTGTTTTACACAAGATTGAAAAATGGCAGGCTGTT
GCTGAAAGTCTGCCTATCGTCGTGCAGAGGCTTCGATGTTTGAAACAGGT
TCAGGATGATGCTGCGCAGTTCATGGAATGTATGAGTGTGCTTGACAAAC
AAGTTGATGTTTTACAGAAACGCAATGAAACCAATAATTCTCTTGTAGAG
AAGGTGCGACGCAACTTGGAAACGAACATTGGTACGGTTCAGAAAAACAT
TGATGTTCTCAACTCGAAGATTTCTATGGTAGCAGTTAACGAGGAAGTGG
GGCAGAGCTGA