Ggra6683.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6683.t1
Unique NameGgra6683.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length587
Homology
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BLAST of Ggra6683.t1 vs. uniprot
Match: A0A2V3ISK0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISK0_9FLOR)

HSP 1 Score: 487 bits (1254), Expect = 4.310e-164
Identity = 264/466 (56.65%), Postives = 327/466 (70.17%), Query Frame = 0 
Query:    5 THTKEKCSKVLLVLHPTAVVRPNFVISQVKWWFLVTVFITSITLVPGFLLARGVEDWNEIVDSVVITFGVRTLALLSKLIIDKLFDFINGGKKDYIVRGGNFFTKDNPLIQFLWERKILHKALEQGKKIGDNTHRMASHPKVWLLLIVLSYIVRLAPDMLGASLVAQNEPYRIVERIESITAPDLGFGDASGLQLRGNCVWARGGPDGKAVVAPSERRKADKRFGFIIWQYCVDVFREQEVDSEFRTLRGVDRNGKEVKAVFHIEVITEEVFTESWEPFSNETRAQAVFDSVISSAIECPNDTCMKNYRTEDMRIIYALLTKVGMHERSLRGDNDSLEKLRTSTGRVIARLPSTTRTSFVVLIVAVNVIFLAQSVSNSEEEVEHIALQRAISELKRPHGGSELTAIALPRGDASRSWGSKDGVQCYVVGDASCSAAQLLERVGDAVAVADEGGGAAGETRHGRRWV 470
            T+  + C K LL L+PT V +   +++Q+KWW  VT+FI  ITL+P F LARGV+ W+EI DS+VI  GVRT+ALLSKLII +LFDFIN G   Y VRG +FFT DNPL Q   ERKI  + L + K I +  H+MASHPKVWL LI+LSYIVRLAPD+LGASLV QNE  R   R   ITAPD GFG +  L  RGNCVW R GP      + S RR     FG+I+WQYCVD+FR+ +VDSE RTL G + NG  V+ VFHIEVITEEVFTESWEPFSN+ RAQ VF SV+S   +CP++ CM++YRT+DMRIIY LL KVGMHER L+GD  +LEKLR STG VI+RL  TTRT+F+VLI  VNVIFL QSVSN+EE  E + L RA+ +L++  G S  TAI L + D +R W +  GV C++V D   +  +++E   +  AV DE       TR+G+R+V
Sbjct:   55 TNNAQPC-KALLELNPTKVSKEEAILNQIKWWIAVTLFIVLITLLPAFFLARGVQHWDEIGDSIVIALGVRTVALLSKLIIKRLFDFINEGSLPYDVRGDSFFTDDNPLHQLFAERKI--RDLARRKNIRERPHQMASHPKVWLALILLSYIVRLAPDILGASLVVQNEEERRPVRQTVITAPDFGFGQSGKLIPRGNCVWTRAGPQ---FNSGSSRRN---HFGYIVWQYCVDLFRDDKVDSEVRTLVGKEANGTMVRGVFHIEVITEEVFTESWEPFSNKMRAQKVFQSVLSEENKCPDEACMRDYRTDDMRIIYRLLQKVGMHERDLKGDEKNLEKLRLSTGSVISRLDPTTRTAFIVLIATVNVIFLVQSVSNTEE-AEVVCLHRAVGQLQKLPGSSFDTAIVLAQPDLTRRWSTVRGVTCFLVADEKYTVLEIMESFSEVNAVLDEDRSFDSFTRNGKRFV 510
The following BLAST results are available for this feature:
BLAST of Ggra6683.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ISK04.310e-16456.65Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 558..586
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 564..586
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 171..586
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 146..170
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 86..145
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..85
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..55
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 56..66
NoneNo IPR availableTMHMMTMhelixcoord: 35..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:186409..189628 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6683.t1Ggra6683.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 186409..189628 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6683.t1 ID=Ggra6683.t1|Name=Ggra6683.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=587bp
MRSKTHTKEKCSKVLLVLHPTAVVRPNFVISQVKWWFLVTVFITSITLVP
GFLLARGVEDWNEIVDSVVITFGVRTLALLSKLIIDKLFDFINGGKKDYI
VRGGNFFTKDNPLIQFLWERKILHKALEQGKKIGDNTHRMASHPKVWLLL
IVLSYIVRLAPDMLGASLVAQNEPYRIVERIESITAPDLGFGDASGLQLR
GNCVWARGGPDGKAVVAPSERRKADKRFGFIIWQYCVDVFREQEVDSEFR
TLRGVDRNGKEVKAVFHIEVITEEVFTESWEPFSNETRAQAVFDSVISSA
IECPNDTCMKNYRTEDMRIIYALLTKVGMHERSLRGDNDSLEKLRTSTGR
VIARLPSTTRTSFVVLIVAVNVIFLAQSVSNSEEEVEHIALQRAISELKR
PHGGSELTAIALPRGDASRSWGSKDGVQCYVVGDASCSAAQLLERVGDAV
AVADEGGGAAGETRHGRRWVSNGLLLELATVAAAAAGGSDCADGRRQYCS
WNSGDSGSEYVAQVRNKMDARHSVSAANTDATTTPMDEMVLANALNMSAM
ISANTANENAYRNAESPRDAHCRHSRHSRDSAGDDT*
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