Ggra6665.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6665.t1
Unique NameGgra6665.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:64786..65481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6665Ggra6665Gracilaria gracilis GNS1m malegenetig00000056_pilon 64786..65481 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6665.t1.start1Ggra6665.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 64786..64788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6665.t1.CDS1Ggra6665.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 64786..65481 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6665.t1.exon1Ggra6665.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 64786..65481 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6665.t1.stop1Ggra6665.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 65479..65481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6665.t1Ggra6665.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 64786..65481 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6665.t1 ID=Ggra6665.t1|Name=Ggra6665.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=232bp
MTSVAIGNQASPTSVHALPQPVLHTKESKTIKENPSTSEISATQKVPDTI
ILGNTVAQRASQFGGLYSALAKSPVVPLTETGTSSLESSSKPSTLPDRSL
GTQNLKVNPPAVGPNSSVVPNKLGNIVQISKEYGELHIPSPTSPATPRAG
EVPPPNTGGESFGVRTLKKFKSLNSILSRRGSGEADNTPRRTMSGPGRLS
KGFRAFKESTVRGLKRLASAGRVRSRADENQ*
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spliced messenger RNA

>Ggra6665.t1 ID=Ggra6665.t1|Name=Ggra6665.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000056_pilon:64786..65481+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAGCGTTGCAATTGGAAACCAGGCTTCACCCACTTCAGTCCATGC
TTTGCCTCAACCCGTTCTCCACACGAAGGAGAGTAAAACGATTAAAGAAA
ACCCAAGTACTTCGGAAATCTCTGCAACCCAAAAAGTGCCCGACACTATC
ATACTCGGAAACACCGTTGCTCAGAGGGCCTCGCAATTCGGTGGTCTTTA
TAGTGCACTGGCTAAGTCACCAGTCGTACCGTTGACAGAAACTGGCACAT
CTTCTCTAGAAAGCTCTTCTAAACCGTCGACCCTCCCTGACAGGTCGCTG
GGAACGCAAAATCTGAAGGTGAACCCGCCGGCTGTTGGGCCAAACAGCTC
AGTGGTCCCCAACAAGCTCGGCAACATTGTACAGATATCAAAAGAATATG
GTGAATTGCACATACCATCGCCAACGTCACCAGCCACGCCCAGGGCAGGT
GAAGTGCCTCCTCCGAATACAGGGGGGGAAAGCTTTGGGGTTCGAACTTT
GAAGAAGTTTAAGTCGTTGAATTCCATTTTGAGTCGAAGAGGTTCTGGTG
AGGCCGATAACACACCCAGAAGAACAATGTCGGGCCCGGGGCGGCTCTCC
AAAGGATTCCGAGCGTTTAAAGAATCTACAGTTCGGGGCTTGAAGAGGCT
TGCTTCTGCGGGAAGAGTCAGAAGCAGAGCTGATGAAAACCAGTAG
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protein sequence of Ggra6665.t1

>Ggra6665.t1 ID=Ggra6665.t1|Name=Ggra6665.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=232bp
MTSVAIGNQASPTSVHALPQPVLHTKESKTIKENPSTSEISATQKVPDTI
ILGNTVAQRASQFGGLYSALAKSPVVPLTETGTSSLESSSKPSTLPDRSL
GTQNLKVNPPAVGPNSSVVPNKLGNIVQISKEYGELHIPSPTSPATPRAG
EVPPPNTGGESFGVRTLKKFKSLNSILSRRGSGEADNTPRRTMSGPGRLS
KGFRAFKESTVRGLKRLASAGRVRSRADENQ*
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mRNA from alignment at tig00000056_pilon:64786..65481+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6665.t1 ID=Ggra6665.t1|Name=Ggra6665.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000056_pilon:64786..65481+ (Gracilaria gracilis GNS1m male)
ATGACAAGCGTTGCAATTGGAAACCAGGCTTCACCCACTTCAGTCCATGC
TTTGCCTCAACCCGTTCTCCACACGAAGGAGAGTAAAACGATTAAAGAAA
ACCCAAGTACTTCGGAAATCTCTGCAACCCAAAAAGTGCCCGACACTATC
ATACTCGGAAACACCGTTGCTCAGAGGGCCTCGCAATTCGGTGGTCTTTA
TAGTGCACTGGCTAAGTCACCAGTCGTACCGTTGACAGAAACTGGCACAT
CTTCTCTAGAAAGCTCTTCTAAACCGTCGACCCTCCCTGACAGGTCGCTG
GGAACGCAAAATCTGAAGGTGAACCCGCCGGCTGTTGGGCCAAACAGCTC
AGTGGTCCCCAACAAGCTCGGCAACATTGTACAGATATCAAAAGAATATG
GTGAATTGCACATACCATCGCCAACGTCACCAGCCACGCCCAGGGCAGGT
GAAGTGCCTCCTCCGAATACAGGGGGGGAAAGCTTTGGGGTTCGAACTTT
GAAGAAGTTTAAGTCGTTGAATTCCATTTTGAGTCGAAGAGGTTCTGGTG
AGGCCGATAACACACCCAGAAGAACAATGTCGGGCCCGGGGCGGCTCTCC
AAAGGATTCCGAGCGTTTAAAGAATCTACAGTTCGGGGCTTGAAGAGGCT
TGCTTCTGCGGGAAGAGTCAGAAGCAGAGCTGATGAAAACCAGTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:64786..65481+

>Ggra6665.t1 ID=Ggra6665.t1|Name=Ggra6665.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=696bp|location=Sequence derived from alignment at tig00000056_pilon:64786..65481+ (Gracilaria gracilis GNS1m male)
ATGACAAGCGTTGCAATTGGAAACCAGGCTTCACCCACTTCAGTCCATGC
TTTGCCTCAACCCGTTCTCCACACGAAGGAGAGTAAAACGATTAAAGAAA
ACCCAAGTACTTCGGAAATCTCTGCAACCCAAAAAGTGCCCGACACTATC
ATACTCGGAAACACCGTTGCTCAGAGGGCCTCGCAATTCGGTGGTCTTTA
TAGTGCACTGGCTAAGTCACCAGTCGTACCGTTGACAGAAACTGGCACAT
CTTCTCTAGAAAGCTCTTCTAAACCGTCGACCCTCCCTGACAGGTCGCTG
GGAACGCAAAATCTGAAGGTGAACCCGCCGGCTGTTGGGCCAAACAGCTC
AGTGGTCCCCAACAAGCTCGGCAACATTGTACAGATATCAAAAGAATATG
GTGAATTGCACATACCATCGCCAACGTCACCAGCCACGCCCAGGGCAGGT
GAAGTGCCTCCTCCGAATACAGGGGGGGAAAGCTTTGGGGTTCGAACTTT
GAAGAAGTTTAAGTCGTTGAATTCCATTTTGAGTCGAAGAGGTTCTGGTG
AGGCCGATAACACACCCAGAAGAACAATGTCGGGCCCGGGGCGGCTCTCC
AAAGGATTCCGAGCGTTTAAAGAATCTACAGTTCGGGGCTTGAAGAGGCT
TGCTTCTGCGGGAAGAGTCAGAAGCAGAGCTGATGAAAACCAGTAG
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