Ggra6800.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6800.t1
Unique NameGgra6800.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:545436..545783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703521.1
Preferred nameRPL26
PFAMsKOW,Ribosomal_L26
Max annot lvl2759|Eukaryota
KEGG koko:K02898,ko:K18449,ko:K20068
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000075,GO:0000077,GO:0000184,GO:0000278,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009409,GO:0009411,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010212,GO:0010332,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010948,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022402,GO:0022613,GO:0022625,GO:0022626,GO:0023051,GO:0023052,GO:0023056,GO:0030330,GO:0030424,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031570,GO:0031571,GO:0031667,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034641,GO:0034644,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0042254,GO:0042273,GO:0042594,GO:0042770,GO:0042788,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043516,GO:0043517,GO:0043603,GO:0043604,GO:0043679,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044306,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045047,GO:0045184,GO:0045202,GO:0045727,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071156,GO:0071158,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071482,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090150,GO:0090304,GO:0097159,GO:0097458,GO:0098588,GO:0098793,GO:0098805,GO:0104004,GO:0120025,GO:0120038,GO:0150034,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902162,GO:1902164,GO:1902165,GO:1902167,GO:1902229,GO:1902231,GO:1902253,GO:1902255,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902533,GO:1902806,GO:1902807,GO:1903047,GO:1904803,GO:1990904,GO:1990928,GO:2000045,GO:2000112,GO:2000134,GO:2001020,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Evalue1.24e-47
EggNOG OGsCOG0198@1|root,KOG3401@2759|Eukaryota
Descriptionregulation of translation involved in cellular response to UV
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6800Ggra6800Gracilaria gracilis GNS1m malegenetig00000056_pilon 545436..545783 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6800.t1.stop1Ggra6800.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 545436..545438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6800.t1.CDS1Ggra6800.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 545436..545783 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6800.t1.exon1Ggra6800.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 545436..545783 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6800.t1.start1Ggra6800.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 545781..545783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6800.t1Ggra6800.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 545436..545783 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6800.t1 ID=Ggra6800.t1|Name=Ggra6800.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=116bp
MSAPLSAELRQKYNVRSLPIRKHDEVRVVRGQYKGEGKVLTCYRKKYVVH
IERITRERANQMPVPIGIHPSNCVITKIKMDKDRKAILDRKNREAKQEKG
KFSESDVNVPMADVD*
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spliced messenger RNA

>Ggra6800.t1 ID=Ggra6800.t1|Name=Ggra6800.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00000056_pilon:545436..545783- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCGCCGCTATCTGCTGAGCTCCGTCAGAAGTATAACGTGCGCTC
TCTTCCGATCCGAAAGCACGACGAGGTGCGCGTTGTTCGCGGCCAGTACA
AGGGTGAAGGAAAAGTTCTTACGTGCTACAGGAAGAAGTATGTCGTCCAT
ATTGAGCGTATCACTCGCGAGAGGGCCAACCAGATGCCGGTGCCTATTGG
TATTCATCCTAGCAACTGTGTTATCACTAAGATCAAGATGGATAAGGACA
GAAAGGCCATCCTCGACAGGAAGAACCGTGAGGCCAAGCAAGAGAAAGGC
AAGTTCTCCGAGTCTGATGTCAATGTGCCCATGGCCGACGTCGATTAG
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protein sequence of Ggra6800.t1

>Ggra6800.t1 ID=Ggra6800.t1|Name=Ggra6800.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=116bp
MSAPLSAELRQKYNVRSLPIRKHDEVRVVRGQYKGEGKVLTCYRKKYVVH
IERITRERANQMPVPIGIHPSNCVITKIKMDKDRKAILDRKNREAKQEKG
KFSESDVNVPMADVD*
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mRNA from alignment at tig00000056_pilon:545436..545783-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6800.t1 ID=Ggra6800.t1|Name=Ggra6800.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00000056_pilon:545436..545783- (Gracilaria gracilis GNS1m male)
ATGTCCGCGCCGCTATCTGCTGAGCTCCGTCAGAAGTATAACGTGCGCTC
TCTTCCGATCCGAAAGCACGACGAGGTGCGCGTTGTTCGCGGCCAGTACA
AGGGTGAAGGAAAAGTTCTTACGTGCTACAGGAAGAAGTATGTCGTCCAT
ATTGAGCGTATCACTCGCGAGAGGGCCAACCAGATGCCGGTGCCTATTGG
TATTCATCCTAGCAACTGTGTTATCACTAAGATCAAGATGGATAAGGACA
GAAAGGCCATCCTCGACAGGAAGAACCGTGAGGCCAAGCAAGAGAAAGGC
AAGTTCTCCGAGTCTGATGTCAATGTGCCCATGGCCGACGTCGATTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:545436..545783-

>Ggra6800.t1 ID=Ggra6800.t1|Name=Ggra6800.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00000056_pilon:545436..545783- (Gracilaria gracilis GNS1m male)
ATGTCCGCGCCGCTATCTGCTGAGCTCCGTCAGAAGTATAACGTGCGCTC
TCTTCCGATCCGAAAGCACGACGAGGTGCGCGTTGTTCGCGGCCAGTACA
AGGGTGAAGGAAAAGTTCTTACGTGCTACAGGAAGAAGTATGTCGTCCAT
ATTGAGCGTATCACTCGCGAGAGGGCCAACCAGATGCCGGTGCCTATTGG
TATTCATCCTAGCAACTGTGTTATCACTAAGATCAAGATGGATAAGGACA
GAAAGGCCATCCTCGACAGGAAGAACCGTGAGGCCAAGCAAGAGAAAGGC
AAGTTCTCCGAGTCTGATGTCAATGTGCCCATGGCCGACGTCGATTAG
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