Ggra6728.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6728.t1
Unique NameGgra6728.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:306097..307239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO36338
Preferred nameMEPCE
PFAMsBin3,Methyltransf_25,Methyltransf_31
Max annot lvl33208|Metazoa
KEGG koko:K15190
GOsGO:0000122,GO:0001085,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006417,GO:0006725,GO:0006807,GO:0006996,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008757,GO:0009451,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016073,GO:0016458,GO:0016740,GO:0016741,GO:0017069,GO:0017148,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032259,GO:0032268,GO:0032269,GO:0032502,GO:0034248,GO:0034249,GO:0034401,GO:0034641,GO:0034660,GO:0035561,GO:0035562,GO:0040029,GO:0040031,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045787,GO:0045814,GO:0045892,GO:0045931,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070828,GO:0070868,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:0097549,GO:0140098,GO:1900087,GO:1901360,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902679,GO:1902806,GO:1902808,GO:1903506,GO:1903507,GO:2000045,GO:2000112,GO:2000113,GO:2001141
Evalue1.27e-39
EggNOG OGsKOG2899@1|root,KOG2899@2759|Eukaryota,39UCR@33154|Opisthokonta,3BFEW@33208|Metazoa
DescriptionsnRNA modification
COG categoryS
BRITEko00000,ko01000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6728Ggra6728Gracilaria gracilis GNS1m malegenetig00000056_pilon 306097..307239 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6728.t1.start1Ggra6728.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 306097..306099 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6728.t1.CDS1Ggra6728.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 306097..307239 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6728.t1.exon1Ggra6728.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 306097..307239 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6728.t1.stop1Ggra6728.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 307237..307239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6728.t1Ggra6728.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 306097..307239 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6728.t1 ID=Ggra6728.t1|Name=Ggra6728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MSTPPKGDTLLAKPNKQPPSRKRPRPPSTSPPAQHSTKKPRAQRKPANAA
VHANTSGAPAKHGSYRNYYNRRLRGNDPSTDDRLPLIRNLCDAYESFSVL
DVGCNDGKLTMEVAKHSRCVRVVGVDIDTKLIRNARASLRPHAQQQMNAS
KTDAKRSSTRSVSFPFNTAFRVEDLSTEQAPPSHSLSDQYNVVLCLSVTK
WVHISGGDQALQRLFHRMYKSLKPGGVLMLEPQPVKSYKLARQKGLAPKE
SSFDHLKMKPSMFSNFLLEQCGFSAVRMLRDKRPSGKAFNRPIYAFFKGN
DAPSLQHFDEAQSSHPQSSNQKQEQPANAVQNESKPSSKHSQPSADTASA
GANGIPANGVGGKQQKNKSKKKREKNATKQ*
back to top

spliced messenger RNA

>Ggra6728.t1 ID=Ggra6728.t1|Name=Ggra6728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000056_pilon:306097..307239+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACGCCGCCCAAAGGCGACACGCTGTTAGCCAAACCTAACAAACA
GCCGCCATCGCGCAAGCGCCCACGGCCCCCTTCTACTTCGCCGCCCGCCC
AACACTCCACCAAGAAGCCACGCGCTCAACGCAAGCCCGCAAATGCCGCC
GTGCATGCAAACACGTCGGGCGCGCCAGCCAAGCACGGCAGCTATCGCAA
CTATTACAACCGCCGTCTTCGCGGCAACGATCCGAGCACGGATGACCGCC
TCCCGCTTATACGCAACCTGTGCGATGCGTACGAAAGCTTCAGTGTGCTC
GATGTGGGATGCAACGACGGCAAGCTTACCATGGAGGTAGCCAAGCACTC
GCGCTGCGTCAGAGTGGTTGGAGTGGACATTGACACAAAACTCATTCGAA
ATGCCCGCGCTTCTCTGCGACCTCATGCGCAGCAACAAATGAACGCCAGC
AAAACTGATGCGAAGCGCTCCTCCACACGTTCTGTTTCGTTTCCGTTCAA
CACAGCGTTTCGCGTGGAGGATTTGTCCACAGAGCAGGCACCTCCATCGC
ACTCACTTTCGGACCAATATAATGTTGTTCTTTGTCTTAGCGTCACTAAG
TGGGTACACATCAGCGGCGGTGATCAAGCATTACAACGATTATTTCATCG
CATGTATAAATCCTTAAAGCCTGGCGGTGTTCTCATGTTAGAGCCTCAGC
CGGTGAAGAGCTACAAGTTGGCCAGACAAAAAGGACTGGCACCCAAAGAA
AGCTCTTTCGATCACTTGAAAATGAAGCCGAGTATGTTCTCAAACTTTCT
ATTAGAGCAATGTGGTTTCAGTGCCGTGCGCATGTTGAGAGACAAACGTC
CTTCCGGCAAAGCGTTCAATAGGCCTATATATGCATTCTTTAAAGGAAAC
GATGCGCCATCACTGCAGCACTTTGATGAAGCTCAAAGCTCCCATCCTCA
ATCCAGCAACCAGAAACAAGAACAACCAGCCAACGCTGTTCAAAACGAAT
CGAAACCGAGCAGCAAGCACAGTCAGCCTTCTGCAGATACTGCCTCTGCG
GGTGCGAACGGAATACCCGCAAACGGTGTCGGCGGTAAACAACAGAAGAA
CAAGTCAAAAAAGAAACGCGAAAAGAACGCTACCAAACAGTAA
back to top

protein sequence of Ggra6728.t1

>Ggra6728.t1 ID=Ggra6728.t1|Name=Ggra6728.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MSTPPKGDTLLAKPNKQPPSRKRPRPPSTSPPAQHSTKKPRAQRKPANAA
VHANTSGAPAKHGSYRNYYNRRLRGNDPSTDDRLPLIRNLCDAYESFSVL
DVGCNDGKLTMEVAKHSRCVRVVGVDIDTKLIRNARASLRPHAQQQMNAS
KTDAKRSSTRSVSFPFNTAFRVEDLSTEQAPPSHSLSDQYNVVLCLSVTK
WVHISGGDQALQRLFHRMYKSLKPGGVLMLEPQPVKSYKLARQKGLAPKE
SSFDHLKMKPSMFSNFLLEQCGFSAVRMLRDKRPSGKAFNRPIYAFFKGN
DAPSLQHFDEAQSSHPQSSNQKQEQPANAVQNESKPSSKHSQPSADTASA
GANGIPANGVGGKQQKNKSKKKREKNATKQ*
back to top

mRNA from alignment at tig00000056_pilon:306097..307239+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6728.t1 ID=Ggra6728.t1|Name=Ggra6728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000056_pilon:306097..307239+ (Gracilaria gracilis GNS1m male)
ATGAGCACGCCGCCCAAAGGCGACACGCTGTTAGCCAAACCTAACAAACA
GCCGCCATCGCGCAAGCGCCCACGGCCCCCTTCTACTTCGCCGCCCGCCC
AACACTCCACCAAGAAGCCACGCGCTCAACGCAAGCCCGCAAATGCCGCC
GTGCATGCAAACACGTCGGGCGCGCCAGCCAAGCACGGCAGCTATCGCAA
CTATTACAACCGCCGTCTTCGCGGCAACGATCCGAGCACGGATGACCGCC
TCCCGCTTATACGCAACCTGTGCGATGCGTACGAAAGCTTCAGTGTGCTC
GATGTGGGATGCAACGACGGCAAGCTTACCATGGAGGTAGCCAAGCACTC
GCGCTGCGTCAGAGTGGTTGGAGTGGACATTGACACAAAACTCATTCGAA
ATGCCCGCGCTTCTCTGCGACCTCATGCGCAGCAACAAATGAACGCCAGC
AAAACTGATGCGAAGCGCTCCTCCACACGTTCTGTTTCGTTTCCGTTCAA
CACAGCGTTTCGCGTGGAGGATTTGTCCACAGAGCAGGCACCTCCATCGC
ACTCACTTTCGGACCAATATAATGTTGTTCTTTGTCTTAGCGTCACTAAG
TGGGTACACATCAGCGGCGGTGATCAAGCATTACAACGATTATTTCATCG
CATGTATAAATCCTTAAAGCCTGGCGGTGTTCTCATGTTAGAGCCTCAGC
CGGTGAAGAGCTACAAGTTGGCCAGACAAAAAGGACTGGCACCCAAAGAA
AGCTCTTTCGATCACTTGAAAATGAAGCCGAGTATGTTCTCAAACTTTCT
ATTAGAGCAATGTGGTTTCAGTGCCGTGCGCATGTTGAGAGACAAACGTC
CTTCCGGCAAAGCGTTCAATAGGCCTATATATGCATTCTTTAAAGGAAAC
GATGCGCCATCACTGCAGCACTTTGATGAAGCTCAAAGCTCCCATCCTCA
ATCCAGCAACCAGAAACAAGAACAACCAGCCAACGCTGTTCAAAACGAAT
CGAAACCGAGCAGCAAGCACAGTCAGCCTTCTGCAGATACTGCCTCTGCG
GGTGCGAACGGAATACCCGCAAACGGTGTCGGCGGTAAACAACAGAAGAA
CAAGTCAAAAAAGAAACGCGAAAAGAACGCTACCAAACAGTAA
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:306097..307239+

>Ggra6728.t1 ID=Ggra6728.t1|Name=Ggra6728.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000056_pilon:306097..307239+ (Gracilaria gracilis GNS1m male)
ATGAGCACGCCGCCCAAAGGCGACACGCTGTTAGCCAAACCTAACAAACA
GCCGCCATCGCGCAAGCGCCCACGGCCCCCTTCTACTTCGCCGCCCGCCC
AACACTCCACCAAGAAGCCACGCGCTCAACGCAAGCCCGCAAATGCCGCC
GTGCATGCAAACACGTCGGGCGCGCCAGCCAAGCACGGCAGCTATCGCAA
CTATTACAACCGCCGTCTTCGCGGCAACGATCCGAGCACGGATGACCGCC
TCCCGCTTATACGCAACCTGTGCGATGCGTACGAAAGCTTCAGTGTGCTC
GATGTGGGATGCAACGACGGCAAGCTTACCATGGAGGTAGCCAAGCACTC
GCGCTGCGTCAGAGTGGTTGGAGTGGACATTGACACAAAACTCATTCGAA
ATGCCCGCGCTTCTCTGCGACCTCATGCGCAGCAACAAATGAACGCCAGC
AAAACTGATGCGAAGCGCTCCTCCACACGTTCTGTTTCGTTTCCGTTCAA
CACAGCGTTTCGCGTGGAGGATTTGTCCACAGAGCAGGCACCTCCATCGC
ACTCACTTTCGGACCAATATAATGTTGTTCTTTGTCTTAGCGTCACTAAG
TGGGTACACATCAGCGGCGGTGATCAAGCATTACAACGATTATTTCATCG
CATGTATAAATCCTTAAAGCCTGGCGGTGTTCTCATGTTAGAGCCTCAGC
CGGTGAAGAGCTACAAGTTGGCCAGACAAAAAGGACTGGCACCCAAAGAA
AGCTCTTTCGATCACTTGAAAATGAAGCCGAGTATGTTCTCAAACTTTCT
ATTAGAGCAATGTGGTTTCAGTGCCGTGCGCATGTTGAGAGACAAACGTC
CTTCCGGCAAAGCGTTCAATAGGCCTATATATGCATTCTTTAAAGGAAAC
GATGCGCCATCACTGCAGCACTTTGATGAAGCTCAAAGCTCCCATCCTCA
ATCCAGCAACCAGAAACAAGAACAACCAGCCAACGCTGTTCAAAACGAAT
CGAAACCGAGCAGCAAGCACAGTCAGCCTTCTGCAGATACTGCCTCTGCG
GGTGCGAACGGAATACCCGCAAACGGTGTCGGCGGTAAACAACAGAAGAA
CAAGTCAAAAAAGAAACGCGAAAAGAACGCTACCAAACAGTAA
back to top