Ggra6801.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6801.t1
Unique NameGgra6801.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length559
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:546604..548481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3656.XP_008445968.1
PFAMsC2
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044232,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0071944,GO:0098827
Evalue1.93e-37
EggNOG OGsCOG5038@1|root,KOG1012@2759|Eukaryota,37JDH@33090|Viridiplantae,3GFJI@35493|Streptophyta,4JJ3M@91835|fabids
DescriptionProtein kinase C conserved region 2 (CalB)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6801Ggra6801Gracilaria gracilis GNS1m malegenetig00000056_pilon 546604..548481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6801.t1Ggra6801.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 546604..548481 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6801.t1.start1Ggra6801.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 546604..546606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6801.t1.CDS1Ggra6801.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 546604..546926 +
Ggra6801.t1.CDS2Ggra6801.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 547059..548100 +
Ggra6801.t1.CDS3Ggra6801.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 548170..548481 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6801.t1.exon1Ggra6801.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 546604..546926 +
Ggra6801.t1.exon2Ggra6801.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 547059..548100 +
Ggra6801.t1.exon3Ggra6801.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 548170..548481 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6801.t1.intron1Ggra6801.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 546927..547058 +
Ggra6801.t1.intron2Ggra6801.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 548101..548169 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6801.t1.stop1Ggra6801.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 548479..548481 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6801.t1 ID=Ggra6801.t1|Name=Ggra6801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=559bp
MRLVVLTDFSSNPLLAMRDRVADPLSAVMIAGAAALGGFASWFLKRNDNE
LDLPAGTQNTNGNTRMSETEGGTREVYQLQDDDGINLTTLPSPARATAGE
NAVWLNMSLSTLWRLFRKSTNGIVQDVLQPVLDDMQFPDCVQSVKITNLT
LGESPCLLRRIQRLPSRALNEIQYRFSLRLIGDKEGRINMDVVMRLPALN
RLVTVPICVSSLDIDAKVWLGLTVVPYKPWLRFAQWSLTSMPTVRMSISV
ANLIPVTAIPVLSNVLRKIFTVDLPKEFLFPKAQLVDLMDEEDIDVSLER
SVLEARGIFSSFEDMSNDELCSSFPVLTSLFTNIDVNSDGQLSPEEISKG
LIEWGYASQAERRSITNLLDVNNDGIVSLKEFISVWGDLKNLFIPRRFRG
IVSGVLIRAENLRLPVFGFTDPYVVISIESQTVTSKRNKATSRTGEDIGS
AVWNEGWELYVEQPESAVLRVEVREGSRFTFFKGALPPPSQKPVHSGVLA
VQEPNRIVNGRGTLIGYGSLPVSKLSSFAEALWVDLTTGGGRIRLDIQLN
EFIDPSLV*
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spliced messenger RNA

>Ggra6801.t1 ID=Ggra6801.t1|Name=Ggra6801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00000056_pilon:546604..548481+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTCGTCGTGCTCACCGATTTTTCATCAAACCCGCTGCTTGCTAT
GCGAGACCGAGTGGCGGATCCATTATCTGCGGTCATGATTGCAGGTGCTG
CTGCTCTAGGTGGCTTTGCCTCTTGGTTTTTGAAAAGAAATGATAACGAG
CTTGATCTACCAGCTGGCACCCAAAATACCAATGGTAACACGAGGATGTC
TGAGACGGAAGGCGGTACGCGGGAAGTATATCAACTCCAGGACGATGATG
GTATCAATCTTACTACTCTTCCCTCTCCTGCGAGAGCTACTGCTGGTGAG
AATGCTGTGTGGCTGAATATGAGTCTGAGTACTCTCTGGCGCCTTTTCAG
GAAGTCCACAAACGGAATCGTACAAGATGTGCTCCAGCCAGTTCTCGATG
ATATGCAGTTTCCTGATTGTGTTCAATCTGTCAAGATAACGAATCTCACC
CTCGGAGAAAGTCCTTGTCTGCTTCGCAGGATACAGCGCCTGCCGTCTAG
AGCCCTCAATGAGATTCAGTACCGATTTTCTCTGCGCCTCATCGGCGACA
AAGAAGGACGTATCAACATGGACGTGGTTATGCGGCTACCAGCTTTGAAT
AGATTGGTAACAGTTCCCATATGCGTCAGCTCGTTAGACATTGATGCTAA
GGTTTGGCTTGGACTTACTGTTGTTCCGTATAAACCATGGCTTCGATTTG
CGCAATGGTCGCTCACTAGTATGCCCACCGTCCGCATGAGCATTTCCGTT
GCCAACTTGATTCCAGTCACGGCTATACCGGTTCTATCAAACGTGCTCCG
AAAGATTTTCACCGTGGACCTTCCGAAAGAGTTCTTGTTCCCGAAGGCAC
AGCTTGTTGATCTCATGGACGAAGAAGACATAGATGTGAGTCTTGAGCGA
AGCGTTCTGGAGGCCCGAGGAATATTTTCGTCGTTTGAAGATATGTCTAA
TGATGAGCTATGCTCAAGTTTTCCGGTACTCACCAGTTTATTCACCAACA
TTGACGTCAACAGCGACGGTCAACTTTCTCCAGAGGAAATATCGAAAGGC
TTGATAGAGTGGGGGTATGCCTCTCAGGCAGAGCGTCGCTCCATTACAAA
CTTACTTGATGTGAACAACGATGGCATCGTCAGTCTGAAAGAATTCATCA
GCGTGTGGGGTGATTTGAAGAACCTCTTCATTCCCAGACGATTCCGAGGC
ATTGTGAGCGGAGTTCTTATCCGAGCCGAAAATCTTCGCCTGCCGGTATT
TGGTTTCACAGACCCCTACGTTGTCATCTCGATCGAATCACAGACGGTGA
CTTCTAAGAGAAACAAGGCTACATCTCGCACAGGCGAGGACATAGGAAGT
GCTGTTTGGAATGAGGGTTGGGAATTGTACGTTGAGCAACCAGAGTCAGC
GGTCCTCCGCGTAGAAGTTCGTGAAGGCTCTCGTTTTACATTTTTCAAAG
GTGCTCTACCTCCACCGTCACAGAAGCCCGTTCATAGTGGTGTACTTGCT
GTGCAAGAACCGAACAGAATTGTTAACGGTCGCGGGACTCTCATAGGATA
CGGGAGTTTGCCAGTGTCCAAGTTGAGCTCCTTTGCTGAAGCTCTTTGGG
TAGATCTAACAACCGGAGGTGGTCGCATACGTTTAGATATCCAGCTCAAC
GAGTTTATCGATCCTTCGTTAGTATAG
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protein sequence of Ggra6801.t1

>Ggra6801.t1 ID=Ggra6801.t1|Name=Ggra6801.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=559bp
MRLVVLTDFSSNPLLAMRDRVADPLSAVMIAGAAALGGFASWFLKRNDNE
LDLPAGTQNTNGNTRMSETEGGTREVYQLQDDDGINLTTLPSPARATAGE
NAVWLNMSLSTLWRLFRKSTNGIVQDVLQPVLDDMQFPDCVQSVKITNLT
LGESPCLLRRIQRLPSRALNEIQYRFSLRLIGDKEGRINMDVVMRLPALN
RLVTVPICVSSLDIDAKVWLGLTVVPYKPWLRFAQWSLTSMPTVRMSISV
ANLIPVTAIPVLSNVLRKIFTVDLPKEFLFPKAQLVDLMDEEDIDVSLER
SVLEARGIFSSFEDMSNDELCSSFPVLTSLFTNIDVNSDGQLSPEEISKG
LIEWGYASQAERRSITNLLDVNNDGIVSLKEFISVWGDLKNLFIPRRFRG
IVSGVLIRAENLRLPVFGFTDPYVVISIESQTVTSKRNKATSRTGEDIGS
AVWNEGWELYVEQPESAVLRVEVREGSRFTFFKGALPPPSQKPVHSGVLA
VQEPNRIVNGRGTLIGYGSLPVSKLSSFAEALWVDLTTGGGRIRLDIQLN
EFIDPSLV*
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mRNA from alignment at tig00000056_pilon:546604..548481+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6801.t1 ID=Ggra6801.t1|Name=Ggra6801.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1878bp|location=Sequence derived from alignment at tig00000056_pilon:546604..548481+ (Gracilaria gracilis GNS1m male)
ATGCGTCTCGTCGTGCTCACCGATTTTTCATCAAACCCGCTGCTTGCTAT
GCGAGACCGAGTGGCGGATCCATTATCTGCGGTCATGATTGCAGGTGCTG
CTGCTCTAGGTGGCTTTGCCTCTTGGTTTTTGAAAAGAAATGATAACGAG
CTTGATCTACCAGCTGGCACCCAAAATACCAATGGTAACACGAGGATGTC
TGAGACGGAAGGCGGTACGCGGGAAGTATATCAACTCCAGGACGATGATG
GTATCAATCTTACTACTCTTCCCTCTCCTGCGAGAGCTACTGCTGGTGAG
AATGCTGTGTGGCTGAATATGAGGTAGGTTCCTTCACAACGCATGTATAC
ACCGCGAATACAATTAAGCGCGCCGAACTACGAGTAGCTTGCGTTTTTTT
GTTCTTCGTTCAGCGTTGTGAATCGGAATTCTCACATCCTTTCGTTGCGT
TCTAGTCTGAGTACTCTCTGGCGCCTTTTCAGGAAGTCCACAAACGGAAT
CGTACAAGATGTGCTCCAGCCAGTTCTCGATGATATGCAGTTTCCTGATT
GTGTTCAATCTGTCAAGATAACGAATCTCACCCTCGGAGAAAGTCCTTGT
CTGCTTCGCAGGATACAGCGCCTGCCGTCTAGAGCCCTCAATGAGATTCA
GTACCGATTTTCTCTGCGCCTCATCGGCGACAAAGAAGGACGTATCAACA
TGGACGTGGTTATGCGGCTACCAGCTTTGAATAGATTGGTAACAGTTCCC
ATATGCGTCAGCTCGTTAGACATTGATGCTAAGGTTTGGCTTGGACTTAC
TGTTGTTCCGTATAAACCATGGCTTCGATTTGCGCAATGGTCGCTCACTA
GTATGCCCACCGTCCGCATGAGCATTTCCGTTGCCAACTTGATTCCAGTC
ACGGCTATACCGGTTCTATCAAACGTGCTCCGAAAGATTTTCACCGTGGA
CCTTCCGAAAGAGTTCTTGTTCCCGAAGGCACAGCTTGTTGATCTCATGG
ACGAAGAAGACATAGATGTGAGTCTTGAGCGAAGCGTTCTGGAGGCCCGA
GGAATATTTTCGTCGTTTGAAGATATGTCTAATGATGAGCTATGCTCAAG
TTTTCCGGTACTCACCAGTTTATTCACCAACATTGACGTCAACAGCGACG
GTCAACTTTCTCCAGAGGAAATATCGAAAGGCTTGATAGAGTGGGGGTAT
GCCTCTCAGGCAGAGCGTCGCTCCATTACAAACTTACTTGATGTGAACAA
CGATGGCATCGTCAGTCTGAAAGAATTCATCAGCGTGTGGGGTGATTTGA
AGAACCTCTTCATTCCCAGACGATTCCGAGGCATTGTGAGCGGAGTTCTT
ATCCGAGCCGAAAATCTTCGCCTGCCGGTATTTGGTTTCACAGACCCCTA
CGTTGTCATCTCGATCGAATCACAGACGGTGACTTCTAAGAGAAACAAGG
CTACATCTCGCACAGGCGAGGACATAGGAAGTGCTGTTTGGAATGAGGTA
AGTGCATGTAATTGAGTGTCGTGCAAATTCCTTGTTTTCTTTCCTACTAA
CTAGTGATATACAAAGGGTTGGGAATTGTACGTTGAGCAACCAGAGTCAG
CGGTCCTCCGCGTAGAAGTTCGTGAAGGCTCTCGTTTTACATTTTTCAAA
GGTGCTCTACCTCCACCGTCACAGAAGCCCGTTCATAGTGGTGTACTTGC
TGTGCAAGAACCGAACAGAATTGTTAACGGTCGCGGGACTCTCATAGGAT
ACGGGAGTTTGCCAGTGTCCAAGTTGAGCTCCTTTGCTGAAGCTCTTTGG
GTAGATCTAACAACCGGAGGTGGTCGCATACGTTTAGATATCCAGCTCAA
CGAGTTTATCGATCCTTCGTTAGTATAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:546604..548481+

>Ggra6801.t1 ID=Ggra6801.t1|Name=Ggra6801.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1677bp|location=Sequence derived from alignment at tig00000056_pilon:546604..548481+ (Gracilaria gracilis GNS1m male)
ATGCGTCTCGTCGTGCTCACCGATTTTTCATCAAACCCGCTGCTTGCTAT
GCGAGACCGAGTGGCGGATCCATTATCTGCGGTCATGATTGCAGGTGCTG
CTGCTCTAGGTGGCTTTGCCTCTTGGTTTTTGAAAAGAAATGATAACGAG
CTTGATCTACCAGCTGGCACCCAAAATACCAATGGTAACACGAGGATGTC
TGAGACGGAAGGCGGTACGCGGGAAGTATATCAACTCCAGGACGATGATG
GTATCAATCTTACTACTCTTCCCTCTCCTGCGAGAGCTACTGCTGGTGAG
AATGCTGTGTGGCTGAATATGAGTCTGAGTACTCTCTGGCGCCTTTTCAG
GAAGTCCACAAACGGAATCGTACAAGATGTGCTCCAGCCAGTTCTCGATG
ATATGCAGTTTCCTGATTGTGTTCAATCTGTCAAGATAACGAATCTCACC
CTCGGAGAAAGTCCTTGTCTGCTTCGCAGGATACAGCGCCTGCCGTCTAG
AGCCCTCAATGAGATTCAGTACCGATTTTCTCTGCGCCTCATCGGCGACA
AAGAAGGACGTATCAACATGGACGTGGTTATGCGGCTACCAGCTTTGAAT
AGATTGGTAACAGTTCCCATATGCGTCAGCTCGTTAGACATTGATGCTAA
GGTTTGGCTTGGACTTACTGTTGTTCCGTATAAACCATGGCTTCGATTTG
CGCAATGGTCGCTCACTAGTATGCCCACCGTCCGCATGAGCATTTCCGTT
GCCAACTTGATTCCAGTCACGGCTATACCGGTTCTATCAAACGTGCTCCG
AAAGATTTTCACCGTGGACCTTCCGAAAGAGTTCTTGTTCCCGAAGGCAC
AGCTTGTTGATCTCATGGACGAAGAAGACATAGATGTGAGTCTTGAGCGA
AGCGTTCTGGAGGCCCGAGGAATATTTTCGTCGTTTGAAGATATGTCTAA
TGATGAGCTATGCTCAAGTTTTCCGGTACTCACCAGTTTATTCACCAACA
TTGACGTCAACAGCGACGGTCAACTTTCTCCAGAGGAAATATCGAAAGGC
TTGATAGAGTGGGGGTATGCCTCTCAGGCAGAGCGTCGCTCCATTACAAA
CTTACTTGATGTGAACAACGATGGCATCGTCAGTCTGAAAGAATTCATCA
GCGTGTGGGGTGATTTGAAGAACCTCTTCATTCCCAGACGATTCCGAGGC
ATTGTGAGCGGAGTTCTTATCCGAGCCGAAAATCTTCGCCTGCCGGTATT
TGGTTTCACAGACCCCTACGTTGTCATCTCGATCGAATCACAGACGGTGA
CTTCTAAGAGAAACAAGGCTACATCTCGCACAGGCGAGGACATAGGAAGT
GCTGTTTGGAATGAGGGTTGGGAATTGTACGTTGAGCAACCAGAGTCAGC
GGTCCTCCGCGTAGAAGTTCGTGAAGGCTCTCGTTTTACATTTTTCAAAG
GTGCTCTACCTCCACCGTCACAGAAGCCCGTTCATAGTGGTGTACTTGCT
GTGCAAGAACCGAACAGAATTGTTAACGGTCGCGGGACTCTCATAGGATA
CGGGAGTTTGCCAGTGTCCAAGTTGAGCTCCTTTGCTGAAGCTCTTTGGG
TAGATCTAACAACCGGAGGTGGTCGCATACGTTTAGATATCCAGCTCAAC
GAGTTTATCGATCCTTCGTTAGTATAG
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