Ggra6837.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6837.t1
Unique NameGgra6837.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length143
Homology
BLAST of Ggra6837.t1 vs. uniprot
Match: A0A2E6J9V2 (50S ribosomal protein L27 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6J9V2_9GAMM)

HSP 1 Score: 101 bits (251), Expect = 2.070e-25
Identity = 52/87 (59.77%), Postives = 61/87 (70.11%), Query Frame = 0
Query:   25 ASKKAKGSSNNGRDSVGKRLGPKVSDGEYVETGHILVRQRGTKMWPGMDVGCGRDHTLYALKNGLARFCRAKPQNGKKKGRVYVSVE 111
            A KKA GS+NNGRDS+ KRLG K+  G+ V  G I+VRQRGTK  PG +VGCGRDHTL+A  NG+ RF    PQN K     +VSVE
Sbjct:    2 AHKKAGGSTNNGRDSISKRLGVKLFGGQGVNAGGIIVRQRGTKFHPGENVGCGRDHTLFAKANGVVRFSERGPQNRK-----FVSVE 83          
BLAST of Ggra6837.t1 vs. uniprot
Match: A0A847KRG1 (50S ribosomal protein L27 n=1 Tax=Acetobacter sp. TaxID=440 RepID=A0A847KRG1_9PROT)

HSP 1 Score: 99.0 bits (245), Expect = 1.880e-24
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 0
Query:   25 ASKKAKGSSNNGRDSVGKRLGPKVSDGEYVETGHILVRQRGTKMWPGMDVGCGRDHTLYALKNGLARFCRAKPQNGKKKGRVYVSVEEPP 114
            A KKA GSS NGRDS G+RLG K   G+ V  G+I+VRQRGTKM PG +VG GRDHT++AL +G  RF R      +++GRV+VSVE  P
Sbjct:    2 AQKKAGGSSRNGRDSAGRRLGVKKFGGQSVIAGNIIVRQRGTKMLPGENVGVGRDHTIFALVDGAVRFAR------RREGRVHVSVEALP 85          
BLAST of Ggra6837.t1 vs. uniprot
Match: A0A7S3PK05 (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PK05_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.630e-24
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 0
Query:   22 IRYASKKAKGSSNNGRDSVGKRLGPKVSDGEYVETGHILVRQRGTKMWPGMDVGCGRDHTLYALKNGLARFCRAKPQNGKKKGRV--YVSVEEPPDW 116
            +R+A+KKA GS+NNGRDS GKRLG K+  G++ + G I+VRQRGT + PG ++G GRDHTL+AL +G  +F   +     K GR+  YV +E  PDW
Sbjct:   47 VRFATKKAGGSTNNGRDSPGKRLGVKIYGGQFAKHGAIVVRQRGTPVHPGFNIGMGRDHTLFALTSGKVKFYSKEV----KPGRIVKYVGIEPLPDW 139          
BLAST of Ggra6837.t1 vs. uniprot
Match: A0A2E7DJ89 (50S ribosomal protein L27 n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7DJ89_9GAMM)

HSP 1 Score: 98.2 bits (243), Expect = 3.370e-24
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 0
Query:   25 ASKKAKGSSNNGRDSVGKRLGPKVSDGEYVETGHILVRQRGTKMWPGMDVGCGRDHTLYALKNGLARFCRAKPQNGKKKGRVYVSVE 111
            A KKA GS+NNGRDSV KRLG K+  G+ V  G+I+VRQRGTK  PG +VGCG+DHTLYA  +G+ +F    P + K     +VSVE
Sbjct:    2 AHKKAGGSTNNGRDSVSKRLGVKLFGGQQVSAGNIIVRQRGTKFHPGENVGCGKDHTLYAKSDGIVKFAEKGPHSRK-----FVSVE 83          
BLAST of Ggra6837.t1 vs. uniprot
Match: RL27 (50S ribosomal protein L27 n=8 Tax=Orientia tsutsugamushi TaxID=784 RepID=RL27_ORITI)

HSP 1 Score: 98.2 bits (243), Expect = 3.770e-24
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = 0
Query:   25 ASKKAKGSSNNGRDSVGKRLGPKVSDGEYVETGHILVRQRGTKMWPGMDVGCGRDHTLYALKNGLARFCRAKPQNGKKKGRVYVSV 110
            A+KKA GSS NGRDS G+RLG K SDG+ V  G+I+V+QRGTK +PG +VG G+DHT+++L +G  +F R      KKK RV++SV
Sbjct:    2 ATKKAGGSSKNGRDSAGRRLGLKKSDGQLVNAGNIIVKQRGTKFYPGKNVGLGKDHTIFSLVSGKVKFFR------KKKNRVFISV 81          
BLAST of Ggra6837.t1 vs. uniprot
Match: A0A0F3MGX8 (50S ribosomal protein L27 n=1 Tax=Orientia chuto str. Dubai TaxID=1359168 RepID=A0A0F3MGX8_9RICK)

HSP 1 Score: 97.8 bits (242), Expect = 5.350e-24
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 0
Query:   25 ASKKAKGSSNNGRDSVGKRLGPKVSDGEYVETGHILVRQRGTKMWPGMDVGCGRDHTLYALKNGLARFCRAKPQNGKKKGRVYVSV 110
            A+KKA GSS NGRDS G+RLG K SDG++V+ G+I+VRQRGTK  PG +VG G+DHT+++L  G  +F R      KK  RV++SV
Sbjct:    2 ATKKAGGSSKNGRDSAGRRLGIKKSDGQFVKAGNIIVRQRGTKFHPGKNVGLGKDHTIFSLTTGKVKFFR------KKNNRVFISV 81          
BLAST of Ggra6837.t1 vs. uniprot
Match: A0A7S0ZGH9 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGH9_9RHOD)

HSP 1 Score: 100 bits (250), Expect = 7.140e-24
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0
Query:   22 IRYASKKAKGSSNNGRDSVGKRLGPKVSDGEYVETGHILVRQRGTKMWPGMDVGCGRDHTLYALKNGLARFCRAKPQNGKKKGRVYVSVEEP 113
            IR ASKKAKGS+ NGRDS GK +GPKV DG+ V+ G IL+RQRGT   P + VG GRD+TL+AL++G  RF R +    K   RV+++++ P
Sbjct:   61 IREASKKAKGSTKNGRDSRGKHMGPKVVDGQIVKAGMILMRQRGTTAHPAVGVGRGRDNTLFALESGRVRFLRMRAPKTKFHERVFLTIQPP 152          
BLAST of Ggra6837.t1 vs. uniprot
Match: R6XWB0 (50S ribosomal protein L27 n=2 Tax=Eubacteriales TaxID=186802 RepID=R6XWB0_9CLOT)

HSP 1 Score: 97.4 bits (241), Expect = 8.240e-24
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 0
Query:   24 YASKKAKGSSNNGRDSVGKRLGPKVSDGEYVETGHILVRQRGTKMWPGMDVGCGRDHTLYALKNGLARFCRAKPQNGK 101
            +A KK  GSS+NGRDS  KRLGPK SDG++V  G+IL+RQRGTK+ PG +VG G D TLYALK+G+ RF R K +N K
Sbjct:    8 FAHKKGSGSSHNGRDSAAKRLGPKRSDGQFVLAGNILMRQRGTKIHPGTNVGIGSDDTLYALKDGIVRFER-KGKNDK 84          
BLAST of Ggra6837.t1 vs. uniprot
Match: A0A101VDQ7 (50S ribosomal protein L27 n=3 Tax=Sphingomonadales TaxID=204457 RepID=A0A101VDQ7_9SPHN)

HSP 1 Score: 97.1 bits (240), Expect = 1.070e-23
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 0
Query:   25 ASKKAKGSSNNGRDSVGKRLGPKVSDGEYVETGHILVRQRGTKMWPGMDVGCGRDHTLYALKNGLARFCRAKPQNGKKKGRVYVSVE 111
            A KKA GSS NGRDSVG+RLG K   G+ V  G+I+VRQRGTK +PG +VG GRDHTL+AL+NG+ RF + K       GR +VSV+
Sbjct:    2 AHKKAGGSSRNGRDSVGRRLGVKKFGGQEVVGGNIIVRQRGTKFYPGTNVGMGRDHTLFALENGVVRFHQGKL------GRKFVSVD 82          
BLAST of Ggra6837.t1 vs. uniprot
Match: A0A2E3B515 (50S ribosomal protein L27 n=5 Tax=Bacteria TaxID=2 RepID=A0A2E3B515_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 1.360e-23
Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 0
Query:   28 KAKGSSNNGRDSVGKRLGPKVSDGEYVETGHILVRQRGTKMWPGMDVGCGRDHTLYALKNGLARFCRAKPQNGKKKGRVYVSV 110
            KA GSS NGRDS G+RLG K+  G+ V TG I+VRQRGTK +PG +VG GRDHTL+ALKNGL  F +      K K +V+VSV
Sbjct:    5 KAAGSSKNGRDSAGRRLGVKLFGGQSVNTGGIIVRQRGTKFYPGENVGIGRDHTLFALKNGLVTFKK------KGKSKVFVSV 81          
The following BLAST results are available for this feature:
BLAST of Ggra6837.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6J9V22.070e-2559.7750S ribosomal protein L27 n=1 Tax=Gammaproteobacte... [more]
A0A847KRG11.880e-2457.7850S ribosomal protein L27 n=1 Tax=Acetobacter sp. ... [more]
A0A7S3PK052.630e-2451.55Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2E7DJ893.370e-2456.3250S ribosomal protein L27 n=2 Tax=Gammaproteobacte... [more]
RL273.770e-2455.8150S ribosomal protein L27 n=8 Tax=Orientia tsutsug... [more]
A0A0F3MGX85.350e-2455.8150S ribosomal protein L27 n=1 Tax=Orientia chuto s... [more]
A0A7S0ZGH97.140e-2454.35Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
R6XWB08.240e-2462.8250S ribosomal protein L27 n=2 Tax=Eubacteriales Ta... [more]
A0A101VDQ71.070e-2358.6250S ribosomal protein L27 n=3 Tax=Sphingomonadales... [more]
A0A2E3B5151.360e-2360.2450S ribosomal protein L27 n=5 Tax=Bacteria TaxID=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001684Ribosomal protein L27PRINTSPR00063RIBOSOMALL27coord: 27..51
score: 58.46
coord: 77..101
score: 36.77
coord: 52..76
score: 53.69
IPR001684Ribosomal protein L27TIGRFAMTIGR00062TIGR00062coord: 25..103
e-value: 9.8E-32
score: 106.8
IPR001684Ribosomal protein L27PFAMPF01016Ribosomal_L27coord: 25..110
e-value: 1.1E-30
score: 105.5
IPR001684Ribosomal protein L27PANTHERPTHR15893RIBOSOMAL PROTEIN L27coord: 13..114
NoneNo IPR availableGENE3D2.40.50.100coord: 30..129
e-value: 1.8E-25
score: 91.1
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 25..97
IPR018261Ribosomal protein L27, conserved sitePROSITEPS00831RIBOSOMAL_L27coord: 57..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:641165..641593 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6837.t1Ggra6837.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 641165..641593 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6837.t1 ID=Ggra6837.t1|Name=Ggra6837.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=143bp
MQTLISGCRRIASTISSQTTFIRYASKKAKGSSNNGRDSVGKRLGPKVSD
GEYVETGHILVRQRGTKMWPGMDVGCGRDHTLYALKNGLARFCRAKPQNG
KKKGRVYVSVEEPPDWRWKSIQKKIKRLEIARYRGPILHAPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001684Ribosomal_L27
IPR018261Ribosomal_L27_CS