Ggra6804.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6804.t1
Unique NameGgra6804.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:555735..556300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706177.1
PFAMsThioredoxin
Max annot lvl2759|Eukaryota
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
GOsGO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008047,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0030234,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
Evalue3.23e-34
EggNOG OGsCOG0526@1|root,KOG0910@2759|Eukaryota
Descriptionglycerol ether metabolic process
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6804Ggra6804Gracilaria gracilis GNS1m malegenetig00000056_pilon 555735..556300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6804.t1Ggra6804.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 555735..556300 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6804.t1.stop1Ggra6804.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 555735..555737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6804.t1.CDS1Ggra6804.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 555735..556010 -
Ggra6804.t1.CDS2Ggra6804.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 556094..556300 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6804.t1.exon1Ggra6804.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 555735..556010 -
Ggra6804.t1.exon2Ggra6804.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 556094..556300 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6804.t1.intron1Ggra6804.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 556011..556093 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6804.t1.start1Ggra6804.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 556298..556300 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6804.t1 ID=Ggra6804.t1|Name=Ggra6804.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=161bp
MHSSSAFVTSFAPFRRSNTLRASPLSSGATCPAVRRTRPARKHATIRAST
PLEVDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDG
SLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGTAYGLKEGAMGKNELQQ
YILEHMKDDE*
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spliced messenger RNA

>Ggra6804.t1 ID=Ggra6804.t1|Name=Ggra6804.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000056_pilon:555735..556300- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAGCTCTTCCGCTTTTGTCACGTCGTTCGCGCCGTTCCGCAGATC
AAATACACTGCGAGCTAGTCCGCTGAGCTCAGGTGCCACTTGTCCTGCCG
TTCGTCGTACAAGACCTGCGCGTAAACACGCCACAATTCGAGCATCCACC
CCATTAGAAGTGGATTCTGATACGTTTGAAGAAGCGGTCATCAAGCAATC
CGATACGACGCCAGTTCTGGTTGACTTTTATGCCGCGTGGTGTGGACCTT
GCAAGCTGATTGCGCCGCTCATGGATTGGGCTGCCGCCGAGTATGACGGT
AGCCTTAAGGTTTGCAAGATTGACACTGAAAAGAATGAACAATTTGTCTC
GGAGTATGCTATTCGAGGTTTGCCCACCTTTGCTGTGTTTAGAAAAGGTA
CTGCGTATGGGCTGAAGGAGGGCGCTATGGGCAAGAATGAACTCCAACAG
TACATTCTTGAGCACATGAAGGACGACGAATGA
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protein sequence of Ggra6804.t1

>Ggra6804.t1 ID=Ggra6804.t1|Name=Ggra6804.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MHSSSAFVTSFAPFRRSNTLRASPLSSGATCPAVRRTRPARKHATIRAST
PLEVDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDG
SLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGTAYGLKEGAMGKNELQQ
YILEHMKDDE*
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mRNA from alignment at tig00000056_pilon:555735..556300-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6804.t1 ID=Ggra6804.t1|Name=Ggra6804.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=566bp|location=Sequence derived from alignment at tig00000056_pilon:555735..556300- (Gracilaria gracilis GNS1m male)
ATGCACAGCTCTTCCGCTTTTGTCACGTCGTTCGCGCCGTTCCGCAGATC
AAATACACTGCGAGCTAGTCCGCTGAGCTCAGGTGCCACTTGTCCTGCCG
TTCGTCGTACAAGACCTGCGCGTAAACACGCCACAATTCGAGCATCCACC
CCATTAGAAGTGGATTCTGATACGTTTGAAGAAGCGGTCATCAAGCAATC
CGATACGGTACGTCACCCAAGCACAGTCGCAGATAAGATCCCAGGCGTAA
AACGTGTGACAAAGCGCTGACCCAATTTGCTTGCGCGCAGACGCCAGTTC
TGGTTGACTTTTATGCCGCGTGGTGTGGACCTTGCAAGCTGATTGCGCCG
CTCATGGATTGGGCTGCCGCCGAGTATGACGGTAGCCTTAAGGTTTGCAA
GATTGACACTGAAAAGAATGAACAATTTGTCTCGGAGTATGCTATTCGAG
GTTTGCCCACCTTTGCTGTGTTTAGAAAAGGTACTGCGTATGGGCTGAAG
GAGGGCGCTATGGGCAAGAATGAACTCCAACAGTACATTCTTGAGCACAT
GAAGGACGACGAATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:555735..556300-

>Ggra6804.t1 ID=Ggra6804.t1|Name=Ggra6804.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=483bp|location=Sequence derived from alignment at tig00000056_pilon:555735..556300- (Gracilaria gracilis GNS1m male)
ATGCACAGCTCTTCCGCTTTTGTCACGTCGTTCGCGCCGTTCCGCAGATC
AAATACACTGCGAGCTAGTCCGCTGAGCTCAGGTGCCACTTGTCCTGCCG
TTCGTCGTACAAGACCTGCGCGTAAACACGCCACAATTCGAGCATCCACC
CCATTAGAAGTGGATTCTGATACGTTTGAAGAAGCGGTCATCAAGCAATC
CGATACGACGCCAGTTCTGGTTGACTTTTATGCCGCGTGGTGTGGACCTT
GCAAGCTGATTGCGCCGCTCATGGATTGGGCTGCCGCCGAGTATGACGGT
AGCCTTAAGGTTTGCAAGATTGACACTGAAAAGAATGAACAATTTGTCTC
GGAGTATGCTATTCGAGGTTTGCCCACCTTTGCTGTGTTTAGAAAAGGTA
CTGCGTATGGGCTGAAGGAGGGCGCTATGGGCAAGAATGAACTCCAACAG
TACATTCTTGAGCACATGAAGGACGACGAATGA
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