Ggra6713.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6713.t1
Unique Name	Ggra6713.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	757

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:269836..272106 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707242.1
Preferred name	MES1
PFAMs	Anticodon_1,MetRS-N,WHEP-TRS,tRNA-synt_1g,tRNA_bind
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01874,ko:K04567
KEGG Reaction	R03658,R03659,R04773
KEGG Pathway	ko00450,ko00970,map00450,map00970
KEGG Module	M00359,M00360
GOs	GO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017102,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue	5.62e-280
EggNOG OGs	COG0143@1\|root,KOG1247@2759\|Eukaryota,KOG2241@2759\|Eukaryota
EC	6.1.1.10,6.1.1.6
Description	tRNA binding
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6713	Ggra6713	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 269836..272106 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6713.t1.start1	Ggra6713.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 269836..269838 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6713.t1.CDS1	Ggra6713.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 269836..272106 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6713.t1.exon1	Ggra6713.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 269836..272106 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6713.t1.stop1	Ggra6713.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 272104..272106 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6713.t1	Ggra6713.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 269836..272106 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:269836..272106+
coding sequence from alignment at tig00000056_pilon:269836..272106+

mRNA sequence

>Ggra6713.t1 ID=Ggra6713.t1|Name=Ggra6713.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=757bp
MNEGVKHPLPSLSGRNILVTSALPYVNNYPHLGNIIGAVLSADVYSRYAR
QRSYNVIYVCGTDEYGTATETKAQQEGISPRQICDKYHALHKQVYEWFDI
NFDVFGRTSTDAHTEIVQSVFEKVHEKGYVTQDTITQLYCEKVCHRFLAD
RYVNGDCPHCGFDDARGDQCDNCGRMLNPAELLRPRCSTCSNEPITRSTT
HLFLDLPKLQSSLAKWVADASEKGKWTNNALAMTRTWLNDQLKARCITRD
LKWGVPVPLEGFTDKVFYVWFDAPLGYPSITAGLCGEDWKKWWLPDEGVD
IKLVQFMGKDNVPFHTIVFPGTLLATNDSWTMLHHISTTDYLNYENGKFS
KSRGIGVFGNDAIETGIPSEVWRYYLLLNRPEGSDAVFTWDDLAAKNNDE
LIKTLGNFMNRVITFLYKSFKGEVPELIPNDEEDEAFTENVNVELKEYKR
LMDEVSLKAGLKKAMAIASIGNLYLQRKVPWNLLKQGDTRTAGSALTYAA
NLAVLVTVLLEPFLGTKFSVKVFSQLGLEYKAGENNLIPERFEVSYWIKA
GMKTGKPQILFTSLTKDQLAEFRRKFSGDASNTEQKDKDNEKRFVLDLRV
GKIVELREHEESERLFVGRVDVGEDEARTVVAGLRDVYTVDELSGRKVVV
VCNLAAANLAGVESQGMILVAEKKKVTKVLSVDNSVSVGDRIVAQNACVG
DLERRLDRKGFQAASKLLRVGKNGDIVFDKTHRLVMQGNEQLGVSSPGVA
EGGKVK*

spliced messenger RNA

>Ggra6713.t1 ID=Ggra6713.t1|Name=Ggra6713.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2271bp|location=Sequence derived from alignment at tig00000056_pilon:269836..272106+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGAAGGCGTTAAGCATCCGCTTCCAAGTCTTTCAGGTCGCAATAT
CCTCGTAACTTCTGCTCTCCCATATGTTAACAACTACCCCCATTTAGGCA
ACATTATTGGGGCAGTACTATCCGCCGATGTTTACTCTCGCTATGCTCGG
CAAAGATCATATAATGTAATATACGTCTGTGGAACCGATGAGTATGGTAC
TGCAACTGAAACCAAGGCACAACAAGAAGGGATAAGTCCTCGGCAAATCT
GTGATAAATATCACGCACTTCATAAACAGGTTTACGAATGGTTCGACATA
AACTTTGATGTGTTTGGAAGAACTAGTACGGATGCACACACTGAAATTGT
ACAATCTGTGTTTGAAAAGGTTCACGAAAAGGGCTATGTCACACAGGATA
CCATTACACAGCTGTACTGCGAAAAGGTTTGTCATCGTTTCTTGGCTGAT
CGCTATGTAAATGGCGATTGTCCACATTGCGGCTTTGATGATGCCAGAGG
CGATCAGTGTGACAATTGTGGCCGTATGCTCAATCCTGCCGAACTTTTGC
GTCCGCGATGTTCCACATGTAGTAATGAACCCATTACAAGGTCGACCACA
CATCTGTTCTTGGATTTACCAAAATTGCAATCCTCGTTGGCAAAATGGGT
TGCAGACGCTTCTGAGAAGGGGAAATGGACAAACAATGCGCTTGCGATGA
CTCGGACATGGTTGAATGATCAGCTCAAGGCTCGATGCATTACCAGAGAT
TTGAAATGGGGTGTTCCCGTTCCTCTGGAAGGGTTTACTGATAAAGTATT
TTACGTGTGGTTTGATGCTCCATTAGGATATCCTTCCATCACTGCCGGTT
TATGTGGTGAAGATTGGAAGAAGTGGTGGTTACCTGATGAAGGTGTGGAC
ATTAAGCTTGTACAATTCATGGGGAAGGATAACGTTCCGTTCCATACCAT
TGTGTTCCCTGGAACTTTGCTAGCTACGAACGACTCTTGGACCATGTTGC
ACCATATTTCGACCACGGACTATCTCAATTACGAAAACGGTAAGTTTAGC
AAGAGTCGCGGTATAGGCGTGTTCGGAAACGATGCGATAGAAACGGGAAT
TCCTTCAGAAGTATGGAGATACTATCTTTTGCTCAATCGGCCAGAAGGAT
CCGATGCAGTGTTCACATGGGACGATCTTGCTGCGAAGAACAACGACGAA
CTTATCAAAACGTTAGGCAACTTCATGAATCGTGTAATCACGTTTCTGTA
CAAATCGTTCAAAGGGGAGGTACCCGAACTAATACCAAACGACGAAGAAG
ACGAAGCGTTCACAGAGAATGTGAATGTGGAATTGAAAGAATATAAACGA
CTCATGGACGAAGTAAGTTTAAAGGCGGGGTTGAAGAAGGCAATGGCAAT
TGCAAGCATTGGAAACTTGTATCTGCAAAGAAAAGTGCCATGGAATCTTC
TCAAGCAAGGCGATACTCGCACGGCCGGTAGCGCTCTCACGTATGCCGCA
AATCTGGCAGTGCTGGTTACAGTGCTTCTGGAACCGTTTCTGGGAACCAA
GTTTTCAGTGAAGGTATTCTCACAACTTGGGTTGGAGTATAAAGCAGGTG
AGAACAACTTAATTCCAGAACGATTCGAGGTTTCGTATTGGATTAAAGCT
GGAATGAAGACAGGGAAACCGCAAATCTTGTTCACTTCACTCACAAAAGA
CCAACTTGCAGAGTTTAGAAGAAAGTTTAGTGGGGATGCGTCGAACACAG
AACAGAAGGACAAGGACAATGAAAAACGATTCGTTCTGGACTTGAGGGTT
GGAAAGATTGTAGAACTTCGTGAACACGAGGAATCGGAACGGTTGTTCGT
GGGAAGAGTGGACGTTGGAGAAGACGAAGCTCGCACTGTGGTGGCTGGTT
TACGTGATGTATACACTGTTGATGAACTGAGTGGAAGAAAAGTAGTGGTG
GTTTGCAATTTGGCAGCTGCTAACCTGGCTGGTGTTGAGTCTCAAGGTAT
GATCTTGGTGGCAGAAAAGAAAAAAGTGACAAAGGTATTAAGTGTGGATA
ACAGCGTTTCTGTTGGGGATCGAATTGTGGCGCAAAATGCTTGTGTGGGC
GATTTGGAGAGACGCTTGGACCGAAAAGGATTCCAAGCAGCAAGCAAGTT
GCTACGAGTGGGAAAGAATGGGGATATTGTGTTTGATAAGACGCATCGCC
TGGTGATGCAGGGGAATGAACAGTTGGGAGTTAGTTCGCCTGGAGTAGCT
GAGGGTGGAAAGGTGAAGTAG

protein sequence of Ggra6713.t1

>Ggra6713.t1 ID=Ggra6713.t1|Name=Ggra6713.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=757bp
MNEGVKHPLPSLSGRNILVTSALPYVNNYPHLGNIIGAVLSADVYSRYAR
QRSYNVIYVCGTDEYGTATETKAQQEGISPRQICDKYHALHKQVYEWFDI
NFDVFGRTSTDAHTEIVQSVFEKVHEKGYVTQDTITQLYCEKVCHRFLAD
RYVNGDCPHCGFDDARGDQCDNCGRMLNPAELLRPRCSTCSNEPITRSTT
HLFLDLPKLQSSLAKWVADASEKGKWTNNALAMTRTWLNDQLKARCITRD
LKWGVPVPLEGFTDKVFYVWFDAPLGYPSITAGLCGEDWKKWWLPDEGVD
IKLVQFMGKDNVPFHTIVFPGTLLATNDSWTMLHHISTTDYLNYENGKFS
KSRGIGVFGNDAIETGIPSEVWRYYLLLNRPEGSDAVFTWDDLAAKNNDE
LIKTLGNFMNRVITFLYKSFKGEVPELIPNDEEDEAFTENVNVELKEYKR
LMDEVSLKAGLKKAMAIASIGNLYLQRKVPWNLLKQGDTRTAGSALTYAA
NLAVLVTVLLEPFLGTKFSVKVFSQLGLEYKAGENNLIPERFEVSYWIKA
GMKTGKPQILFTSLTKDQLAEFRRKFSGDASNTEQKDKDNEKRFVLDLRV
GKIVELREHEESERLFVGRVDVGEDEARTVVAGLRDVYTVDELSGRKVVV
VCNLAAANLAGVESQGMILVAEKKKVTKVLSVDNSVSVGDRIVAQNACVG
DLERRLDRKGFQAASKLLRVGKNGDIVFDKTHRLVMQGNEQLGVSSPGVA
EGGKVK*

mRNA from alignment at tig00000056_pilon:269836..272106+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6713.t1 ID=Ggra6713.t1|Name=Ggra6713.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2271bp|location=Sequence derived from alignment at tig00000056_pilon:269836..272106+ (Gracilaria gracilis GNS1m male)
ATGAATGAAGGCGTTAAGCATCCGCTTCCAAGTCTTTCAGGTCGCAATAT
CCTCGTAACTTCTGCTCTCCCATATGTTAACAACTACCCCCATTTAGGCA
ACATTATTGGGGCAGTACTATCCGCCGATGTTTACTCTCGCTATGCTCGG
CAAAGATCATATAATGTAATATACGTCTGTGGAACCGATGAGTATGGTAC
TGCAACTGAAACCAAGGCACAACAAGAAGGGATAAGTCCTCGGCAAATCT
GTGATAAATATCACGCACTTCATAAACAGGTTTACGAATGGTTCGACATA
AACTTTGATGTGTTTGGAAGAACTAGTACGGATGCACACACTGAAATTGT
ACAATCTGTGTTTGAAAAGGTTCACGAAAAGGGCTATGTCACACAGGATA
CCATTACACAGCTGTACTGCGAAAAGGTTTGTCATCGTTTCTTGGCTGAT
CGCTATGTAAATGGCGATTGTCCACATTGCGGCTTTGATGATGCCAGAGG
CGATCAGTGTGACAATTGTGGCCGTATGCTCAATCCTGCCGAACTTTTGC
GTCCGCGATGTTCCACATGTAGTAATGAACCCATTACAAGGTCGACCACA
CATCTGTTCTTGGATTTACCAAAATTGCAATCCTCGTTGGCAAAATGGGT
TGCAGACGCTTCTGAGAAGGGGAAATGGACAAACAATGCGCTTGCGATGA
CTCGGACATGGTTGAATGATCAGCTCAAGGCTCGATGCATTACCAGAGAT
TTGAAATGGGGTGTTCCCGTTCCTCTGGAAGGGTTTACTGATAAAGTATT
TTACGTGTGGTTTGATGCTCCATTAGGATATCCTTCCATCACTGCCGGTT
TATGTGGTGAAGATTGGAAGAAGTGGTGGTTACCTGATGAAGGTGTGGAC
ATTAAGCTTGTACAATTCATGGGGAAGGATAACGTTCCGTTCCATACCAT
TGTGTTCCCTGGAACTTTGCTAGCTACGAACGACTCTTGGACCATGTTGC
ACCATATTTCGACCACGGACTATCTCAATTACGAAAACGGTAAGTTTAGC
AAGAGTCGCGGTATAGGCGTGTTCGGAAACGATGCGATAGAAACGGGAAT
TCCTTCAGAAGTATGGAGATACTATCTTTTGCTCAATCGGCCAGAAGGAT
CCGATGCAGTGTTCACATGGGACGATCTTGCTGCGAAGAACAACGACGAA
CTTATCAAAACGTTAGGCAACTTCATGAATCGTGTAATCACGTTTCTGTA
CAAATCGTTCAAAGGGGAGGTACCCGAACTAATACCAAACGACGAAGAAG
ACGAAGCGTTCACAGAGAATGTGAATGTGGAATTGAAAGAATATAAACGA
CTCATGGACGAAGTAAGTTTAAAGGCGGGGTTGAAGAAGGCAATGGCAAT
TGCAAGCATTGGAAACTTGTATCTGCAAAGAAAAGTGCCATGGAATCTTC
TCAAGCAAGGCGATACTCGCACGGCCGGTAGCGCTCTCACGTATGCCGCA
AATCTGGCAGTGCTGGTTACAGTGCTTCTGGAACCGTTTCTGGGAACCAA
GTTTTCAGTGAAGGTATTCTCACAACTTGGGTTGGAGTATAAAGCAGGTG
AGAACAACTTAATTCCAGAACGATTCGAGGTTTCGTATTGGATTAAAGCT
GGAATGAAGACAGGGAAACCGCAAATCTTGTTCACTTCACTCACAAAAGA
CCAACTTGCAGAGTTTAGAAGAAAGTTTAGTGGGGATGCGTCGAACACAG
AACAGAAGGACAAGGACAATGAAAAACGATTCGTTCTGGACTTGAGGGTT
GGAAAGATTGTAGAACTTCGTGAACACGAGGAATCGGAACGGTTGTTCGT
GGGAAGAGTGGACGTTGGAGAAGACGAAGCTCGCACTGTGGTGGCTGGTT
TACGTGATGTATACACTGTTGATGAACTGAGTGGAAGAAAAGTAGTGGTG
GTTTGCAATTTGGCAGCTGCTAACCTGGCTGGTGTTGAGTCTCAAGGTAT
GATCTTGGTGGCAGAAAAGAAAAAAGTGACAAAGGTATTAAGTGTGGATA
ACAGCGTTTCTGTTGGGGATCGAATTGTGGCGCAAAATGCTTGTGTGGGC
GATTTGGAGAGACGCTTGGACCGAAAAGGATTCCAAGCAGCAAGCAAGTT
GCTACGAGTGGGAAAGAATGGGGATATTGTGTTTGATAAGACGCATCGCC
TGGTGATGCAGGGGAATGAACAGTTGGGAGTTAGTTCGCCTGGAGTAGCT
GAGGGTGGAAAGGTGAAGTAG

Coding sequence (CDS) from alignment at tig00000056_pilon:269836..272106+

>Ggra6713.t1 ID=Ggra6713.t1|Name=Ggra6713.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2271bp|location=Sequence derived from alignment at tig00000056_pilon:269836..272106+ (Gracilaria gracilis GNS1m male)
ATGAATGAAGGCGTTAAGCATCCGCTTCCAAGTCTTTCAGGTCGCAATAT
CCTCGTAACTTCTGCTCTCCCATATGTTAACAACTACCCCCATTTAGGCA
ACATTATTGGGGCAGTACTATCCGCCGATGTTTACTCTCGCTATGCTCGG
CAAAGATCATATAATGTAATATACGTCTGTGGAACCGATGAGTATGGTAC
TGCAACTGAAACCAAGGCACAACAAGAAGGGATAAGTCCTCGGCAAATCT
GTGATAAATATCACGCACTTCATAAACAGGTTTACGAATGGTTCGACATA
AACTTTGATGTGTTTGGAAGAACTAGTACGGATGCACACACTGAAATTGT
ACAATCTGTGTTTGAAAAGGTTCACGAAAAGGGCTATGTCACACAGGATA
CCATTACACAGCTGTACTGCGAAAAGGTTTGTCATCGTTTCTTGGCTGAT
CGCTATGTAAATGGCGATTGTCCACATTGCGGCTTTGATGATGCCAGAGG
CGATCAGTGTGACAATTGTGGCCGTATGCTCAATCCTGCCGAACTTTTGC
GTCCGCGATGTTCCACATGTAGTAATGAACCCATTACAAGGTCGACCACA
CATCTGTTCTTGGATTTACCAAAATTGCAATCCTCGTTGGCAAAATGGGT
TGCAGACGCTTCTGAGAAGGGGAAATGGACAAACAATGCGCTTGCGATGA
CTCGGACATGGTTGAATGATCAGCTCAAGGCTCGATGCATTACCAGAGAT
TTGAAATGGGGTGTTCCCGTTCCTCTGGAAGGGTTTACTGATAAAGTATT
TTACGTGTGGTTTGATGCTCCATTAGGATATCCTTCCATCACTGCCGGTT
TATGTGGTGAAGATTGGAAGAAGTGGTGGTTACCTGATGAAGGTGTGGAC
ATTAAGCTTGTACAATTCATGGGGAAGGATAACGTTCCGTTCCATACCAT
TGTGTTCCCTGGAACTTTGCTAGCTACGAACGACTCTTGGACCATGTTGC
ACCATATTTCGACCACGGACTATCTCAATTACGAAAACGGTAAGTTTAGC
AAGAGTCGCGGTATAGGCGTGTTCGGAAACGATGCGATAGAAACGGGAAT
TCCTTCAGAAGTATGGAGATACTATCTTTTGCTCAATCGGCCAGAAGGAT
CCGATGCAGTGTTCACATGGGACGATCTTGCTGCGAAGAACAACGACGAA
CTTATCAAAACGTTAGGCAACTTCATGAATCGTGTAATCACGTTTCTGTA
CAAATCGTTCAAAGGGGAGGTACCCGAACTAATACCAAACGACGAAGAAG
ACGAAGCGTTCACAGAGAATGTGAATGTGGAATTGAAAGAATATAAACGA
CTCATGGACGAAGTAAGTTTAAAGGCGGGGTTGAAGAAGGCAATGGCAAT
TGCAAGCATTGGAAACTTGTATCTGCAAAGAAAAGTGCCATGGAATCTTC
TCAAGCAAGGCGATACTCGCACGGCCGGTAGCGCTCTCACGTATGCCGCA
AATCTGGCAGTGCTGGTTACAGTGCTTCTGGAACCGTTTCTGGGAACCAA
GTTTTCAGTGAAGGTATTCTCACAACTTGGGTTGGAGTATAAAGCAGGTG
AGAACAACTTAATTCCAGAACGATTCGAGGTTTCGTATTGGATTAAAGCT
GGAATGAAGACAGGGAAACCGCAAATCTTGTTCACTTCACTCACAAAAGA
CCAACTTGCAGAGTTTAGAAGAAAGTTTAGTGGGGATGCGTCGAACACAG
AACAGAAGGACAAGGACAATGAAAAACGATTCGTTCTGGACTTGAGGGTT
GGAAAGATTGTAGAACTTCGTGAACACGAGGAATCGGAACGGTTGTTCGT
GGGAAGAGTGGACGTTGGAGAAGACGAAGCTCGCACTGTGGTGGCTGGTT
TACGTGATGTATACACTGTTGATGAACTGAGTGGAAGAAAAGTAGTGGTG
GTTTGCAATTTGGCAGCTGCTAACCTGGCTGGTGTTGAGTCTCAAGGTAT
GATCTTGGTGGCAGAAAAGAAAAAAGTGACAAAGGTATTAAGTGTGGATA
ACAGCGTTTCTGTTGGGGATCGAATTGTGGCGCAAAATGCTTGTGTGGGC
GATTTGGAGAGACGCTTGGACCGAAAAGGATTCCAAGCAGCAAGCAAGTT
GCTACGAGTGGGAAAGAATGGGGATATTGTGTTTGATAAGACGCATCGCC
TGGTGATGCAGGGGAATGAACAGTTGGGAGTTAGTTCGCCTGGAGTAGCT
GAGGGTGGAAAGGTGAAGTAG