Ggra6860.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6860.t1
Unique NameGgra6860.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:693816..695276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000017094
PFAMsWD40
Max annot lvl121069|Pythiales
Evalue4.08e-162
EggNOG OGsCOG2319@1|root,KOG0305@2759|Eukaryota,1MGDM@121069|Pythiales
DescriptionWD repeat-containing protein srw1. Source PGD
COG categoryDO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6860Ggra6860Gracilaria gracilis GNS1m malegenetig00000056_pilon 693816..695276 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6860.t1.stop1Ggra6860.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 693816..693818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6860.t1.CDS1Ggra6860.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 693816..695276 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6860.t1.exon1Ggra6860.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 693816..695276 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6860.t1.start1Ggra6860.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 695274..695276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6860.t1Ggra6860.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 693816..695276 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6860.t1 ID=Ggra6860.t1|Name=Ggra6860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=487bp
MLSNTQPASPKTPSPTTSCYSMLLKSELLDTQPCAPPSHLSAPASLPTAP
SRDIVYSRKPMPNPASSQLHPGFEGLKRLPPQSGSQSRSTTHATFSSNTN
IFRFKKPRPASADAAQILSDATSHLYLGERRSNNALLSMAVTPHRTTRKI
SRSPFKVLDAPCLTDDFYLNLIDWGSQNVLAVGLQNCVYLWSACTSKVTT
LCDLQFAGPVCSVAWNQQGTHLAIGTRSGFVQVWDIASKKLVRTMAGHSA
RVGCLAWNSSVLSSGGRDTNIFNRDLRCKEPFIAKLAGHTQEVCGLKWSP
DDTQLASGGNDNKLFVWSAASLGSIGSLSTSTSGAAYNTPLMRFDSHVAA
VKAIAWSPHARGLLASGGGTADRTIRFWNTTTSSALAAVDTGSQVCNLAW
SKNVNEIVSTHGYSQNQIIVWKYPTLSKVVTLMGHSLRVLYLSVSPSGET
IVTGAGDETLRFWNVFPSAKNPRGSSTARPAYRHFG*
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spliced messenger RNA

>Ggra6860.t1 ID=Ggra6860.t1|Name=Ggra6860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000056_pilon:693816..695276- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCAAACACCCAGCCCGCCTCCCCTAAAACCCCCTCTCCGACCAC
ATCATGCTACTCCATGCTGCTCAAGTCCGAGTTGCTGGACACGCAGCCCT
GTGCACCCCCGTCACATCTCTCCGCCCCCGCGTCGCTACCGACCGCCCCC
AGTCGTGATATCGTGTACTCGCGGAAGCCCATGCCAAATCCCGCGTCTTC
GCAACTGCATCCGGGCTTCGAAGGCCTCAAGCGACTTCCTCCACAGAGCG
GGTCGCAATCGCGCTCCACCACCCACGCCACGTTTTCGTCCAACACAAAC
ATCTTCCGCTTCAAAAAGCCCCGACCAGCATCGGCTGACGCTGCGCAAAT
CCTGTCAGACGCCACCTCTCACCTCTATCTCGGTGAACGTCGTTCGAACA
ATGCGCTGCTGTCCATGGCAGTTACCCCGCATCGCACCACCAGAAAGATC
TCAAGATCACCCTTCAAGGTGCTCGATGCCCCATGCCTCACGGATGACTT
TTACTTGAATCTGATTGATTGGGGATCACAAAACGTGCTTGCTGTTGGTC
TACAAAACTGCGTATATCTGTGGTCTGCGTGCACTAGCAAGGTTACTACG
CTGTGCGATTTACAATTCGCCGGACCGGTGTGCTCCGTAGCCTGGAACCA
ACAGGGTACCCATCTTGCGATTGGTACTCGGTCAGGGTTTGTTCAGGTGT
GGGACATTGCGTCCAAGAAACTCGTCAGAACAATGGCCGGTCACTCGGCG
CGCGTCGGCTGTCTTGCGTGGAATTCCTCTGTTCTTAGCTCGGGCGGCCG
CGACACAAACATATTCAACCGCGACTTGCGATGCAAGGAACCCTTCATAG
CAAAATTGGCTGGTCATACCCAGGAGGTGTGCGGGTTGAAATGGTCTCCA
GACGATACACAGCTTGCCTCGGGAGGCAATGACAACAAGTTGTTTGTATG
GAGCGCAGCTAGTTTGGGCAGCATCGGTTCCCTCAGCACGTCAACGAGCG
GAGCGGCATACAACACACCTCTCATGCGATTTGATAGCCATGTTGCTGCG
GTGAAGGCCATTGCATGGTCTCCACATGCGAGAGGTTTGCTTGCGTCCGG
TGGCGGTACAGCTGATCGCACAATACGCTTCTGGAACACTACCACCAGCT
CGGCCCTTGCAGCTGTGGATACCGGATCTCAGGTGTGCAACTTGGCATGG
TCGAAGAACGTGAACGAAATCGTATCGACGCATGGCTACAGTCAAAATCA
AATCATTGTGTGGAAGTATCCCACTTTGTCTAAGGTTGTGACACTCATGG
GGCATTCGCTGAGAGTACTTTATCTTTCTGTTTCCCCATCAGGAGAGACT
ATTGTGACTGGAGCAGGCGATGAAACATTACGATTTTGGAACGTATTCCC
AAGCGCAAAGAATCCGAGAGGGAGTTCGACAGCTCGTCCCGCTTATCGCC
ACTTCGGATGA
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protein sequence of Ggra6860.t1

>Ggra6860.t1 ID=Ggra6860.t1|Name=Ggra6860.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=487bp
MLSNTQPASPKTPSPTTSCYSMLLKSELLDTQPCAPPSHLSAPASLPTAP
SRDIVYSRKPMPNPASSQLHPGFEGLKRLPPQSGSQSRSTTHATFSSNTN
IFRFKKPRPASADAAQILSDATSHLYLGERRSNNALLSMAVTPHRTTRKI
SRSPFKVLDAPCLTDDFYLNLIDWGSQNVLAVGLQNCVYLWSACTSKVTT
LCDLQFAGPVCSVAWNQQGTHLAIGTRSGFVQVWDIASKKLVRTMAGHSA
RVGCLAWNSSVLSSGGRDTNIFNRDLRCKEPFIAKLAGHTQEVCGLKWSP
DDTQLASGGNDNKLFVWSAASLGSIGSLSTSTSGAAYNTPLMRFDSHVAA
VKAIAWSPHARGLLASGGGTADRTIRFWNTTTSSALAAVDTGSQVCNLAW
SKNVNEIVSTHGYSQNQIIVWKYPTLSKVVTLMGHSLRVLYLSVSPSGET
IVTGAGDETLRFWNVFPSAKNPRGSSTARPAYRHFG*
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mRNA from alignment at tig00000056_pilon:693816..695276-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6860.t1 ID=Ggra6860.t1|Name=Ggra6860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000056_pilon:693816..695276- (Gracilaria gracilis GNS1m male)
ATGCTGTCAAACACCCAGCCCGCCTCCCCTAAAACCCCCTCTCCGACCAC
ATCATGCTACTCCATGCTGCTCAAGTCCGAGTTGCTGGACACGCAGCCCT
GTGCACCCCCGTCACATCTCTCCGCCCCCGCGTCGCTACCGACCGCCCCC
AGTCGTGATATCGTGTACTCGCGGAAGCCCATGCCAAATCCCGCGTCTTC
GCAACTGCATCCGGGCTTCGAAGGCCTCAAGCGACTTCCTCCACAGAGCG
GGTCGCAATCGCGCTCCACCACCCACGCCACGTTTTCGTCCAACACAAAC
ATCTTCCGCTTCAAAAAGCCCCGACCAGCATCGGCTGACGCTGCGCAAAT
CCTGTCAGACGCCACCTCTCACCTCTATCTCGGTGAACGTCGTTCGAACA
ATGCGCTGCTGTCCATGGCAGTTACCCCGCATCGCACCACCAGAAAGATC
TCAAGATCACCCTTCAAGGTGCTCGATGCCCCATGCCTCACGGATGACTT
TTACTTGAATCTGATTGATTGGGGATCACAAAACGTGCTTGCTGTTGGTC
TACAAAACTGCGTATATCTGTGGTCTGCGTGCACTAGCAAGGTTACTACG
CTGTGCGATTTACAATTCGCCGGACCGGTGTGCTCCGTAGCCTGGAACCA
ACAGGGTACCCATCTTGCGATTGGTACTCGGTCAGGGTTTGTTCAGGTGT
GGGACATTGCGTCCAAGAAACTCGTCAGAACAATGGCCGGTCACTCGGCG
CGCGTCGGCTGTCTTGCGTGGAATTCCTCTGTTCTTAGCTCGGGCGGCCG
CGACACAAACATATTCAACCGCGACTTGCGATGCAAGGAACCCTTCATAG
CAAAATTGGCTGGTCATACCCAGGAGGTGTGCGGGTTGAAATGGTCTCCA
GACGATACACAGCTTGCCTCGGGAGGCAATGACAACAAGTTGTTTGTATG
GAGCGCAGCTAGTTTGGGCAGCATCGGTTCCCTCAGCACGTCAACGAGCG
GAGCGGCATACAACACACCTCTCATGCGATTTGATAGCCATGTTGCTGCG
GTGAAGGCCATTGCATGGTCTCCACATGCGAGAGGTTTGCTTGCGTCCGG
TGGCGGTACAGCTGATCGCACAATACGCTTCTGGAACACTACCACCAGCT
CGGCCCTTGCAGCTGTGGATACCGGATCTCAGGTGTGCAACTTGGCATGG
TCGAAGAACGTGAACGAAATCGTATCGACGCATGGCTACAGTCAAAATCA
AATCATTGTGTGGAAGTATCCCACTTTGTCTAAGGTTGTGACACTCATGG
GGCATTCGCTGAGAGTACTTTATCTTTCTGTTTCCCCATCAGGAGAGACT
ATTGTGACTGGAGCAGGCGATGAAACATTACGATTTTGGAACGTATTCCC
AAGCGCAAAGAATCCGAGAGGGAGTTCGACAGCTCGTCCCGCTTATCGCC
ACTTCGGATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:693816..695276-

>Ggra6860.t1 ID=Ggra6860.t1|Name=Ggra6860.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00000056_pilon:693816..695276- (Gracilaria gracilis GNS1m male)
ATGCTGTCAAACACCCAGCCCGCCTCCCCTAAAACCCCCTCTCCGACCAC
ATCATGCTACTCCATGCTGCTCAAGTCCGAGTTGCTGGACACGCAGCCCT
GTGCACCCCCGTCACATCTCTCCGCCCCCGCGTCGCTACCGACCGCCCCC
AGTCGTGATATCGTGTACTCGCGGAAGCCCATGCCAAATCCCGCGTCTTC
GCAACTGCATCCGGGCTTCGAAGGCCTCAAGCGACTTCCTCCACAGAGCG
GGTCGCAATCGCGCTCCACCACCCACGCCACGTTTTCGTCCAACACAAAC
ATCTTCCGCTTCAAAAAGCCCCGACCAGCATCGGCTGACGCTGCGCAAAT
CCTGTCAGACGCCACCTCTCACCTCTATCTCGGTGAACGTCGTTCGAACA
ATGCGCTGCTGTCCATGGCAGTTACCCCGCATCGCACCACCAGAAAGATC
TCAAGATCACCCTTCAAGGTGCTCGATGCCCCATGCCTCACGGATGACTT
TTACTTGAATCTGATTGATTGGGGATCACAAAACGTGCTTGCTGTTGGTC
TACAAAACTGCGTATATCTGTGGTCTGCGTGCACTAGCAAGGTTACTACG
CTGTGCGATTTACAATTCGCCGGACCGGTGTGCTCCGTAGCCTGGAACCA
ACAGGGTACCCATCTTGCGATTGGTACTCGGTCAGGGTTTGTTCAGGTGT
GGGACATTGCGTCCAAGAAACTCGTCAGAACAATGGCCGGTCACTCGGCG
CGCGTCGGCTGTCTTGCGTGGAATTCCTCTGTTCTTAGCTCGGGCGGCCG
CGACACAAACATATTCAACCGCGACTTGCGATGCAAGGAACCCTTCATAG
CAAAATTGGCTGGTCATACCCAGGAGGTGTGCGGGTTGAAATGGTCTCCA
GACGATACACAGCTTGCCTCGGGAGGCAATGACAACAAGTTGTTTGTATG
GAGCGCAGCTAGTTTGGGCAGCATCGGTTCCCTCAGCACGTCAACGAGCG
GAGCGGCATACAACACACCTCTCATGCGATTTGATAGCCATGTTGCTGCG
GTGAAGGCCATTGCATGGTCTCCACATGCGAGAGGTTTGCTTGCGTCCGG
TGGCGGTACAGCTGATCGCACAATACGCTTCTGGAACACTACCACCAGCT
CGGCCCTTGCAGCTGTGGATACCGGATCTCAGGTGTGCAACTTGGCATGG
TCGAAGAACGTGAACGAAATCGTATCGACGCATGGCTACAGTCAAAATCA
AATCATTGTGTGGAAGTATCCCACTTTGTCTAAGGTTGTGACACTCATGG
GGCATTCGCTGAGAGTACTTTATCTTTCTGTTTCCCCATCAGGAGAGACT
ATTGTGACTGGAGCAGGCGATGAAACATTACGATTTTGGAACGTATTCCC
AAGCGCAAAGAATCCGAGAGGGAGTTCGACAGCTCGTCCCGCTTATCGCC
ACTTCGGATGA
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