Ggra6874.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6874.t1
Unique NameGgra6874.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length508
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:773239..774892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6874Ggra6874Gracilaria gracilis GNS1m malegenetig00000056_pilon 773239..774892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6874.t1Ggra6874.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 773239..774892 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6874.t1.start1Ggra6874.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 773239..773241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6874.t1.CDS1Ggra6874.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 773239..773398 +
Ggra6874.t1.CDS2Ggra6874.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 773529..774892 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6874.t1.exon1Ggra6874.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 773239..773398 +
Ggra6874.t1.exon2Ggra6874.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 773529..774892 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6874.t1.intron1Ggra6874.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 773399..773528 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6874.t1.stop1Ggra6874.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 774890..774892 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6874.t1 ID=Ggra6874.t1|Name=Ggra6874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=508bp
MVAPSHFSSEIPQLDANRSDTKLVKSETLSLSTKVGCRSPLALDRLCTQL
QQDADALRDVWNASTTCKRVFGLMGKALYGLPTTGVIMEEHMVNGVQTAM
PQDVLQGTLLTLRCLSDGTGMISTVRQVRLSAMAPDELQVALQRLRCCSA
LEKLWFVDAGSGVVIPSELGGRVQVLSILSPRRRTLMGLQEAGCTPRNLE
LFCVDDDAAVQLHSVWQNLTCKCKHVNVTWSGSLVPRYEHTECWYDSIDC
ESFYLPISDEQFEDMQFDSERRYTALGPPYASRVRPRSDGAEEEGRLGWK
PVQLWDWLSNRKWNTQAATPSVDVLGEEGLLTLVVSSRGISNVFLADDAK
LLRQFLREMLSRSEGQVDKLHITVPLFEYNNQNRSLAKLGARMVHLAASA
GISEFVVSSLVFLELAEEPLPATVTSVGVVDDFVVSEFVTRLPMSLAMLA
ANPRSVWMQNMPLREDGTDWQREEWLRVAEKTCRIEERSGLRAMGVRGVL
EQWMRET*
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spliced messenger RNA

>Ggra6874.t1 ID=Ggra6874.t1|Name=Ggra6874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1524bp|location=Sequence derived from alignment at tig00000056_pilon:773239..774892+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCCCGTCGCACTTCAGTTCGGAAATCCCGCAGCTCGACGCGAA
CCGTAGTGACACCAAGCTAGTGAAGAGCGAAACCTTGTCACTTTCCACGA
AAGTAGGTTGTCGTTCGCCACTTGCGCTCGACCGTCTTTGTACGCAACTC
CAACAAGATGCGGACGCTCTACGCGACGTCTGGAACGCATCCACAACATG
CAAGCGAGTATTCGGCTTGATGGGGAAGGCATTGTATGGGCTGCCCACGA
CGGGTGTCATTATGGAAGAACACATGGTGAACGGAGTTCAGACGGCAATG
CCTCAAGATGTTCTACAAGGCACACTGTTGACGCTGCGCTGTTTGAGCGA
TGGCACAGGGATGATTTCGACGGTACGACAGGTGCGATTGAGCGCAATGG
CGCCCGACGAACTGCAGGTGGCGCTCCAGCGGCTGCGGTGTTGTTCTGCG
TTGGAGAAGCTGTGGTTTGTGGACGCGGGAAGCGGCGTAGTAATTCCCAG
TGAGTTAGGTGGCCGTGTGCAGGTACTATCGATCCTATCGCCGCGCCGAC
GAACACTGATGGGGCTGCAAGAGGCAGGATGTACACCGAGGAACCTGGAG
CTCTTTTGTGTGGATGACGACGCGGCTGTGCAGCTACACAGCGTATGGCA
GAATTTGACATGTAAGTGCAAACACGTAAATGTAACGTGGTCCGGTAGCT
TGGTTCCTAGGTATGAACATACCGAATGTTGGTACGATTCTATCGATTGC
GAGAGTTTTTATCTTCCGATCAGCGATGAGCAATTCGAGGACATGCAGTT
CGATTCTGAACGCCGTTACACGGCGTTGGGCCCCCCGTATGCGTCGAGAG
TTCGACCAAGGAGTGACGGTGCTGAGGAAGAAGGACGTCTTGGCTGGAAG
CCTGTTCAGCTGTGGGATTGGCTTTCAAACAGAAAGTGGAATACACAGGC
AGCAACCCCGAGTGTGGATGTACTGGGAGAAGAAGGCTTGCTGACGTTAG
TGGTGAGTTCACGTGGCATTTCTAACGTTTTTCTCGCCGATGATGCCAAG
CTTTTGAGGCAGTTTTTGCGCGAAATGCTGTCCCGCAGTGAAGGTCAAGT
TGACAAACTTCACATAACCGTGCCGCTCTTTGAGTACAATAATCAGAATC
GGAGCTTGGCAAAGCTTGGAGCGCGGATGGTGCATTTGGCTGCTTCCGCG
GGAATTAGCGAGTTCGTGGTGAGCTCGCTAGTGTTCCTTGAGCTGGCGGA
AGAACCGCTGCCGGCGACCGTCACTAGCGTGGGTGTGGTCGACGACTTTG
TGGTGAGTGAATTCGTGACGAGGCTGCCAATGTCACTGGCGATGCTGGCT
GCCAATCCGCGCTCAGTTTGGATGCAAAACATGCCGTTGCGCGAAGACGG
CACGGACTGGCAGAGGGAGGAATGGCTTCGGGTCGCGGAGAAGACTTGTC
GAATTGAAGAGCGATCGGGGCTGCGCGCAATGGGCGTGCGCGGCGTGTTG
GAGCAGTGGATGCGCGAGACGTGA
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protein sequence of Ggra6874.t1

>Ggra6874.t1 ID=Ggra6874.t1|Name=Ggra6874.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=508bp
MVAPSHFSSEIPQLDANRSDTKLVKSETLSLSTKVGCRSPLALDRLCTQL
QQDADALRDVWNASTTCKRVFGLMGKALYGLPTTGVIMEEHMVNGVQTAM
PQDVLQGTLLTLRCLSDGTGMISTVRQVRLSAMAPDELQVALQRLRCCSA
LEKLWFVDAGSGVVIPSELGGRVQVLSILSPRRRTLMGLQEAGCTPRNLE
LFCVDDDAAVQLHSVWQNLTCKCKHVNVTWSGSLVPRYEHTECWYDSIDC
ESFYLPISDEQFEDMQFDSERRYTALGPPYASRVRPRSDGAEEEGRLGWK
PVQLWDWLSNRKWNTQAATPSVDVLGEEGLLTLVVSSRGISNVFLADDAK
LLRQFLREMLSRSEGQVDKLHITVPLFEYNNQNRSLAKLGARMVHLAASA
GISEFVVSSLVFLELAEEPLPATVTSVGVVDDFVVSEFVTRLPMSLAMLA
ANPRSVWMQNMPLREDGTDWQREEWLRVAEKTCRIEERSGLRAMGVRGVL
EQWMRET*
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mRNA from alignment at tig00000056_pilon:773239..774892+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6874.t1 ID=Ggra6874.t1|Name=Ggra6874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1654bp|location=Sequence derived from alignment at tig00000056_pilon:773239..774892+ (Gracilaria gracilis GNS1m male)
ATGGTTGCCCCGTCGCACTTCAGTTCGGAAATCCCGCAGCTCGACGCGAA
CCGTAGTGACACCAAGCTAGTGAAGAGCGAAACCTTGTCACTTTCCACGA
AAGTAGGTTGTCGTTCGCCACTTGCGCTCGACCGTCTTTGTACGCAACTC
CAACAAGATGGTATGTCGCCTTCGATCTTCATCGGCATCCAGGGTCAATC
CGGAACGCGGCACGCGGCTTCTAGATCTTCCTGACGACGTGCTCCTGCGC
GTTTTACGAGCGCTGACCCTTGAAAACTGCCACTTGAAAGCGGACGCTCT
ACGCGACGTCTGGAACGCATCCACAACATGCAAGCGAGTATTCGGCTTGA
TGGGGAAGGCATTGTATGGGCTGCCCACGACGGGTGTCATTATGGAAGAA
CACATGGTGAACGGAGTTCAGACGGCAATGCCTCAAGATGTTCTACAAGG
CACACTGTTGACGCTGCGCTGTTTGAGCGATGGCACAGGGATGATTTCGA
CGGTACGACAGGTGCGATTGAGCGCAATGGCGCCCGACGAACTGCAGGTG
GCGCTCCAGCGGCTGCGGTGTTGTTCTGCGTTGGAGAAGCTGTGGTTTGT
GGACGCGGGAAGCGGCGTAGTAATTCCCAGTGAGTTAGGTGGCCGTGTGC
AGGTACTATCGATCCTATCGCCGCGCCGACGAACACTGATGGGGCTGCAA
GAGGCAGGATGTACACCGAGGAACCTGGAGCTCTTTTGTGTGGATGACGA
CGCGGCTGTGCAGCTACACAGCGTATGGCAGAATTTGACATGTAAGTGCA
AACACGTAAATGTAACGTGGTCCGGTAGCTTGGTTCCTAGGTATGAACAT
ACCGAATGTTGGTACGATTCTATCGATTGCGAGAGTTTTTATCTTCCGAT
CAGCGATGAGCAATTCGAGGACATGCAGTTCGATTCTGAACGCCGTTACA
CGGCGTTGGGCCCCCCGTATGCGTCGAGAGTTCGACCAAGGAGTGACGGT
GCTGAGGAAGAAGGACGTCTTGGCTGGAAGCCTGTTCAGCTGTGGGATTG
GCTTTCAAACAGAAAGTGGAATACACAGGCAGCAACCCCGAGTGTGGATG
TACTGGGAGAAGAAGGCTTGCTGACGTTAGTGGTGAGTTCACGTGGCATT
TCTAACGTTTTTCTCGCCGATGATGCCAAGCTTTTGAGGCAGTTTTTGCG
CGAAATGCTGTCCCGCAGTGAAGGTCAAGTTGACAAACTTCACATAACCG
TGCCGCTCTTTGAGTACAATAATCAGAATCGGAGCTTGGCAAAGCTTGGA
GCGCGGATGGTGCATTTGGCTGCTTCCGCGGGAATTAGCGAGTTCGTGGT
GAGCTCGCTAGTGTTCCTTGAGCTGGCGGAAGAACCGCTGCCGGCGACCG
TCACTAGCGTGGGTGTGGTCGACGACTTTGTGGTGAGTGAATTCGTGACG
AGGCTGCCAATGTCACTGGCGATGCTGGCTGCCAATCCGCGCTCAGTTTG
GATGCAAAACATGCCGTTGCGCGAAGACGGCACGGACTGGCAGAGGGAGG
AATGGCTTCGGGTCGCGGAGAAGACTTGTCGAATTGAAGAGCGATCGGGG
CTGCGCGCAATGGGCGTGCGCGGCGTGTTGGAGCAGTGGATGCGCGAGAC
GTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:773239..774892+

>Ggra6874.t1 ID=Ggra6874.t1|Name=Ggra6874.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1524bp|location=Sequence derived from alignment at tig00000056_pilon:773239..774892+ (Gracilaria gracilis GNS1m male)
ATGGTTGCCCCGTCGCACTTCAGTTCGGAAATCCCGCAGCTCGACGCGAA
CCGTAGTGACACCAAGCTAGTGAAGAGCGAAACCTTGTCACTTTCCACGA
AAGTAGGTTGTCGTTCGCCACTTGCGCTCGACCGTCTTTGTACGCAACTC
CAACAAGATGCGGACGCTCTACGCGACGTCTGGAACGCATCCACAACATG
CAAGCGAGTATTCGGCTTGATGGGGAAGGCATTGTATGGGCTGCCCACGA
CGGGTGTCATTATGGAAGAACACATGGTGAACGGAGTTCAGACGGCAATG
CCTCAAGATGTTCTACAAGGCACACTGTTGACGCTGCGCTGTTTGAGCGA
TGGCACAGGGATGATTTCGACGGTACGACAGGTGCGATTGAGCGCAATGG
CGCCCGACGAACTGCAGGTGGCGCTCCAGCGGCTGCGGTGTTGTTCTGCG
TTGGAGAAGCTGTGGTTTGTGGACGCGGGAAGCGGCGTAGTAATTCCCAG
TGAGTTAGGTGGCCGTGTGCAGGTACTATCGATCCTATCGCCGCGCCGAC
GAACACTGATGGGGCTGCAAGAGGCAGGATGTACACCGAGGAACCTGGAG
CTCTTTTGTGTGGATGACGACGCGGCTGTGCAGCTACACAGCGTATGGCA
GAATTTGACATGTAAGTGCAAACACGTAAATGTAACGTGGTCCGGTAGCT
TGGTTCCTAGGTATGAACATACCGAATGTTGGTACGATTCTATCGATTGC
GAGAGTTTTTATCTTCCGATCAGCGATGAGCAATTCGAGGACATGCAGTT
CGATTCTGAACGCCGTTACACGGCGTTGGGCCCCCCGTATGCGTCGAGAG
TTCGACCAAGGAGTGACGGTGCTGAGGAAGAAGGACGTCTTGGCTGGAAG
CCTGTTCAGCTGTGGGATTGGCTTTCAAACAGAAAGTGGAATACACAGGC
AGCAACCCCGAGTGTGGATGTACTGGGAGAAGAAGGCTTGCTGACGTTAG
TGGTGAGTTCACGTGGCATTTCTAACGTTTTTCTCGCCGATGATGCCAAG
CTTTTGAGGCAGTTTTTGCGCGAAATGCTGTCCCGCAGTGAAGGTCAAGT
TGACAAACTTCACATAACCGTGCCGCTCTTTGAGTACAATAATCAGAATC
GGAGCTTGGCAAAGCTTGGAGCGCGGATGGTGCATTTGGCTGCTTCCGCG
GGAATTAGCGAGTTCGTGGTGAGCTCGCTAGTGTTCCTTGAGCTGGCGGA
AGAACCGCTGCCGGCGACCGTCACTAGCGTGGGTGTGGTCGACGACTTTG
TGGTGAGTGAATTCGTGACGAGGCTGCCAATGTCACTGGCGATGCTGGCT
GCCAATCCGCGCTCAGTTTGGATGCAAAACATGCCGTTGCGCGAAGACGG
CACGGACTGGCAGAGGGAGGAATGGCTTCGGGTCGCGGAGAAGACTTGTC
GAATTGAAGAGCGATCGGGGCTGCGCGCAATGGGCGTGCGCGGCGTGTTG
GAGCAGTGGATGCGCGAGACGTGA
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