Ggra1782.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1782.t1
Unique NameGgra1782.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:613026..614057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707333.1
Preferred nameCHKA
PFAMsCholine_kinase
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00866,ko:K00894,ko:K14156
KEGG ReactionR01021,R01468
KEGG Pathwayko00564,ko01100,ko05231,map00564,map01100,map05231
KEGG ModuleM00090,M00092
GOsGO:0000166,GO:0001505,GO:0003674,GO:0003824,GO:0004103,GO:0004104,GO:0004305,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005938,GO:0006066,GO:0006576,GO:0006580,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006656,GO:0006657,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006869,GO:0007275,GO:0007517,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009308,GO:0009636,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0017076,GO:0019637,GO:0019695,GO:0030554,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033265,GO:0034308,GO:0034641,GO:0035639,GO:0036094,GO:0042133,GO:0042165,GO:0042221,GO:0042439,GO:0042493,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0046983,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0052689,GO:0061061,GO:0065007,GO:0065008,GO:0070405,GO:0071702,GO:0071704,GO:0071944,GO:0090407,GO:0097159,GO:0097164,GO:0097367,GO:0099568,GO:1901160,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1903165,GO:1904681
Evalue2.08e-64
EggNOG OGsCOG0510@1|root,KOG2686@2759|Eukaryota
EC2.7.1.32,2.7.1.82
Descriptioncholine kinase activity
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1782Ggra1782Gracilaria gracilis GNS1m malegenetig00000050_pilon 613026..614057 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1782.t1.start1Ggra1782.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 613026..613028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1782.t1.CDS1Ggra1782.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 613026..614057 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1782.t1.exon1Ggra1782.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 613026..614057 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1782.t1.stop1Ggra1782.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 614055..614057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1782.t1Ggra1782.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 613026..614057 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1782.t1 ID=Ggra1782.t1|Name=Ggra1782.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=344bp
MISMTEPLNNISQTKIEIHNEEDIQNVLPKLVPFLSPPLLIERVSGGITN
TIFKVSQASNDRAKVLLRIFGGADVFTPDQRAEENDIFAQLAKAGIGPAL
YGVFANGRIEQFYDARTITLDEMTTSVVGFGVAKFMARMHSFRPIGIRAE
VRVWSDINAWSKEALRLSEKGAIEGRIDVRRGLDWVEAVRKRLEKLVSPV
VYAHNDLLCGNILVSAQNQVRIVDFEYSSFNYRGFDIANFFSECMGGTID
GRVHPDKCPSLEFKTTFCETYLRERGESVTEGAVHNLVREAEEFELLTHL
YWGFWALVQSGSSNVDFPYIMFAEGRFAEFLKRFNPSGIGKNK*
back to top

spliced messenger RNA

>Ggra1782.t1 ID=Ggra1782.t1|Name=Ggra1782.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000050_pilon:613026..614057+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATCAATGACAGAACCACTGAACAATATATCTCAAACAAAAATTGA
AATTCACAACGAGGAAGATATACAGAACGTGCTCCCGAAACTTGTTCCGT
TCCTTTCACCCCCGTTACTTATCGAACGAGTAAGTGGTGGTATAACAAAT
ACGATCTTCAAAGTATCTCAGGCTTCAAATGACCGGGCGAAGGTCCTTCT
GCGCATCTTTGGTGGTGCAGATGTCTTCACTCCCGATCAACGCGCGGAGG
AGAACGACATATTTGCTCAACTAGCGAAAGCAGGAATAGGCCCTGCTCTA
TACGGTGTCTTTGCCAATGGTCGCATTGAACAATTCTATGACGCTCGTAC
TATAACTCTTGACGAAATGACCACGAGCGTTGTCGGCTTCGGGGTCGCAA
AGTTCATGGCTCGCATGCATAGCTTTCGACCCATTGGTATCAGAGCAGAA
GTTCGCGTCTGGAGTGATATCAATGCATGGTCCAAGGAGGCGCTGAGACT
ATCAGAAAAAGGTGCAATAGAAGGACGCATAGATGTTCGGAGGGGCTTGG
ATTGGGTTGAAGCTGTCCGCAAGCGTTTGGAGAAACTAGTTAGTCCCGTT
GTTTACGCGCACAATGACCTTCTTTGCGGGAACATCTTGGTTTCGGCGCA
GAACCAAGTGAGAATCGTTGACTTCGAGTATAGTAGCTTCAACTACCGTG
GATTTGACATTGCTAACTTTTTCAGCGAATGTATGGGGGGTACCATAGAC
GGAAGGGTGCACCCTGACAAATGTCCGAGTCTAGAGTTCAAGACCACGTT
CTGTGAAACGTATTTGAGGGAACGAGGAGAAAGTGTTACGGAAGGAGCGG
TGCACAATCTTGTTCGGGAAGCAGAAGAATTTGAGCTACTCACGCATCTG
TACTGGGGCTTTTGGGCGTTGGTGCAGAGTGGAAGCTCTAATGTGGACTT
CCCTTATATAATGTTTGCAGAGGGACGGTTTGCGGAGTTTCTAAAACGTT
TTAACCCGAGTGGCATTGGGAAAAACAAGTGA
back to top

protein sequence of Ggra1782.t1

>Ggra1782.t1 ID=Ggra1782.t1|Name=Ggra1782.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=344bp
MISMTEPLNNISQTKIEIHNEEDIQNVLPKLVPFLSPPLLIERVSGGITN
TIFKVSQASNDRAKVLLRIFGGADVFTPDQRAEENDIFAQLAKAGIGPAL
YGVFANGRIEQFYDARTITLDEMTTSVVGFGVAKFMARMHSFRPIGIRAE
VRVWSDINAWSKEALRLSEKGAIEGRIDVRRGLDWVEAVRKRLEKLVSPV
VYAHNDLLCGNILVSAQNQVRIVDFEYSSFNYRGFDIANFFSECMGGTID
GRVHPDKCPSLEFKTTFCETYLRERGESVTEGAVHNLVREAEEFELLTHL
YWGFWALVQSGSSNVDFPYIMFAEGRFAEFLKRFNPSGIGKNK*
back to top

mRNA from alignment at tig00000050_pilon:613026..614057+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1782.t1 ID=Ggra1782.t1|Name=Ggra1782.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000050_pilon:613026..614057+ (Gracilaria gracilis GNS1m male)
ATGATATCAATGACAGAACCACTGAACAATATATCTCAAACAAAAATTGA
AATTCACAACGAGGAAGATATACAGAACGTGCTCCCGAAACTTGTTCCGT
TCCTTTCACCCCCGTTACTTATCGAACGAGTAAGTGGTGGTATAACAAAT
ACGATCTTCAAAGTATCTCAGGCTTCAAATGACCGGGCGAAGGTCCTTCT
GCGCATCTTTGGTGGTGCAGATGTCTTCACTCCCGATCAACGCGCGGAGG
AGAACGACATATTTGCTCAACTAGCGAAAGCAGGAATAGGCCCTGCTCTA
TACGGTGTCTTTGCCAATGGTCGCATTGAACAATTCTATGACGCTCGTAC
TATAACTCTTGACGAAATGACCACGAGCGTTGTCGGCTTCGGGGTCGCAA
AGTTCATGGCTCGCATGCATAGCTTTCGACCCATTGGTATCAGAGCAGAA
GTTCGCGTCTGGAGTGATATCAATGCATGGTCCAAGGAGGCGCTGAGACT
ATCAGAAAAAGGTGCAATAGAAGGACGCATAGATGTTCGGAGGGGCTTGG
ATTGGGTTGAAGCTGTCCGCAAGCGTTTGGAGAAACTAGTTAGTCCCGTT
GTTTACGCGCACAATGACCTTCTTTGCGGGAACATCTTGGTTTCGGCGCA
GAACCAAGTGAGAATCGTTGACTTCGAGTATAGTAGCTTCAACTACCGTG
GATTTGACATTGCTAACTTTTTCAGCGAATGTATGGGGGGTACCATAGAC
GGAAGGGTGCACCCTGACAAATGTCCGAGTCTAGAGTTCAAGACCACGTT
CTGTGAAACGTATTTGAGGGAACGAGGAGAAAGTGTTACGGAAGGAGCGG
TGCACAATCTTGTTCGGGAAGCAGAAGAATTTGAGCTACTCACGCATCTG
TACTGGGGCTTTTGGGCGTTGGTGCAGAGTGGAAGCTCTAATGTGGACTT
CCCTTATATAATGTTTGCAGAGGGACGGTTTGCGGAGTTTCTAAAACGTT
TTAACCCGAGTGGCATTGGGAAAAACAAGTGA
back to top

Coding sequence (CDS) from alignment at tig00000050_pilon:613026..614057+

>Ggra1782.t1 ID=Ggra1782.t1|Name=Ggra1782.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1032bp|location=Sequence derived from alignment at tig00000050_pilon:613026..614057+ (Gracilaria gracilis GNS1m male)
ATGATATCAATGACAGAACCACTGAACAATATATCTCAAACAAAAATTGA
AATTCACAACGAGGAAGATATACAGAACGTGCTCCCGAAACTTGTTCCGT
TCCTTTCACCCCCGTTACTTATCGAACGAGTAAGTGGTGGTATAACAAAT
ACGATCTTCAAAGTATCTCAGGCTTCAAATGACCGGGCGAAGGTCCTTCT
GCGCATCTTTGGTGGTGCAGATGTCTTCACTCCCGATCAACGCGCGGAGG
AGAACGACATATTTGCTCAACTAGCGAAAGCAGGAATAGGCCCTGCTCTA
TACGGTGTCTTTGCCAATGGTCGCATTGAACAATTCTATGACGCTCGTAC
TATAACTCTTGACGAAATGACCACGAGCGTTGTCGGCTTCGGGGTCGCAA
AGTTCATGGCTCGCATGCATAGCTTTCGACCCATTGGTATCAGAGCAGAA
GTTCGCGTCTGGAGTGATATCAATGCATGGTCCAAGGAGGCGCTGAGACT
ATCAGAAAAAGGTGCAATAGAAGGACGCATAGATGTTCGGAGGGGCTTGG
ATTGGGTTGAAGCTGTCCGCAAGCGTTTGGAGAAACTAGTTAGTCCCGTT
GTTTACGCGCACAATGACCTTCTTTGCGGGAACATCTTGGTTTCGGCGCA
GAACCAAGTGAGAATCGTTGACTTCGAGTATAGTAGCTTCAACTACCGTG
GATTTGACATTGCTAACTTTTTCAGCGAATGTATGGGGGGTACCATAGAC
GGAAGGGTGCACCCTGACAAATGTCCGAGTCTAGAGTTCAAGACCACGTT
CTGTGAAACGTATTTGAGGGAACGAGGAGAAAGTGTTACGGAAGGAGCGG
TGCACAATCTTGTTCGGGAAGCAGAAGAATTTGAGCTACTCACGCATCTG
TACTGGGGCTTTTGGGCGTTGGTGCAGAGTGGAAGCTCTAATGTGGACTT
CCCTTATATAATGTTTGCAGAGGGACGGTTTGCGGAGTTTCTAAAACGTT
TTAACCCGAGTGGCATTGGGAAAAACAAGTGA
back to top