Ggra1718.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1718.t1
Unique Name	Ggra1718.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	629

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:456968..458854 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708298.1
PFAMs	Peptidase_S49
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04773
Evalue	1.29e-133
EggNOG OGs	COG0616@1\|root,2QQH5@2759\|Eukaryota
Description	signal peptide processing
COG category	OU
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1718	Ggra1718	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 456968..458854 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1718.t1.start1	Ggra1718.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 456968..456970 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1718.t1.CDS1	Ggra1718.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 456968..458854 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1718.t1.exon1	Ggra1718.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 456968..458854 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1718.t1.stop1	Ggra1718.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 458852..458854 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1718.t1	Ggra1718.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 456968..458854 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:456968..458854+
coding sequence from alignment at tig00000050_pilon:456968..458854+

mRNA sequence

>Ggra1718.t1 ID=Ggra1718.t1|Name=Ggra1718.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=629bp
MDSSPVPFKLPAELPHPPPLSTLEHTMSFTPKSTFRKLASSFRMLRQVRG
RLSKRTVLTVRLTGSLSENIPPPGLPFSGPAKLSLPVLLNALRLAANDPR
IAHLHMRLDPLSIGWGKIFEIRRHLEYFRASGKSITVFLESGGPKEYFLA
MGFAVYVPPEGALGLRGFAASGAFVRGVLDKIGIQPQVERIGKYKSTGDS
IARRDMSAAQREVINAILGDVSEIWMKSACEATGMEQKRLEEFMNRSPWD
MKEYEEMGLVTGIRYEGEIEDALKLKFAKGGFRKEEDVLKKKLNSVDVMR
YARRTSDKLLGLRGRKRIAVIRAVGAITSGKNSSSPLMGPTLGSESLVEL
IRKVRDDKRYVACLLRCDSPGGSALASDIMWSELKKLAKAKPLLASQVDI
AASGGYYLSMASEIISEPLSITGSVGVVTAKPSLEEFYKKLGYVKENISV
GGKYAELLVDDRPFTEEEASYFREGAELAYKNFVSKAAQSRGKTYDEMEE
VAQGRVWTGRQAKERGLVDYLGGFQKAIEILKEKAGIDKDEYVRLEEVRG
TASFGERLGLSMGTNASTELMSCIQQPLCISDIDGDMSRLSPLTKYLLDA
ALSPVSGSVSLLNRFPRVVDAILQNSNL*

spliced messenger RNA

>Ggra1718.t1 ID=Ggra1718.t1|Name=Ggra1718.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00000050_pilon:456968..458854+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGCAGCCCGGTTCCCTTCAAGCTCCCGGCCGAACTCCCGCATCC
ACCGCCGTTATCCACTTTGGAGCACACGATGTCTTTCACACCGAAGTCGA
CCTTTCGCAAACTGGCTTCATCCTTTCGAATGCTCCGACAAGTAAGAGGC
CGGTTATCAAAACGGACGGTCCTCACTGTTCGTCTAACCGGCAGCTTGTC
AGAGAATATCCCTCCTCCCGGTTTACCGTTTTCAGGACCTGCCAAATTGT
CTCTCCCGGTCCTCTTGAACGCACTCCGGCTTGCGGCAAATGATCCACGT
ATCGCTCATTTGCACATGAGGCTAGATCCGCTGAGCATTGGTTGGGGAAA
GATTTTCGAGATTCGCCGACACCTTGAGTACTTTCGTGCCTCAGGCAAGT
CAATAACCGTCTTCTTGGAATCGGGAGGTCCGAAAGAGTACTTCTTGGCA
ATGGGATTTGCAGTGTATGTCCCACCTGAAGGAGCCCTGGGACTGAGAGG
ATTTGCCGCCAGTGGCGCATTTGTCAGGGGTGTATTAGATAAGATTGGCA
TACAACCACAAGTGGAGCGCATTGGTAAGTACAAAAGTACCGGAGATTCT
ATTGCAAGGAGAGACATGTCGGCTGCTCAGCGCGAAGTCATCAATGCTAT
CTTGGGTGATGTATCTGAAATATGGATGAAGAGTGCGTGTGAAGCCACGG
GTATGGAGCAAAAGCGTCTGGAAGAATTTATGAACAGGAGCCCATGGGAT
ATGAAAGAATATGAAGAGATGGGCCTAGTCACTGGCATTCGCTATGAAGG
TGAGATCGAAGATGCGCTAAAGCTGAAGTTCGCAAAAGGTGGGTTCAGGA
AGGAGGAGGACGTGTTGAAGAAGAAATTAAACTCCGTCGATGTAATGCGG
TATGCTCGACGTACCAGCGACAAGCTGCTTGGATTGAGAGGTCGGAAACG
CATTGCAGTTATACGCGCTGTGGGGGCAATCACGAGCGGGAAGAACAGCT
CTTCACCCTTAATGGGACCCACGTTAGGAAGCGAGTCATTGGTCGAGCTT
ATAAGGAAGGTCAGAGACGACAAGCGGTATGTTGCATGCTTGCTGCGATG
TGATTCACCCGGAGGCAGCGCGCTCGCTAGCGATATTATGTGGAGTGAGT
TGAAGAAACTGGCCAAGGCGAAACCACTGCTCGCGAGTCAAGTAGATATT
GCGGCGAGCGGGGGATACTACCTAAGCATGGCAAGCGAGATCATCTCCGA
GCCGTTATCGATAACTGGAAGCGTCGGGGTGGTAACTGCTAAACCGAGTC
TTGAAGAATTTTACAAGAAACTGGGCTACGTGAAAGAAAACATAAGCGTT
GGTGGGAAATACGCAGAGTTGTTGGTGGACGATCGTCCATTCACTGAAGA
AGAAGCTTCTTACTTCCGTGAGGGGGCTGAACTCGCATACAAGAACTTCG
TGTCGAAGGCGGCGCAAAGCAGAGGCAAAACTTACGATGAAATGGAGGAG
GTAGCGCAAGGTAGAGTATGGACTGGTAGACAAGCAAAAGAGAGAGGGCT
TGTTGACTATCTGGGTGGGTTTCAGAAAGCAATAGAGATTTTGAAAGAGA
AGGCAGGAATCGATAAGGACGAATACGTTCGTCTGGAAGAAGTGAGGGGT
ACAGCTTCCTTTGGAGAGAGGTTGGGTCTCAGTATGGGAACCAATGCCAG
TACGGAGTTGATGAGTTGCATACAACAACCGCTTTGCATCTCGGACATTG
ATGGCGACATGTCACGGCTATCGCCTTTGACAAAGTATCTGTTGGATGCA
GCACTGTCACCAGTAAGTGGAAGTGTTTCTCTGTTGAACCGATTCCCAAG
AGTTGTCGATGCCATCTTGCAGAACTCCAATCTTTGA

protein sequence of Ggra1718.t1

>Ggra1718.t1 ID=Ggra1718.t1|Name=Ggra1718.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=629bp
MDSSPVPFKLPAELPHPPPLSTLEHTMSFTPKSTFRKLASSFRMLRQVRG
RLSKRTVLTVRLTGSLSENIPPPGLPFSGPAKLSLPVLLNALRLAANDPR
IAHLHMRLDPLSIGWGKIFEIRRHLEYFRASGKSITVFLESGGPKEYFLA
MGFAVYVPPEGALGLRGFAASGAFVRGVLDKIGIQPQVERIGKYKSTGDS
IARRDMSAAQREVINAILGDVSEIWMKSACEATGMEQKRLEEFMNRSPWD
MKEYEEMGLVTGIRYEGEIEDALKLKFAKGGFRKEEDVLKKKLNSVDVMR
YARRTSDKLLGLRGRKRIAVIRAVGAITSGKNSSSPLMGPTLGSESLVEL
IRKVRDDKRYVACLLRCDSPGGSALASDIMWSELKKLAKAKPLLASQVDI
AASGGYYLSMASEIISEPLSITGSVGVVTAKPSLEEFYKKLGYVKENISV
GGKYAELLVDDRPFTEEEASYFREGAELAYKNFVSKAAQSRGKTYDEMEE
VAQGRVWTGRQAKERGLVDYLGGFQKAIEILKEKAGIDKDEYVRLEEVRG
TASFGERLGLSMGTNASTELMSCIQQPLCISDIDGDMSRLSPLTKYLLDA
ALSPVSGSVSLLNRFPRVVDAILQNSNL*

mRNA from alignment at tig00000050_pilon:456968..458854+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1718.t1 ID=Ggra1718.t1|Name=Ggra1718.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1887bp|location=Sequence derived from alignment at tig00000050_pilon:456968..458854+ (Gracilaria gracilis GNS1m male)
ATGGACAGCAGCCCGGTTCCCTTCAAGCTCCCGGCCGAACTCCCGCATCC
ACCGCCGTTATCCACTTTGGAGCACACGATGTCTTTCACACCGAAGTCGA
CCTTTCGCAAACTGGCTTCATCCTTTCGAATGCTCCGACAAGTAAGAGGC
CGGTTATCAAAACGGACGGTCCTCACTGTTCGTCTAACCGGCAGCTTGTC
AGAGAATATCCCTCCTCCCGGTTTACCGTTTTCAGGACCTGCCAAATTGT
CTCTCCCGGTCCTCTTGAACGCACTCCGGCTTGCGGCAAATGATCCACGT
ATCGCTCATTTGCACATGAGGCTAGATCCGCTGAGCATTGGTTGGGGAAA
GATTTTCGAGATTCGCCGACACCTTGAGTACTTTCGTGCCTCAGGCAAGT
CAATAACCGTCTTCTTGGAATCGGGAGGTCCGAAAGAGTACTTCTTGGCA
ATGGGATTTGCAGTGTATGTCCCACCTGAAGGAGCCCTGGGACTGAGAGG
ATTTGCCGCCAGTGGCGCATTTGTCAGGGGTGTATTAGATAAGATTGGCA
TACAACCACAAGTGGAGCGCATTGGTAAGTACAAAAGTACCGGAGATTCT
ATTGCAAGGAGAGACATGTCGGCTGCTCAGCGCGAAGTCATCAATGCTAT
CTTGGGTGATGTATCTGAAATATGGATGAAGAGTGCGTGTGAAGCCACGG
GTATGGAGCAAAAGCGTCTGGAAGAATTTATGAACAGGAGCCCATGGGAT
ATGAAAGAATATGAAGAGATGGGCCTAGTCACTGGCATTCGCTATGAAGG
TGAGATCGAAGATGCGCTAAAGCTGAAGTTCGCAAAAGGTGGGTTCAGGA
AGGAGGAGGACGTGTTGAAGAAGAAATTAAACTCCGTCGATGTAATGCGG
TATGCTCGACGTACCAGCGACAAGCTGCTTGGATTGAGAGGTCGGAAACG
CATTGCAGTTATACGCGCTGTGGGGGCAATCACGAGCGGGAAGAACAGCT
CTTCACCCTTAATGGGACCCACGTTAGGAAGCGAGTCATTGGTCGAGCTT
ATAAGGAAGGTCAGAGACGACAAGCGGTATGTTGCATGCTTGCTGCGATG
TGATTCACCCGGAGGCAGCGCGCTCGCTAGCGATATTATGTGGAGTGAGT
TGAAGAAACTGGCCAAGGCGAAACCACTGCTCGCGAGTCAAGTAGATATT
GCGGCGAGCGGGGGATACTACCTAAGCATGGCAAGCGAGATCATCTCCGA
GCCGTTATCGATAACTGGAAGCGTCGGGGTGGTAACTGCTAAACCGAGTC
TTGAAGAATTTTACAAGAAACTGGGCTACGTGAAAGAAAACATAAGCGTT
GGTGGGAAATACGCAGAGTTGTTGGTGGACGATCGTCCATTCACTGAAGA
AGAAGCTTCTTACTTCCGTGAGGGGGCTGAACTCGCATACAAGAACTTCG
TGTCGAAGGCGGCGCAAAGCAGAGGCAAAACTTACGATGAAATGGAGGAG
GTAGCGCAAGGTAGAGTATGGACTGGTAGACAAGCAAAAGAGAGAGGGCT
TGTTGACTATCTGGGTGGGTTTCAGAAAGCAATAGAGATTTTGAAAGAGA
AGGCAGGAATCGATAAGGACGAATACGTTCGTCTGGAAGAAGTGAGGGGT
ACAGCTTCCTTTGGAGAGAGGTTGGGTCTCAGTATGGGAACCAATGCCAG
TACGGAGTTGATGAGTTGCATACAACAACCGCTTTGCATCTCGGACATTG
ATGGCGACATGTCACGGCTATCGCCTTTGACAAAGTATCTGTTGGATGCA
GCACTGTCACCAGTAAGTGGAAGTGTTTCTCTGTTGAACCGATTCCCAAG
AGTTGTCGATGCCATCTTGCAGAACTCCAATCTTTGA

Coding sequence (CDS) from alignment at tig00000050_pilon:456968..458854+

>Ggra1718.t1 ID=Ggra1718.t1|Name=Ggra1718.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1887bp|location=Sequence derived from alignment at tig00000050_pilon:456968..458854+ (Gracilaria gracilis GNS1m male)
ATGGACAGCAGCCCGGTTCCCTTCAAGCTCCCGGCCGAACTCCCGCATCC
ACCGCCGTTATCCACTTTGGAGCACACGATGTCTTTCACACCGAAGTCGA
CCTTTCGCAAACTGGCTTCATCCTTTCGAATGCTCCGACAAGTAAGAGGC
CGGTTATCAAAACGGACGGTCCTCACTGTTCGTCTAACCGGCAGCTTGTC
AGAGAATATCCCTCCTCCCGGTTTACCGTTTTCAGGACCTGCCAAATTGT
CTCTCCCGGTCCTCTTGAACGCACTCCGGCTTGCGGCAAATGATCCACGT
ATCGCTCATTTGCACATGAGGCTAGATCCGCTGAGCATTGGTTGGGGAAA
GATTTTCGAGATTCGCCGACACCTTGAGTACTTTCGTGCCTCAGGCAAGT
CAATAACCGTCTTCTTGGAATCGGGAGGTCCGAAAGAGTACTTCTTGGCA
ATGGGATTTGCAGTGTATGTCCCACCTGAAGGAGCCCTGGGACTGAGAGG
ATTTGCCGCCAGTGGCGCATTTGTCAGGGGTGTATTAGATAAGATTGGCA
TACAACCACAAGTGGAGCGCATTGGTAAGTACAAAAGTACCGGAGATTCT
ATTGCAAGGAGAGACATGTCGGCTGCTCAGCGCGAAGTCATCAATGCTAT
CTTGGGTGATGTATCTGAAATATGGATGAAGAGTGCGTGTGAAGCCACGG
GTATGGAGCAAAAGCGTCTGGAAGAATTTATGAACAGGAGCCCATGGGAT
ATGAAAGAATATGAAGAGATGGGCCTAGTCACTGGCATTCGCTATGAAGG
TGAGATCGAAGATGCGCTAAAGCTGAAGTTCGCAAAAGGTGGGTTCAGGA
AGGAGGAGGACGTGTTGAAGAAGAAATTAAACTCCGTCGATGTAATGCGG
TATGCTCGACGTACCAGCGACAAGCTGCTTGGATTGAGAGGTCGGAAACG
CATTGCAGTTATACGCGCTGTGGGGGCAATCACGAGCGGGAAGAACAGCT
CTTCACCCTTAATGGGACCCACGTTAGGAAGCGAGTCATTGGTCGAGCTT
ATAAGGAAGGTCAGAGACGACAAGCGGTATGTTGCATGCTTGCTGCGATG
TGATTCACCCGGAGGCAGCGCGCTCGCTAGCGATATTATGTGGAGTGAGT
TGAAGAAACTGGCCAAGGCGAAACCACTGCTCGCGAGTCAAGTAGATATT
GCGGCGAGCGGGGGATACTACCTAAGCATGGCAAGCGAGATCATCTCCGA
GCCGTTATCGATAACTGGAAGCGTCGGGGTGGTAACTGCTAAACCGAGTC
TTGAAGAATTTTACAAGAAACTGGGCTACGTGAAAGAAAACATAAGCGTT
GGTGGGAAATACGCAGAGTTGTTGGTGGACGATCGTCCATTCACTGAAGA
AGAAGCTTCTTACTTCCGTGAGGGGGCTGAACTCGCATACAAGAACTTCG
TGTCGAAGGCGGCGCAAAGCAGAGGCAAAACTTACGATGAAATGGAGGAG
GTAGCGCAAGGTAGAGTATGGACTGGTAGACAAGCAAAAGAGAGAGGGCT
TGTTGACTATCTGGGTGGGTTTCAGAAAGCAATAGAGATTTTGAAAGAGA
AGGCAGGAATCGATAAGGACGAATACGTTCGTCTGGAAGAAGTGAGGGGT
ACAGCTTCCTTTGGAGAGAGGTTGGGTCTCAGTATGGGAACCAATGCCAG
TACGGAGTTGATGAGTTGCATACAACAACCGCTTTGCATCTCGGACATTG
ATGGCGACATGTCACGGCTATCGCCTTTGACAAAGTATCTGTTGGATGCA
GCACTGTCACCAGTAAGTGGAAGTGTTTCTCTGTTGAACCGATTCCCAAG
AGTTGTCGATGCCATCTTGCAGAACTCCAATCTTTGA