Ggra1770.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1770.t1
Unique NameGgra1770.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:584674..585417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog76114.ebA6196
PFAMsDUF1415
Max annot lvl206389|Rhodocyclales
KEGG koko:K09941
Evalue6.67e-28
EggNOG OGsCOG3310@1|root,COG3310@2|Bacteria,1RDE0@1224|Proteobacteria,2VQ9D@28216|Betaproteobacteria,2KW6Y@206389|Rhodocyclales
DescriptionProtein of unknown function (DUF1415)
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1770Ggra1770Gracilaria gracilis GNS1m malegenetig00000050_pilon 584674..585417 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1770.t1.start1Ggra1770.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 584674..584676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1770.t1.CDS1Ggra1770.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 584674..585417 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1770.t1.exon1Ggra1770.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 584674..585417 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1770.t1.stop1Ggra1770.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 585415..585417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1770.t1Ggra1770.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 584674..585417 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1770.t1 ID=Ggra1770.t1|Name=Ggra1770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=248bp
MLSGFETQGLVGALAFCLPTNAIRIPHALVDNRARCKPFRTKPVFQFRYI
IPTLSVNAIASGRNEQQNEDIVSTRTKSWVKDIVVGLGLCPFAEPAMQSD
GVRYVISRAAHESMVRKVFSDEVKLLMAAEPEQISTTLIVMPEFAESDFL
RFHVLTNSIEEQISEDEDLADSVLIAAFHPDFRYDDTTENDALNFEKRAP
YPIINILRAELLDEYISHGKTHNIPRHNRQVLERLGSEQLKRLYCWD*
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spliced messenger RNA

>Ggra1770.t1 ID=Ggra1770.t1|Name=Ggra1770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000050_pilon:584674..585417+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCCGGATTTGAAACGCAGGGCTTGGTGGGAGCACTAGCGTTCTG
CCTCCCAACAAACGCCATTCGCATTCCCCACGCTCTTGTTGACAACCGCG
CACGTTGCAAGCCATTCAGAACAAAACCAGTGTTTCAATTCAGATACATC
ATTCCGACTTTGTCTGTGAATGCAATTGCATCGGGAAGAAATGAACAGCA
AAACGAGGACATTGTTTCAACTCGCACAAAGTCGTGGGTCAAGGACATAG
TGGTTGGATTGGGTCTATGTCCCTTTGCCGAACCCGCGATGCAATCCGAC
GGCGTTCGATACGTTATTTCTCGAGCTGCACATGAGAGTATGGTACGAAA
AGTATTCTCCGATGAAGTTAAGTTGTTGATGGCTGCAGAGCCGGAGCAAA
TCAGCACGACCCTGATCGTCATGCCCGAGTTCGCAGAGAGTGACTTTTTG
CGTTTCCACGTCTTAACAAATTCAATTGAAGAACAAATATCAGAAGATGA
GGATCTTGCAGATTCTGTTTTGATAGCTGCATTTCATCCAGATTTTCGTT
ATGACGATACGACCGAGAACGACGCGCTCAACTTCGAGAAACGTGCACCA
TATCCAATTATCAACATTCTTCGAGCAGAACTACTTGACGAGTACATATC
ACACGGTAAGACTCACAACATCCCCAGGCACAACAGGCAAGTACTGGAAA
GATTGGGATCAGAACAGCTCAAGAGATTGTATTGTTGGGACTAG
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protein sequence of Ggra1770.t1

>Ggra1770.t1 ID=Ggra1770.t1|Name=Ggra1770.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MLSGFETQGLVGALAFCLPTNAIRIPHALVDNRARCKPFRTKPVFQFRYI
IPTLSVNAIASGRNEQQNEDIVSTRTKSWVKDIVVGLGLCPFAEPAMQSD
GVRYVISRAAHESMVRKVFSDEVKLLMAAEPEQISTTLIVMPEFAESDFL
RFHVLTNSIEEQISEDEDLADSVLIAAFHPDFRYDDTTENDALNFEKRAP
YPIINILRAELLDEYISHGKTHNIPRHNRQVLERLGSEQLKRLYCWD*
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mRNA from alignment at tig00000050_pilon:584674..585417+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1770.t1 ID=Ggra1770.t1|Name=Ggra1770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000050_pilon:584674..585417+ (Gracilaria gracilis GNS1m male)
ATGCTGTCCGGATTTGAAACGCAGGGCTTGGTGGGAGCACTAGCGTTCTG
CCTCCCAACAAACGCCATTCGCATTCCCCACGCTCTTGTTGACAACCGCG
CACGTTGCAAGCCATTCAGAACAAAACCAGTGTTTCAATTCAGATACATC
ATTCCGACTTTGTCTGTGAATGCAATTGCATCGGGAAGAAATGAACAGCA
AAACGAGGACATTGTTTCAACTCGCACAAAGTCGTGGGTCAAGGACATAG
TGGTTGGATTGGGTCTATGTCCCTTTGCCGAACCCGCGATGCAATCCGAC
GGCGTTCGATACGTTATTTCTCGAGCTGCACATGAGAGTATGGTACGAAA
AGTATTCTCCGATGAAGTTAAGTTGTTGATGGCTGCAGAGCCGGAGCAAA
TCAGCACGACCCTGATCGTCATGCCCGAGTTCGCAGAGAGTGACTTTTTG
CGTTTCCACGTCTTAACAAATTCAATTGAAGAACAAATATCAGAAGATGA
GGATCTTGCAGATTCTGTTTTGATAGCTGCATTTCATCCAGATTTTCGTT
ATGACGATACGACCGAGAACGACGCGCTCAACTTCGAGAAACGTGCACCA
TATCCAATTATCAACATTCTTCGAGCAGAACTACTTGACGAGTACATATC
ACACGGTAAGACTCACAACATCCCCAGGCACAACAGGCAAGTACTGGAAA
GATTGGGATCAGAACAGCTCAAGAGATTGTATTGTTGGGACTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:584674..585417+

>Ggra1770.t1 ID=Ggra1770.t1|Name=Ggra1770.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000050_pilon:584674..585417+ (Gracilaria gracilis GNS1m male)
ATGCTGTCCGGATTTGAAACGCAGGGCTTGGTGGGAGCACTAGCGTTCTG
CCTCCCAACAAACGCCATTCGCATTCCCCACGCTCTTGTTGACAACCGCG
CACGTTGCAAGCCATTCAGAACAAAACCAGTGTTTCAATTCAGATACATC
ATTCCGACTTTGTCTGTGAATGCAATTGCATCGGGAAGAAATGAACAGCA
AAACGAGGACATTGTTTCAACTCGCACAAAGTCGTGGGTCAAGGACATAG
TGGTTGGATTGGGTCTATGTCCCTTTGCCGAACCCGCGATGCAATCCGAC
GGCGTTCGATACGTTATTTCTCGAGCTGCACATGAGAGTATGGTACGAAA
AGTATTCTCCGATGAAGTTAAGTTGTTGATGGCTGCAGAGCCGGAGCAAA
TCAGCACGACCCTGATCGTCATGCCCGAGTTCGCAGAGAGTGACTTTTTG
CGTTTCCACGTCTTAACAAATTCAATTGAAGAACAAATATCAGAAGATGA
GGATCTTGCAGATTCTGTTTTGATAGCTGCATTTCATCCAGATTTTCGTT
ATGACGATACGACCGAGAACGACGCGCTCAACTTCGAGAAACGTGCACCA
TATCCAATTATCAACATTCTTCGAGCAGAACTACTTGACGAGTACATATC
ACACGGTAAGACTCACAACATCCCCAGGCACAACAGGCAAGTACTGGAAA
GATTGGGATCAGAACAGCTCAAGAGATTGTATTGTTGGGACTAG
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