Ggra1857.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1857.t1
Unique NameGgra1857.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length804
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:961820..964329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1857Ggra1857Gracilaria gracilis GNS1m malegenetig00000050_pilon 961820..964329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1857.t1Ggra1857.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 961820..964329 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1857.t1.start1Ggra1857.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 961820..961822 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1857.t1.CDS1Ggra1857.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 961820..961897 +
Ggra1857.t1.CDS2Ggra1857.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 961996..964329 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1857.t1.exon1Ggra1857.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 961820..961897 +
Ggra1857.t1.exon2Ggra1857.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 961996..964329 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1857.t1.intron1Ggra1857.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 961898..961995 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1857.t1.stop1Ggra1857.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 964327..964329 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1857.t1 ID=Ggra1857.t1|Name=Ggra1857.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=804bp
MKRVGNRSAQIVRSASRRGKTSSRFQFDITIDRVFGTKPGLNYQVKWSRG
VKVASTKSQLSSKETAKSGLVFNEKLSLLVTLYKEDGKKFDLKDAKLALI
AINQKSQIRTAAKIHFDLSQFAGVPSSSVQKLLKLSDKISVKLTIDSRFL
KSGGKGAGSAASSALSGVSARSSDDFDDDFDDLAVDDIPEPEVVTASSVR
SKRAQPISRQPVPVIKQSASQPSPPAVPAPKPPSPAPSPPSVRAAEPPPV
AAASSARRARPGTVRQEDINAFREVEEQAKLSDLINENKRLSSDLQQANT
ERSSLEQSHKRQIDELNAQMQLHANKVSSAESKRSSSEAAVSDLRANNEE
LNRKISELTSELDSVKRSRDQYQVKSRKLNATEQKCRDLSREVDRLTIAV
SQSASSPTSTKSNSEVEERLSALRKEKEDLEGRIKVHEAHALKVKDAYQS
LTTMYNKVRDDNIKIAKKVEQQEKELRSRPALPVTSRSTSQDDGEEIRSR
LEDALQQVRDEQSSKDSLQSDYDRLSQQNRVLEDRCAKTAKELEDSREET
KGVYASLEELKSQRDAAMKRASHDGKALSAEILKNESVAHAEEEKRHLKE
RFEKEQNRLSNKSEELENAIMVLKEDIEYEKGEKLKAREERDKLREHARQ
LERKTSQAAKQADELHSIRRQLSTQQMRDKDQTDMITDLQGQVKQLQKEL
EHMKDLDKPSSSIEDFGEVLQDLVAAKLALAQAEDDKLNLQFSMKKLRKT
ERMTQQRLAAHASRLEVKLGQATEELEKYRKDKKLGKGLGAREFNELDSD
IDY*
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spliced messenger RNA

>Ggra1857.t1 ID=Ggra1857.t1|Name=Ggra1857.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2412bp|location=Sequence derived from alignment at tig00000050_pilon:961820..964329+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGCGTCGGAAATAGGTCGGCGCAGATTGTGCGGAGTGCGTCGCG
CCGTGGGAAGACTTCCTCCCGCTTTCAGTTTGACATCACTATAGACCGCG
TGTTCGGCACCAAGCCGGGTCTCAATTATCAGGTAAAATGGTCGCGCGGT
GTCAAGGTAGCTTCCACCAAGAGTCAGCTCAGCTCCAAGGAAACAGCCAA
GAGCGGGCTCGTCTTCAACGAGAAGCTCTCACTACTCGTCACACTGTACA
AAGAGGACGGTAAGAAGTTCGACCTCAAGGATGCCAAACTCGCGCTAATC
GCCATCAATCAGAAGAGTCAAATCCGCACGGCCGCCAAGATTCACTTTGA
CCTCAGTCAATTTGCGGGCGTGCCCAGCTCCTCCGTCCAGAAGCTCCTCA
AGCTATCTGACAAAATCTCCGTCAAGCTCACTATCGACTCGCGCTTCCTC
AAGTCCGGCGGAAAGGGTGCGGGCAGCGCCGCCTCGTCTGCGCTCAGTGG
CGTTTCAGCCCGATCGTCCGACGACTTTGATGATGATTTTGACGATCTGG
CCGTTGACGATATCCCTGAACCCGAGGTCGTGACCGCCAGTTCCGTGCGA
AGCAAGAGAGCGCAGCCAATTTCGAGGCAGCCTGTTCCTGTCATCAAGCA
ATCTGCGTCACAACCATCGCCGCCCGCTGTACCTGCTCCAAAGCCACCAT
CCCCTGCGCCGTCGCCCCCGTCCGTACGAGCTGCAGAGCCACCACCTGTT
GCAGCTGCCTCATCTGCGCGCCGCGCACGACCTGGCACTGTACGTCAGGA
GGATATCAATGCTTTTCGCGAGGTAGAAGAACAGGCAAAGCTTTCGGACC
TAATCAACGAAAACAAGAGACTGTCTTCAGATCTGCAACAAGCGAACACA
GAGCGAAGCAGTTTGGAACAATCTCACAAGCGCCAAATAGATGAGCTTAA
TGCGCAGATGCAACTTCACGCGAACAAGGTATCAAGCGCGGAGTCGAAAC
GCTCTTCTTCGGAAGCTGCAGTCAGTGATCTACGAGCAAACAATGAGGAG
CTGAATCGCAAAATCAGTGAGCTCACAAGCGAACTAGATTCTGTCAAGCG
TAGCCGGGATCAGTATCAAGTGAAGAGTAGGAAGCTGAACGCAACCGAGC
AGAAGTGCAGAGATCTATCGCGGGAAGTTGACAGACTCACCATAGCTGTA
AGTCAAAGCGCCAGCTCACCAACCTCTACGAAGAGTAATTCAGAAGTGGA
AGAACGTCTTTCGGCTCTGCGGAAAGAGAAGGAAGATCTTGAAGGGCGGA
TCAAGGTCCACGAAGCACATGCTTTGAAAGTGAAGGACGCGTATCAAAGT
CTCACAACCATGTACAACAAGGTTCGAGATGATAACATAAAGATCGCGAA
GAAGGTCGAGCAGCAAGAGAAGGAGCTGCGGTCTCGTCCAGCACTCCCGG
TGACATCGAGGTCTACCTCGCAAGATGACGGTGAGGAGATACGCTCGCGC
TTGGAGGACGCCTTACAGCAAGTTAGAGATGAGCAGTCTAGCAAAGATTC
GTTGCAATCCGACTATGATCGTCTTAGTCAACAGAATCGCGTTCTTGAAG
ATCGCTGTGCTAAGACAGCGAAGGAACTTGAAGACTCTAGGGAAGAGACA
AAGGGCGTTTACGCGTCCTTGGAAGAGCTAAAATCTCAACGGGATGCTGC
GATGAAGAGGGCCTCCCATGATGGGAAGGCCCTTTCTGCTGAGATTTTGA
AAAATGAGTCTGTTGCTCACGCAGAAGAGGAAAAACGTCACTTGAAGGAA
AGGTTCGAGAAGGAACAAAATCGTCTAAGCAACAAGAGCGAAGAGCTTGA
GAATGCGATTATGGTTTTGAAAGAGGACATAGAATACGAAAAGGGTGAGA
AACTCAAAGCACGGGAGGAGCGTGACAAACTACGAGAGCACGCTCGACAA
TTGGAGAGGAAAACTTCTCAAGCCGCCAAGCAAGCTGATGAATTGCACTC
AATTCGAAGGCAATTGTCCACGCAGCAGATGAGAGACAAGGACCAAACTG
ATATGATCACAGACCTTCAAGGGCAGGTGAAGCAACTTCAAAAAGAATTG
GAACACATGAAGGATTTGGACAAGCCGTCGTCAAGCATTGAAGACTTTGG
CGAAGTGCTACAGGACTTGGTGGCGGCCAAGCTTGCCCTAGCCCAAGCAG
AGGATGATAAGCTTAATCTACAGTTTTCAATGAAAAAGCTCCGGAAGACT
GAGAGAATGACGCAACAACGATTGGCGGCACATGCGTCGCGTTTAGAAGT
AAAGCTGGGTCAAGCGACTGAGGAACTGGAGAAGTATCGGAAAGACAAGA
AGCTCGGAAAAGGGTTAGGTGCGCGAGAGTTTAACGAACTAGATAGCGAC
ATTGACTACTAA
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protein sequence of Ggra1857.t1

>Ggra1857.t1 ID=Ggra1857.t1|Name=Ggra1857.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=804bp
MKRVGNRSAQIVRSASRRGKTSSRFQFDITIDRVFGTKPGLNYQVKWSRG
VKVASTKSQLSSKETAKSGLVFNEKLSLLVTLYKEDGKKFDLKDAKLALI
AINQKSQIRTAAKIHFDLSQFAGVPSSSVQKLLKLSDKISVKLTIDSRFL
KSGGKGAGSAASSALSGVSARSSDDFDDDFDDLAVDDIPEPEVVTASSVR
SKRAQPISRQPVPVIKQSASQPSPPAVPAPKPPSPAPSPPSVRAAEPPPV
AAASSARRARPGTVRQEDINAFREVEEQAKLSDLINENKRLSSDLQQANT
ERSSLEQSHKRQIDELNAQMQLHANKVSSAESKRSSSEAAVSDLRANNEE
LNRKISELTSELDSVKRSRDQYQVKSRKLNATEQKCRDLSREVDRLTIAV
SQSASSPTSTKSNSEVEERLSALRKEKEDLEGRIKVHEAHALKVKDAYQS
LTTMYNKVRDDNIKIAKKVEQQEKELRSRPALPVTSRSTSQDDGEEIRSR
LEDALQQVRDEQSSKDSLQSDYDRLSQQNRVLEDRCAKTAKELEDSREET
KGVYASLEELKSQRDAAMKRASHDGKALSAEILKNESVAHAEEEKRHLKE
RFEKEQNRLSNKSEELENAIMVLKEDIEYEKGEKLKAREERDKLREHARQ
LERKTSQAAKQADELHSIRRQLSTQQMRDKDQTDMITDLQGQVKQLQKEL
EHMKDLDKPSSSIEDFGEVLQDLVAAKLALAQAEDDKLNLQFSMKKLRKT
ERMTQQRLAAHASRLEVKLGQATEELEKYRKDKKLGKGLGAREFNELDSD
IDY*
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mRNA from alignment at tig00000050_pilon:961820..964329+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1857.t1 ID=Ggra1857.t1|Name=Ggra1857.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2510bp|location=Sequence derived from alignment at tig00000050_pilon:961820..964329+ (Gracilaria gracilis GNS1m male)
ATGAAGCGCGTCGGAAATAGGTCGGCGCAGATTGTGCGGAGTGCGTCGCG CCGTGGGAAGACTTCCTCCCGCTTTCAGGTCAGTTGCCATACGTTCACAC TCACCACTTTCGTCGCTGTGTGCTGACTTTTTTTCTTTTTGCCTTTCTAA TACGTTTGGCTGCTCTCCATGCGCAGTTTGACATCACTATAGACCGCGTG TTCGGCACCAAGCCGGGTCTCAATTATCAGGTAAAATGGTCGCGCGGTGT CAAGGTAGCTTCCACCAAGAGTCAGCTCAGCTCCAAGGAAACAGCCAAGA GCGGGCTCGTCTTCAACGAGAAGCTCTCACTACTCGTCACACTGTACAAA GAGGACGGTAAGAAGTTCGACCTCAAGGATGCCAAACTCGCGCTAATCGC CATCAATCAGAAGAGTCAAATCCGCACGGCCGCCAAGATTCACTTTGACC TCAGTCAATTTGCGGGCGTGCCCAGCTCCTCCGTCCAGAAGCTCCTCAAG CTATCTGACAAAATCTCCGTCAAGCTCACTATCGACTCGCGCTTCCTCAA GTCCGGCGGAAAGGGTGCGGGCAGCGCCGCCTCGTCTGCGCTCAGTGGCG TTTCAGCCCGATCGTCCGACGACTTTGATGATGATTTTGACGATCTGGCC GTTGACGATATCCCTGAACCCGAGGTCGTGACCGCCAGTTCCGTGCGAAG CAAGAGAGCGCAGCCAATTTCGAGGCAGCCTGTTCCTGTCATCAAGCAAT CTGCGTCACAACCATCGCCGCCCGCTGTACCTGCTCCAAAGCCACCATCC CCTGCGCCGTCGCCCCCGTCCGTACGAGCTGCAGAGCCACCACCTGTTGC AGCTGCCTCATCTGCGCGCCGCGCACGACCTGGCACTGTACGTCAGGAGG ATATCAATGCTTTTCGCGAGGTAGAAGAACAGGCAAAGCTTTCGGACCTA ATCAACGAAAACAAGAGACTGTCTTCAGATCTGCAACAAGCGAACACAGA GCGAAGCAGTTTGGAACAATCTCACAAGCGCCAAATAGATGAGCTTAATG CGCAGATGCAACTTCACGCGAACAAGGTATCAAGCGCGGAGTCGAAACGC TCTTCTTCGGAAGCTGCAGTCAGTGATCTACGAGCAAACAATGAGGAGCT GAATCGCAAAATCAGTGAGCTCACAAGCGAACTAGATTCTGTCAAGCGTA GCCGGGATCAGTATCAAGTGAAGAGTAGGAAGCTGAACGCAACCGAGCAG AAGTGCAGAGATCTATCGCGGGAAGTTGACAGACTCACCATAGCTGTAAG TCAAAGCGCCAGCTCACCAACCTCTACGAAGAGTAATTCAGAAGTGGAAG AACGTCTTTCGGCTCTGCGGAAAGAGAAGGAAGATCTTGAAGGGCGGATC AAGGTCCACGAAGCACATGCTTTGAAAGTGAAGGACGCGTATCAAAGTCT CACAACCATGTACAACAAGGTTCGAGATGATAACATAAAGATCGCGAAGA AGGTCGAGCAGCAAGAGAAGGAGCTGCGGTCTCGTCCAGCACTCCCGGTG ACATCGAGGTCTACCTCGCAAGATGACGGTGAGGAGATACGCTCGCGCTT GGAGGACGCCTTACAGCAAGTTAGAGATGAGCAGTCTAGCAAAGATTCGT TGCAATCCGACTATGATCGTCTTAGTCAACAGAATCGCGTTCTTGAAGAT CGCTGTGCTAAGACAGCGAAGGAACTTGAAGACTCTAGGGAAGAGACAAA GGGCGTTTACGCGTCCTTGGAAGAGCTAAAATCTCAACGGGATGCTGCGA TGAAGAGGGCCTCCCATGATGGGAAGGCCCTTTCTGCTGAGATTTTGAAA AATGAGTCTGTTGCTCACGCAGAAGAGGAAAAACGTCACTTGAAGGAAAG GTTCGAGAAGGAACAAAATCGTCTAAGCAACAAGAGCGAAGAGCTTGAGA ATGCGATTATGGTTTTGAAAGAGGACATAGAATACGAAAAGGGTGAGAAA CTCAAAGCACGGGAGGAGCGTGACAAACTACGAGAGCACGCTCGACAATT GGAGAGGAAAACTTCTCAAGCCGCCAAGCAAGCTGATGAATTGCACTCAA TTCGAAGGCAATTGTCCACGCAGCAGATGAGAGACAAGGACCAAACTGAT ATGATCACAGACCTTCAAGGGCAGGTGAAGCAACTTCAAAAAGAATTGGA ACACATGAAGGATTTGGACAAGCCGTCGTCAAGCATTGAAGACTTTGGCG AAGTGCTACAGGACTTGGTGGCGGCCAAGCTTGCCCTAGCCCAAGCAGAG GATGATAAGCTTAATCTACAGTTTTCAATGAAAAAGCTCCGGAAGACTGA GAGAATGACGCAACAACGATTGGCGGCACATGCGTCGCGTTTAGAAGTAA AGCTGGGTCAAGCGACTGAGGAACTGGAGAAGTATCGGAAAGACAAGAAG CTCGGAAAAGGGTTAGGTGCGCGAGAGTTTAACGAACTAGATAGCGACAT TGACTACTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:961820..964329+

>Ggra1857.t1 ID=Ggra1857.t1|Name=Ggra1857.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2412bp|location=Sequence derived from alignment at tig00000050_pilon:961820..964329+ (Gracilaria gracilis GNS1m male)
ATGAAGCGCGTCGGAAATAGGTCGGCGCAGATTGTGCGGAGTGCGTCGCG
CCGTGGGAAGACTTCCTCCCGCTTTCAGTTTGACATCACTATAGACCGCG
TGTTCGGCACCAAGCCGGGTCTCAATTATCAGGTAAAATGGTCGCGCGGT
GTCAAGGTAGCTTCCACCAAGAGTCAGCTCAGCTCCAAGGAAACAGCCAA
GAGCGGGCTCGTCTTCAACGAGAAGCTCTCACTACTCGTCACACTGTACA
AAGAGGACGGTAAGAAGTTCGACCTCAAGGATGCCAAACTCGCGCTAATC
GCCATCAATCAGAAGAGTCAAATCCGCACGGCCGCCAAGATTCACTTTGA
CCTCAGTCAATTTGCGGGCGTGCCCAGCTCCTCCGTCCAGAAGCTCCTCA
AGCTATCTGACAAAATCTCCGTCAAGCTCACTATCGACTCGCGCTTCCTC
AAGTCCGGCGGAAAGGGTGCGGGCAGCGCCGCCTCGTCTGCGCTCAGTGG
CGTTTCAGCCCGATCGTCCGACGACTTTGATGATGATTTTGACGATCTGG
CCGTTGACGATATCCCTGAACCCGAGGTCGTGACCGCCAGTTCCGTGCGA
AGCAAGAGAGCGCAGCCAATTTCGAGGCAGCCTGTTCCTGTCATCAAGCA
ATCTGCGTCACAACCATCGCCGCCCGCTGTACCTGCTCCAAAGCCACCAT
CCCCTGCGCCGTCGCCCCCGTCCGTACGAGCTGCAGAGCCACCACCTGTT
GCAGCTGCCTCATCTGCGCGCCGCGCACGACCTGGCACTGTACGTCAGGA
GGATATCAATGCTTTTCGCGAGGTAGAAGAACAGGCAAAGCTTTCGGACC
TAATCAACGAAAACAAGAGACTGTCTTCAGATCTGCAACAAGCGAACACA
GAGCGAAGCAGTTTGGAACAATCTCACAAGCGCCAAATAGATGAGCTTAA
TGCGCAGATGCAACTTCACGCGAACAAGGTATCAAGCGCGGAGTCGAAAC
GCTCTTCTTCGGAAGCTGCAGTCAGTGATCTACGAGCAAACAATGAGGAG
CTGAATCGCAAAATCAGTGAGCTCACAAGCGAACTAGATTCTGTCAAGCG
TAGCCGGGATCAGTATCAAGTGAAGAGTAGGAAGCTGAACGCAACCGAGC
AGAAGTGCAGAGATCTATCGCGGGAAGTTGACAGACTCACCATAGCTGTA
AGTCAAAGCGCCAGCTCACCAACCTCTACGAAGAGTAATTCAGAAGTGGA
AGAACGTCTTTCGGCTCTGCGGAAAGAGAAGGAAGATCTTGAAGGGCGGA
TCAAGGTCCACGAAGCACATGCTTTGAAAGTGAAGGACGCGTATCAAAGT
CTCACAACCATGTACAACAAGGTTCGAGATGATAACATAAAGATCGCGAA
GAAGGTCGAGCAGCAAGAGAAGGAGCTGCGGTCTCGTCCAGCACTCCCGG
TGACATCGAGGTCTACCTCGCAAGATGACGGTGAGGAGATACGCTCGCGC
TTGGAGGACGCCTTACAGCAAGTTAGAGATGAGCAGTCTAGCAAAGATTC
GTTGCAATCCGACTATGATCGTCTTAGTCAACAGAATCGCGTTCTTGAAG
ATCGCTGTGCTAAGACAGCGAAGGAACTTGAAGACTCTAGGGAAGAGACA
AAGGGCGTTTACGCGTCCTTGGAAGAGCTAAAATCTCAACGGGATGCTGC
GATGAAGAGGGCCTCCCATGATGGGAAGGCCCTTTCTGCTGAGATTTTGA
AAAATGAGTCTGTTGCTCACGCAGAAGAGGAAAAACGTCACTTGAAGGAA
AGGTTCGAGAAGGAACAAAATCGTCTAAGCAACAAGAGCGAAGAGCTTGA
GAATGCGATTATGGTTTTGAAAGAGGACATAGAATACGAAAAGGGTGAGA
AACTCAAAGCACGGGAGGAGCGTGACAAACTACGAGAGCACGCTCGACAA
TTGGAGAGGAAAACTTCTCAAGCCGCCAAGCAAGCTGATGAATTGCACTC
AATTCGAAGGCAATTGTCCACGCAGCAGATGAGAGACAAGGACCAAACTG
ATATGATCACAGACCTTCAAGGGCAGGTGAAGCAACTTCAAAAAGAATTG
GAACACATGAAGGATTTGGACAAGCCGTCGTCAAGCATTGAAGACTTTGG
CGAAGTGCTACAGGACTTGGTGGCGGCCAAGCTTGCCCTAGCCCAAGCAG
AGGATGATAAGCTTAATCTACAGTTTTCAATGAAAAAGCTCCGGAAGACT
GAGAGAATGACGCAACAACGATTGGCGGCACATGCGTCGCGTTTAGAAGT
AAAGCTGGGTCAAGCGACTGAGGAACTGGAGAAGTATCGGAAAGACAAGA
AGCTCGGAAAAGGGTTAGGTGCGCGAGAGTTTAACGAACTAGATAGCGAC
ATTGACTACTAA
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