Ggra1837.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1837.t1
Unique NameGgra1837.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length523
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:836953..838521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ27773
PFAMsGround-like,Hint,Kelch_4
Max annot lvl2759|Eukaryota
KEGG koko:K06224,ko:K11990,ko:K16669
KEGG Pathwayko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG ModuleM00678
GOsGO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue6.38e-19
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
BRITEko00000,ko00001,ko00002,ko00536,ko01002,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1837Ggra1837Gracilaria gracilis GNS1m malegenetig00000050_pilon 836953..838521 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1837.t1.stop1Ggra1837.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 836953..836955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1837.t1.CDS1Ggra1837.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 836953..838521 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1837.t1.exon1Ggra1837.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 836953..838521 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1837.t1.start1Ggra1837.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 838519..838521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1837.t1Ggra1837.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 836953..838521 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1837.t1 ID=Ggra1837.t1|Name=Ggra1837.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=523bp
MKCFLGFLIPFMLIGAAYTAVVPRIPIGPVELPVASRLFQPNLLLGMELT
KSSASLTETQCAGSSIVHEVVGFCNKSVDGLDGVSVIPHSAIIHDGVRCG
TGHPLEYMFVIPASKLTDETTAESNGLKNVFTILSSNARAFNAFNVLNDI
DPVHVGIESTRPRICGDKVMFTIGTIFLFIRTRTGASDLNFGFAYLAATE
LGMITVKTDEQLCLYKETRKLAPGQDPLPSPTPSPSGVPKLPNNPLALQN
APDMRQCFPLMGSNSSVPIVVTSPTVSPTPSPSATPSASAQIVVPTRTPT
PSPSASASVSPSVRASPTPSPSSGTEAVIDPTPESEDNDDDVCFPESAKV
ELESGETISIGAVNIGDRVRVNGGAYSEVYFFSHRKHSVIATFLSVYVSS
GAVLTLTPTHYVPVGGRLKAAEQIELGDTLTLTNGTLDTVTKIYTTRKRG
LFNPHTLEGTIVVDGIVASTFTETVVPSAGEALLSPIRLLYKSRLFDSML
KTVLAEGSRLLARMVPSGAPLF*
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spliced messenger RNA

>Ggra1837.t1 ID=Ggra1837.t1|Name=Ggra1837.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000050_pilon:836953..838521- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGCTTCTTGGGATTCTTGATTCCTTTCATGCTCATTGGAGCGGC
GTACACCGCTGTGGTCCCAAGGATTCCAATTGGTCCCGTGGAACTTCCTG
TTGCTTCCCGCTTGTTCCAGCCAAACTTGCTCCTTGGAATGGAGTTAACA
AAATCGTCTGCTAGTCTGACAGAGACTCAATGTGCTGGAAGCTCTATTGT
TCACGAAGTAGTTGGCTTTTGCAACAAGTCAGTCGATGGTTTGGACGGTG
TCTCTGTCATTCCACATTCTGCGATCATACATGATGGTGTAAGATGCGGA
ACTGGACATCCTTTGGAGTACATGTTCGTTATTCCGGCGTCAAAGTTGAC
CGACGAGACAACCGCAGAATCAAACGGCCTTAAGAATGTGTTCACCATTC
TGTCTTCAAACGCGAGGGCATTCAATGCTTTTAATGTTCTGAACGATATT
GACCCTGTTCATGTTGGAATCGAGTCCACTAGGCCTCGTATCTGTGGAGA
CAAGGTTATGTTTACTATTGGAACTATTTTCTTGTTCATTCGCACTAGAA
CAGGCGCCAGTGATTTGAACTTTGGCTTTGCCTATTTAGCCGCAACTGAG
TTGGGTATGATCACCGTGAAGACTGATGAACAGTTGTGTCTCTACAAAGA
AACACGGAAGCTCGCTCCTGGACAGGATCCTTTACCATCGCCCACTCCAT
CACCGTCCGGCGTTCCAAAACTACCCAACAACCCACTAGCGTTGCAAAAT
GCACCAGACATGAGACAATGCTTTCCACTGATGGGGTCCAACAGCAGTGT
GCCAATTGTGGTCACTTCTCCAACTGTATCACCCACACCTTCACCGTCCG
CTACCCCCAGTGCGTCGGCACAGATAGTTGTGCCAACTCGCACTCCGACT
CCGAGCCCAAGTGCCTCGGCGTCGGTCAGCCCTAGCGTGAGGGCAAGCCC
CACGCCGTCCCCTTCGTCTGGAACAGAAGCTGTGATCGATCCAACCCCTG
AGTCTGAAGACAACGACGATGATGTATGCTTCCCTGAGAGCGCAAAAGTG
GAACTGGAGTCAGGGGAAACGATCTCAATCGGCGCTGTTAACATTGGAGA
CCGGGTCCGAGTTAACGGGGGGGCGTATTCTGAGGTATACTTCTTTTCGC
ATAGGAAGCACAGTGTTATTGCAACTTTCTTGAGTGTCTATGTATCATCT
GGGGCAGTATTGACTCTGACACCCACGCATTATGTTCCAGTGGGCGGAAG
ACTGAAAGCAGCTGAGCAGATTGAACTCGGAGATACTTTAACATTGACAA
ACGGGACATTGGACACAGTAACAAAAATTTACACGACAAGGAAGAGAGGA
TTGTTCAACCCTCACACATTGGAAGGAACGATCGTTGTTGACGGCATTGT
GGCATCCACTTTCACGGAAACAGTTGTACCATCTGCTGGTGAAGCACTGC
TGTCGCCCATCAGGTTATTGTACAAGTCGCGGCTATTCGATTCGATGCTC
AAAACGGTGCTTGCTGAAGGGAGTAGGCTTTTGGCGAGGATGGTTCCCAG
CGGCGCTCCTCTATTTTAG
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protein sequence of Ggra1837.t1

>Ggra1837.t1 ID=Ggra1837.t1|Name=Ggra1837.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=523bp
MKCFLGFLIPFMLIGAAYTAVVPRIPIGPVELPVASRLFQPNLLLGMELT
KSSASLTETQCAGSSIVHEVVGFCNKSVDGLDGVSVIPHSAIIHDGVRCG
TGHPLEYMFVIPASKLTDETTAESNGLKNVFTILSSNARAFNAFNVLNDI
DPVHVGIESTRPRICGDKVMFTIGTIFLFIRTRTGASDLNFGFAYLAATE
LGMITVKTDEQLCLYKETRKLAPGQDPLPSPTPSPSGVPKLPNNPLALQN
APDMRQCFPLMGSNSSVPIVVTSPTVSPTPSPSATPSASAQIVVPTRTPT
PSPSASASVSPSVRASPTPSPSSGTEAVIDPTPESEDNDDDVCFPESAKV
ELESGETISIGAVNIGDRVRVNGGAYSEVYFFSHRKHSVIATFLSVYVSS
GAVLTLTPTHYVPVGGRLKAAEQIELGDTLTLTNGTLDTVTKIYTTRKRG
LFNPHTLEGTIVVDGIVASTFTETVVPSAGEALLSPIRLLYKSRLFDSML
KTVLAEGSRLLARMVPSGAPLF*
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mRNA from alignment at tig00000050_pilon:836953..838521-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1837.t1 ID=Ggra1837.t1|Name=Ggra1837.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000050_pilon:836953..838521- (Gracilaria gracilis GNS1m male)
ATGAAGTGCTTCTTGGGATTCTTGATTCCTTTCATGCTCATTGGAGCGGC
GTACACCGCTGTGGTCCCAAGGATTCCAATTGGTCCCGTGGAACTTCCTG
TTGCTTCCCGCTTGTTCCAGCCAAACTTGCTCCTTGGAATGGAGTTAACA
AAATCGTCTGCTAGTCTGACAGAGACTCAATGTGCTGGAAGCTCTATTGT
TCACGAAGTAGTTGGCTTTTGCAACAAGTCAGTCGATGGTTTGGACGGTG
TCTCTGTCATTCCACATTCTGCGATCATACATGATGGTGTAAGATGCGGA
ACTGGACATCCTTTGGAGTACATGTTCGTTATTCCGGCGTCAAAGTTGAC
CGACGAGACAACCGCAGAATCAAACGGCCTTAAGAATGTGTTCACCATTC
TGTCTTCAAACGCGAGGGCATTCAATGCTTTTAATGTTCTGAACGATATT
GACCCTGTTCATGTTGGAATCGAGTCCACTAGGCCTCGTATCTGTGGAGA
CAAGGTTATGTTTACTATTGGAACTATTTTCTTGTTCATTCGCACTAGAA
CAGGCGCCAGTGATTTGAACTTTGGCTTTGCCTATTTAGCCGCAACTGAG
TTGGGTATGATCACCGTGAAGACTGATGAACAGTTGTGTCTCTACAAAGA
AACACGGAAGCTCGCTCCTGGACAGGATCCTTTACCATCGCCCACTCCAT
CACCGTCCGGCGTTCCAAAACTACCCAACAACCCACTAGCGTTGCAAAAT
GCACCAGACATGAGACAATGCTTTCCACTGATGGGGTCCAACAGCAGTGT
GCCAATTGTGGTCACTTCTCCAACTGTATCACCCACACCTTCACCGTCCG
CTACCCCCAGTGCGTCGGCACAGATAGTTGTGCCAACTCGCACTCCGACT
CCGAGCCCAAGTGCCTCGGCGTCGGTCAGCCCTAGCGTGAGGGCAAGCCC
CACGCCGTCCCCTTCGTCTGGAACAGAAGCTGTGATCGATCCAACCCCTG
AGTCTGAAGACAACGACGATGATGTATGCTTCCCTGAGAGCGCAAAAGTG
GAACTGGAGTCAGGGGAAACGATCTCAATCGGCGCTGTTAACATTGGAGA
CCGGGTCCGAGTTAACGGGGGGGCGTATTCTGAGGTATACTTCTTTTCGC
ATAGGAAGCACAGTGTTATTGCAACTTTCTTGAGTGTCTATGTATCATCT
GGGGCAGTATTGACTCTGACACCCACGCATTATGTTCCAGTGGGCGGAAG
ACTGAAAGCAGCTGAGCAGATTGAACTCGGAGATACTTTAACATTGACAA
ACGGGACATTGGACACAGTAACAAAAATTTACACGACAAGGAAGAGAGGA
TTGTTCAACCCTCACACATTGGAAGGAACGATCGTTGTTGACGGCATTGT
GGCATCCACTTTCACGGAAACAGTTGTACCATCTGCTGGTGAAGCACTGC
TGTCGCCCATCAGGTTATTGTACAAGTCGCGGCTATTCGATTCGATGCTC
AAAACGGTGCTTGCTGAAGGGAGTAGGCTTTTGGCGAGGATGGTTCCCAG
CGGCGCTCCTCTATTTTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:836953..838521-

>Ggra1837.t1 ID=Ggra1837.t1|Name=Ggra1837.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1569bp|location=Sequence derived from alignment at tig00000050_pilon:836953..838521- (Gracilaria gracilis GNS1m male)
ATGAAGTGCTTCTTGGGATTCTTGATTCCTTTCATGCTCATTGGAGCGGC
GTACACCGCTGTGGTCCCAAGGATTCCAATTGGTCCCGTGGAACTTCCTG
TTGCTTCCCGCTTGTTCCAGCCAAACTTGCTCCTTGGAATGGAGTTAACA
AAATCGTCTGCTAGTCTGACAGAGACTCAATGTGCTGGAAGCTCTATTGT
TCACGAAGTAGTTGGCTTTTGCAACAAGTCAGTCGATGGTTTGGACGGTG
TCTCTGTCATTCCACATTCTGCGATCATACATGATGGTGTAAGATGCGGA
ACTGGACATCCTTTGGAGTACATGTTCGTTATTCCGGCGTCAAAGTTGAC
CGACGAGACAACCGCAGAATCAAACGGCCTTAAGAATGTGTTCACCATTC
TGTCTTCAAACGCGAGGGCATTCAATGCTTTTAATGTTCTGAACGATATT
GACCCTGTTCATGTTGGAATCGAGTCCACTAGGCCTCGTATCTGTGGAGA
CAAGGTTATGTTTACTATTGGAACTATTTTCTTGTTCATTCGCACTAGAA
CAGGCGCCAGTGATTTGAACTTTGGCTTTGCCTATTTAGCCGCAACTGAG
TTGGGTATGATCACCGTGAAGACTGATGAACAGTTGTGTCTCTACAAAGA
AACACGGAAGCTCGCTCCTGGACAGGATCCTTTACCATCGCCCACTCCAT
CACCGTCCGGCGTTCCAAAACTACCCAACAACCCACTAGCGTTGCAAAAT
GCACCAGACATGAGACAATGCTTTCCACTGATGGGGTCCAACAGCAGTGT
GCCAATTGTGGTCACTTCTCCAACTGTATCACCCACACCTTCACCGTCCG
CTACCCCCAGTGCGTCGGCACAGATAGTTGTGCCAACTCGCACTCCGACT
CCGAGCCCAAGTGCCTCGGCGTCGGTCAGCCCTAGCGTGAGGGCAAGCCC
CACGCCGTCCCCTTCGTCTGGAACAGAAGCTGTGATCGATCCAACCCCTG
AGTCTGAAGACAACGACGATGATGTATGCTTCCCTGAGAGCGCAAAAGTG
GAACTGGAGTCAGGGGAAACGATCTCAATCGGCGCTGTTAACATTGGAGA
CCGGGTCCGAGTTAACGGGGGGGCGTATTCTGAGGTATACTTCTTTTCGC
ATAGGAAGCACAGTGTTATTGCAACTTTCTTGAGTGTCTATGTATCATCT
GGGGCAGTATTGACTCTGACACCCACGCATTATGTTCCAGTGGGCGGAAG
ACTGAAAGCAGCTGAGCAGATTGAACTCGGAGATACTTTAACATTGACAA
ACGGGACATTGGACACAGTAACAAAAATTTACACGACAAGGAAGAGAGGA
TTGTTCAACCCTCACACATTGGAAGGAACGATCGTTGTTGACGGCATTGT
GGCATCCACTTTCACGGAAACAGTTGTACCATCTGCTGGTGAAGCACTGC
TGTCGCCCATCAGGTTATTGTACAAGTCGCGGCTATTCGATTCGATGCTC
AAAACGGTGCTTGCTGAAGGGAGTAGGCTTTTGGCGAGGATGGTTCCCAG
CGGCGCTCCTCTATTTTAG
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