Ggra1742.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1742.t1
Unique Name	Ggra1742.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	261

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:525933..526715 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_024553-tr
Preferred name	NSA2
PFAMs	Ribosomal_S8e
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14842
GOs	GO:0000460,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Evalue	8.96e-129
EggNOG OGs	COG2007@1\|root,KOG3163@2759\|Eukaryota,38B3Y@33154\|Opisthokonta,3BCUR@33208\|Metazoa,3CTDX@33213\|Bilateria
Description	maturation of 5.8S rRNA
COG category	J
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1742	Ggra1742	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 525933..526715 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1742.t1.start1	Ggra1742.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 525933..525935 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1742.t1.CDS1	Ggra1742.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 525933..526715 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1742.t1.exon1	Ggra1742.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 525933..526715 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1742.t1.stop1	Ggra1742.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 526713..526715 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1742.t1	Ggra1742.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 525933..526715 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:525933..526715+
coding sequence from alignment at tig00000050_pilon:525933..526715+

mRNA sequence

>Ggra1742.t1 ID=Ggra1742.t1|Name=Ggra1742.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=261bp
MAQGDYIELHRKRFGVRMDAHERQRKRNARQARRRAEQARTLTGIKAKIF
NKQRFKEKAAMKKAINQHFESDKKTTQEQQVQDGALPAYLLDREQQTRSK
VLSNTLKQKRKEKAGKWDVPLPKVRPIAEDEMFKVIKTGKRQKKQWKRMV
TKVTYVGEAFTRKPPKYERFIRPMGLRFKKAHVTHPELKTTFCLDIIGVK
KNPSSQMFTQLGVITRGTIIEVNVSELGLVTNSGKVVWGKYAQVTNNPEN
DGCINAVLCV*

spliced messenger RNA

>Ggra1742.t1 ID=Ggra1742.t1|Name=Ggra1742.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000050_pilon:525933..526715+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAGGGTGACTACATTGAGCTGCATCGCAAGCGCTTCGGCGTGCG
TATGGATGCCCATGAGCGCCAGCGAAAGCGCAATGCCAGACAAGCCCGCA
GACGCGCCGAACAAGCTCGCACTCTGACAGGAATCAAGGCGAAGATATTT
AACAAGCAGAGGTTCAAGGAGAAGGCGGCGATGAAGAAGGCAATCAACCA
ACACTTTGAAAGCGACAAGAAGACCACTCAAGAACAACAAGTACAAGATG
GTGCATTGCCCGCATACCTGCTGGACCGTGAGCAACAAACGCGTTCTAAG
GTGCTTAGCAATACTCTGAAACAGAAACGAAAGGAGAAGGCTGGAAAGTG
GGATGTGCCACTTCCGAAGGTTCGACCGATTGCTGAGGATGAGATGTTCA
AGGTTATCAAAACTGGAAAGCGTCAGAAAAAGCAATGGAAGCGAATGGTG
ACAAAGGTGACATACGTCGGAGAGGCGTTTACGAGAAAACCTCCAAAATA
CGAGCGCTTTATTCGACCGATGGGTCTGCGATTCAAGAAGGCGCACGTCA
CTCACCCAGAGCTTAAGACGACTTTTTGCCTCGACATCATCGGTGTGAAG
AAGAATCCTAGTAGTCAGATGTTCACTCAACTGGGGGTTATTACTCGAGG
TACGATTATTGAAGTGAACGTTTCTGAGCTAGGTTTGGTCACCAACTCTG
GAAAGGTTGTGTGGGGAAAGTATGCACAGGTTACAAACAACCCAGAGAAT
GATGGATGCATCAATGCTGTGCTTTGCGTCTAG

protein sequence of Ggra1742.t1

>Ggra1742.t1 ID=Ggra1742.t1|Name=Ggra1742.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=261bp
MAQGDYIELHRKRFGVRMDAHERQRKRNARQARRRAEQARTLTGIKAKIF
NKQRFKEKAAMKKAINQHFESDKKTTQEQQVQDGALPAYLLDREQQTRSK
VLSNTLKQKRKEKAGKWDVPLPKVRPIAEDEMFKVIKTGKRQKKQWKRMV
TKVTYVGEAFTRKPPKYERFIRPMGLRFKKAHVTHPELKTTFCLDIIGVK
KNPSSQMFTQLGVITRGTIIEVNVSELGLVTNSGKVVWGKYAQVTNNPEN
DGCINAVLCV*

mRNA from alignment at tig00000050_pilon:525933..526715+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1742.t1 ID=Ggra1742.t1|Name=Ggra1742.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000050_pilon:525933..526715+ (Gracilaria gracilis GNS1m male)
ATGGCTCAGGGTGACTACATTGAGCTGCATCGCAAGCGCTTCGGCGTGCG
TATGGATGCCCATGAGCGCCAGCGAAAGCGCAATGCCAGACAAGCCCGCA
GACGCGCCGAACAAGCTCGCACTCTGACAGGAATCAAGGCGAAGATATTT
AACAAGCAGAGGTTCAAGGAGAAGGCGGCGATGAAGAAGGCAATCAACCA
ACACTTTGAAAGCGACAAGAAGACCACTCAAGAACAACAAGTACAAGATG
GTGCATTGCCCGCATACCTGCTGGACCGTGAGCAACAAACGCGTTCTAAG
GTGCTTAGCAATACTCTGAAACAGAAACGAAAGGAGAAGGCTGGAAAGTG
GGATGTGCCACTTCCGAAGGTTCGACCGATTGCTGAGGATGAGATGTTCA
AGGTTATCAAAACTGGAAAGCGTCAGAAAAAGCAATGGAAGCGAATGGTG
ACAAAGGTGACATACGTCGGAGAGGCGTTTACGAGAAAACCTCCAAAATA
CGAGCGCTTTATTCGACCGATGGGTCTGCGATTCAAGAAGGCGCACGTCA
CTCACCCAGAGCTTAAGACGACTTTTTGCCTCGACATCATCGGTGTGAAG
AAGAATCCTAGTAGTCAGATGTTCACTCAACTGGGGGTTATTACTCGAGG
TACGATTATTGAAGTGAACGTTTCTGAGCTAGGTTTGGTCACCAACTCTG
GAAAGGTTGTGTGGGGAAAGTATGCACAGGTTACAAACAACCCAGAGAAT
GATGGATGCATCAATGCTGTGCTTTGCGTCTAG

Coding sequence (CDS) from alignment at tig00000050_pilon:525933..526715+

>Ggra1742.t1 ID=Ggra1742.t1|Name=Ggra1742.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=783bp|location=Sequence derived from alignment at tig00000050_pilon:525933..526715+ (Gracilaria gracilis GNS1m male)
ATGGCTCAGGGTGACTACATTGAGCTGCATCGCAAGCGCTTCGGCGTGCG
TATGGATGCCCATGAGCGCCAGCGAAAGCGCAATGCCAGACAAGCCCGCA
GACGCGCCGAACAAGCTCGCACTCTGACAGGAATCAAGGCGAAGATATTT
AACAAGCAGAGGTTCAAGGAGAAGGCGGCGATGAAGAAGGCAATCAACCA
ACACTTTGAAAGCGACAAGAAGACCACTCAAGAACAACAAGTACAAGATG
GTGCATTGCCCGCATACCTGCTGGACCGTGAGCAACAAACGCGTTCTAAG
GTGCTTAGCAATACTCTGAAACAGAAACGAAAGGAGAAGGCTGGAAAGTG
GGATGTGCCACTTCCGAAGGTTCGACCGATTGCTGAGGATGAGATGTTCA
AGGTTATCAAAACTGGAAAGCGTCAGAAAAAGCAATGGAAGCGAATGGTG
ACAAAGGTGACATACGTCGGAGAGGCGTTTACGAGAAAACCTCCAAAATA
CGAGCGCTTTATTCGACCGATGGGTCTGCGATTCAAGAAGGCGCACGTCA
CTCACCCAGAGCTTAAGACGACTTTTTGCCTCGACATCATCGGTGTGAAG
AAGAATCCTAGTAGTCAGATGTTCACTCAACTGGGGGTTATTACTCGAGG
TACGATTATTGAAGTGAACGTTTCTGAGCTAGGTTTGGTCACCAACTCTG
GAAAGGTTGTGTGGGGAAAGTATGCACAGGTTACAAACAACCCAGAGAAT
GATGGATGCATCAATGCTGTGCTTTGCGTCTAG