Ggra1791.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1791.t1
Unique NameGgra1791.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:637304..641837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1791Ggra1791Gracilaria gracilis GNS1m malegenetig00000050_pilon 637304..641837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1791.t1Ggra1791.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 637304..641837 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1791.t1.stop1Ggra1791.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 637304..637306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1791.t1.CDS1Ggra1791.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 637304..637379 -
Ggra1791.t1.CDS2Ggra1791.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 637565..637601 -
Ggra1791.t1.CDS3Ggra1791.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 640877..641837 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1791.t1.exon1Ggra1791.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 637304..637379 -
Ggra1791.t1.exon2Ggra1791.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 637565..637601 -
Ggra1791.t1.exon3Ggra1791.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 640877..641837 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1791.t1.intron1Ggra1791.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 637380..637564 -
Ggra1791.t1.intron2Ggra1791.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 637602..640876 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1791.t1.start1Ggra1791.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 641835..641837 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1791.t1 ID=Ggra1791.t1|Name=Ggra1791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=358bp
MAMNDHSIEEHLGVWADFVSFVLLCGAIATQGGIDPRRSVWGRSPVRNVL
NTLFVGLNIIFSAGRFIAEGVWVETGPREFLLISIIYSARWLWLYAAITK
SGSRAARAFEVALELRRLKIIRLGYSTSPTRKKKPELVIRRGARVVSGKH
YWRGVEEYVKRSERKETYKVRLVEKELHSDELDEIGTVDFKTKLEANGRL
RDTLFKKFYDLLLVVDQVNKDIVLDYSKLLGKYGELSETRQPERVGATDR
SEIGNVARRVASDACYYIWNPHGEFRTKDQVDLINDSVERAAGVYMGVPD
MGRDEMGREDRPVVCQEKDRNLSLSCALFPAYNNVFHKTKLRNIVFIPLS
YSEVDED*
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spliced messenger RNA

>Ggra1791.t1 ID=Ggra1791.t1|Name=Ggra1791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000050_pilon:637304..641837- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATGAACGATCACTCTATCGAAGAACATTTGGGAGTGTGGGCCGA
TTTTGTATCTTTTGTACTCCTATGTGGTGCAATTGCCACTCAGGGTGGAA
TCGATCCACGGCGAAGCGTTTGGGGCCGCAGCCCCGTTCGCAACGTACTG
AACACGCTCTTTGTGGGTTTGAATATCATCTTCTCTGCCGGTCGATTCAT
CGCTGAAGGGGTTTGGGTTGAGACAGGTCCTCGTGAATTCTTGCTCATCT
CGATTATTTATTCAGCGCGGTGGTTGTGGTTGTACGCAGCAATTACCAAG
TCCGGTTCTCGCGCTGCTCGTGCTTTCGAAGTTGCTCTCGAATTACGCAG
ACTCAAGATTATACGTCTCGGATATTCGACTAGTCCAACGAGAAAAAAGA
AGCCAGAATTGGTCATACGCCGAGGGGCTAGGGTAGTTAGCGGGAAGCAT
TATTGGAGGGGTGTGGAGGAGTATGTCAAGCGTAGTGAACGAAAGGAAAC
CTATAAGGTTCGCTTGGTTGAGAAGGAACTTCATTCTGATGAGTTGGACG
AAATCGGTACTGTTGATTTCAAGACAAAGCTAGAAGCGAACGGCAGACTA
AGGGATACCCTGTTCAAGAAGTTTTATGATCTACTGCTGGTTGTCGACCA
AGTGAACAAAGATATAGTTCTGGACTATTCAAAGCTGCTCGGAAAGTACG
GAGAACTTTCCGAGACACGTCAACCTGAACGAGTTGGGGCTACAGACCGT
TCGGAAATAGGCAACGTTGCAAGGCGTGTCGCGTCCGATGCATGCTATTA
TATCTGGAACCCACATGGTGAATTCCGTACTAAAGACCAAGTGGATCTTA
TAAATGACAGTGTTGAGAGAGCGGCCGGTGTGTATATGGGCGTTCCAGAT
ATGGGACGTGATGAAATGGGTCGCGAAGATCGTCCCGTTGTGTGCCAAGA
AAAGGATAGGAATTTGTCGTTAAGCTGTGCCTTGTTTCCGGCATACAATA
ACGTGTTTCATAAAACTAAGCTACGAAACATAGTTTTCATTCCACTTTCA
TACTCTGAGGTAGATGAAGACTAA
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protein sequence of Ggra1791.t1

>Ggra1791.t1 ID=Ggra1791.t1|Name=Ggra1791.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=358bp
MAMNDHSIEEHLGVWADFVSFVLLCGAIATQGGIDPRRSVWGRSPVRNVL
NTLFVGLNIIFSAGRFIAEGVWVETGPREFLLISIIYSARWLWLYAAITK
SGSRAARAFEVALELRRLKIIRLGYSTSPTRKKKPELVIRRGARVVSGKH
YWRGVEEYVKRSERKETYKVRLVEKELHSDELDEIGTVDFKTKLEANGRL
RDTLFKKFYDLLLVVDQVNKDIVLDYSKLLGKYGELSETRQPERVGATDR
SEIGNVARRVASDACYYIWNPHGEFRTKDQVDLINDSVERAAGVYMGVPD
MGRDEMGREDRPVVCQEKDRNLSLSCALFPAYNNVFHKTKLRNIVFIPLS
YSEVDED*
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mRNA from alignment at tig00000050_pilon:637304..641837-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1791.t1 ID=Ggra1791.t1|Name=Ggra1791.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4534bp|location=Sequence derived from alignment at tig00000050_pilon:637304..641837- (Gracilaria gracilis GNS1m male)
ATGGCCATGAACGATCACTCTATCGAAGAACATTTGGGAGTGTGGGCCGA
TTTTGTATCTTTTGTACTCCTATGTGGTGCAATTGCCACTCAGGGTGGAA
TCGATCCACGGCGAAGCGTTTGGGGCCGCAGCCCCGTTCGCAACGTACTG
AACACGCTCTTTGTGGGTTTGAATATCATCTTCTCTGCCGGTCGATTCAT
CGCTGAAGGGGTTTGGGTTGAGACAGGTCCTCGTGAATTCTTGCTCATCT
CGATTATTTATTCAGCGCGGTGGTTGTGGTTGTACGCAGCAATTACCAAG
TCCGGTTCTCGCGCTGCTCGTGCTTTCGAAGTTGCTCTCGAATTACGCAG
ACTCAAGATTATACGTCTCGGATATTCGACTAGTCCAACGAGAAAAAAGA
AGCCAGAATTGGTCATACGCCGAGGGGCTAGGGTAGTTAGCGGGAAGCAT
TATTGGAGGGGTGTGGAGGAGTATGTCAAGCGTAGTGAACGAAAGGAAAC
CTATAAGGTTCGCTTGGTTGAGAAGGAACTTCATTCTGATGAGTTGGACG
AAATCGGTACTGTTGATTTCAAGACAAAGCTAGAAGCGAACGGCAGACTA
AGGGATACCCTGTTCAAGAAGTTTTATGATCTACTGCTGGTTGTCGACCA
AGTGAACAAAGATATAGTTCTGGACTATTCAAAGCTGCTCGGAAAGTACG
GAGAACTTTCCGAGACACGTCAACCTGAACGAGTTGGGGCTACAGACCGT
TCGGAAATAGGCAACGTTGCAAGGCGTGTCGCGTCCGATGCATGCTATTA
TATCTGGAACCCACATGGTGAATTCCGTACTAAAGACCAAGTGGATCTTA
TAAATGACAGTGTTGAGAGAGCGGCCGGTGTGTATATGGGCGTTCCAGAT
ATGGGACGTGATGAAATGGGTCGCGAAGATCGTCCCGTTGTGTGCCAAGA
AAAGGATAGGAGTAATTGTGATAGCCCTGCTCACAGAAAAGCGGAAGCAC
TTCCCGTCTAAAACTACAAGGGATTGTAATGATCTTATCATTCCATGAAG
AAGCTATTTTTTCTCCAGCCGGTATTGTAAAAGATCATTTGTAAGATCTT
GTTTCAAGAACACCTCGAAAGCATTTAAGGCTATCGTTCCTATCCTTTGA
AGTCAGAATGAACCAGGCTATGCTCCTGTTAGCAGTAGTAGAAGTAAGTC
TATGCTCCTGTTGGCACTAGTAGAAGTAAGTCTGTTACAAAGATTTCATT
GGTTAGGAACGTTGAATTGAATCTTTTGCAACAACAACAATATCCAACTA
CCCCTGGTTACCGTGTAAAGTTGGGCAGCCAAACTGATGTTCATGGCGAA
GGGGAAGGAAACTCAAATAGCGCACGAGAGGCGCCACTTCGGGCTTTCTC
TCTCTGGCTTACCCTCACTGTCCCCTTCAGGTGTGACGGCGCATCGTCGG
CATTGTACGTTGAGCTGAGCTTTGGATTGCTCCAACGTGGCATGTGAAGA
AGCTCTATGCCCTTGGGAGCAATAGAACTTGCAAAGAGCCCTGCCAACAT
TGCCCTCCTTTTTCGGTCCAGTTGGCGGTGCCAACCCTTTTCAAGTTCGG
AACGTGCTCCGGACCAGGGAGATGCAGGAAATCGTGTACCTGTATCCCTC
TAATTACGTCTGTTCGGCTGGTTCATTGTCCTTCATGCGAAACATCATGT
GTTGTTTCTCAAACACAGAGACACAAAGATCCTTACTGCACAAAGCATTA
CTTTGCGATCAATCGAACACACAAGCACATTTCAGATATACTACTCAACC
TCCATCCATTCATACGTACAGCGAGCCCCCTCAATCTCATAAGCCAGGTC
CAACAACTCATGCACAATGCTTTCAACCTCCGGAAAGGAAAAGTGTCCCT
CAACTGTAATCACAAGTGTGCATCTTGTAATGTAAATGCTCATCACCATT
TCATCCACATGCACCCAATACCGCCGGTCAGAGTCAAAGGGATGAGATCC
TTTTAATTTTGCATACGTGAACGAAGACTTGAGTACAATTTGGTGACTAA
TGCCCTCAGTTCGCCATGAAGAAGACGTTTGCCACTCCTTACCATCCTCG
CGGCTCACAATGATGCGCTGCCAGTTTTGGTTTGTAACATTTTCCCATCT
CCAAGTGGTTGGATCAAGAGTAAACTGTTCAGTATTTCTTAGCATTCTTC
CGGTACCAAATCTTCCTTCCTTCACGACAATGCTTCCACTTGCCTACACG
GAGGCAACTACCATATTCAGCCATCCAGGATCATCACCTGAGCAGTTCAG
TCTCTCAATTTTTTTTGCTGTCCACATCCAGCTGCAAAACCTGAAGCTCT
TCCTTCAAACGGCGCACAAGTCGCTTCTGAGGCTGAAGAATGGACCAGTC
CCTTCGAGAAGGAAGACGGCAGTGCAGGGGGAAGCTCAAGGCGCGAATAG
CAATGTGTGTACTCAATGTACCAATGCGACCAATAACCCATCGCGGGGCA
CCGAGCCCGTTTCGAAAATTTAATGACTTGGTCGACAATCGAGGACCTAC
GCGCCTGGTATCTACTGTTGGTACCGTTGGTACCGTTGTAATAACGGTAC
GCAAGCTTCTGACAAAATGTGCGAGTGCGTCATGATCATATCGCACAGCA
ATATTGCCGTGGTTCTTCGCCTCTTTGATAGCAGTGGCACATCATCATGA
TGTCATGATGCTCTTGCCCGCAAGGCTTTGAATTTAGCTAAAGGAAAAGT
ATCTAAATACTGACCCACGTCATCTTTTGCCGTTGGCGCCCTAAATAGTT
TTGACAGCTGATTTGCCGTACAATTTGTACTTGTTTGTGAGAAAGGTCTA
TTGTGCAACGAACAATGATTTTGCTCGCCTGGAGGCAGAGTGGTATATAG
CCCTGATGGGTACCCAGAGTGACAACCACAGCCTGGCGGTTCAAAGCAGG
AGACGACAGCGAAGCCGAAAAAGGTCATCGTGTTAATGCAAGCATGGAAT
TGTGGGTACAAGCTTTGAAAATATCGGCTGGTGTTCTTGTACATGATCCG
ATCTTCCCAAAATTCGATAGCTGTGCTTGCGTGCATTTGCGGCTTTCGAG
TTCCATTCCATGCATCTACAGCACGTATAAATTACGAAGGTACGTGTACG
AACGGTACCGTTGCAAAATCCGATAACATCAACCCGATTTAACACACATA
TGTAGCTCTCTAGAGGGCCACGTAGACAAACACAGCTGTCTGTTCCAACA
GAGCATATAGCAACCAAGAGAGTTTTGTCTGAAGCAGTGCTCCACATTGA
GGTCCCCTTCTCCTTCTGTGCCTTCTCTCCTTCGCATTTAACAACAGCCC
ACCAGCATACTTCGTTCCACTGCGATGGCCTCATAGCTCATTGCCGACAC
AAATATTTGCTCCCAGCATGTGGCCGCAAACACAACTCCACCCCTCTCTG
TGGCTTCTCTCCCTGCTGCTCTGCATGAGCGCTACCTCATCTTCAATGCC
CGCTGTTTCCCGCCAGACAACCTGCGTTTCAAACCCTTCTATCTGCACTT
CTTCCCAGGTTTGCGTGGCAGGGAGCCATGGCCGTCCTGACCTCTGCATG
CGAGGTCGCACTGCAGGAGAGCATTGCAGCGACAACGATTTTGCTTCGCA
ATGTCTACCCCCACTCAGGTGCGTCAACCATCGATGTGGCACCCGAATCG
CACAAAAAGGTCAAACATGCTCTGGTAGCGGTCAGGTTTGTGATCGTAAT
TTGGTGTGCCACCAAGGTCGCTGCCACGAGAAAAATGGCGACGAAAACGC
TCTCTGTAACCAGCAATCCTTCCGCCTGTGCAAGACCGGTCTCATTTGCA
CTGGACCAACGCGCTTAGAACGATGTATGAAATCTGTGTCCATGGGTGGA
CCATGTGCGTTTCCGTATTGGAATTGCCAGACAGGATTACAATGTATTCG
AAACGAATGCCGCCGCGAGGCGCTGCAGATTTTGGATACCTGTATCCAAT
CGTCAGACTGCCAGTCTCCATTGTTCTGTGCCCTCGATGAAGCGGGTAGT
GCTGGAAAGTGCGTGCACGTGAGCACTGAAGGTAGTTTCTGCAGTGTCAC
ATCCAGGGACGGGTTCCGTGACTTTAGTAGGAGCGCGTGTGCTCCAGGAC
TCACTTGCAAGAGCGTTCCAAGCTCGGTACATCCGGGGGGCTCCTTGTGC
TCATCGTAAACTGGAACTGTACTTGCTTGAATACAGATTTGTCGTTAAGC
TGTGCCTTGTTTCCGGCATACAAGTAAGTTTACTTGTAAACACATCGTTT
TATCTTCACACTCTGGTTGCCCTCACGATGTAACCTCATTGTGTTGCACC
ACCTCGTAAAGTTATAATGTGAAGTTGGAGATTTTGACAATTGACTTTAT
TCATTCTTCTCTTTTGCTCTTGTGAAATATATACCGGTGCTCTTTGAAAT
TCATGAAGTAACGTGTTTCATAAAACTAAGCTACGAAACATAGTTTTCAT
TCCACTTTCATACTCTGAGGTAGATGAAGACTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:637304..641837-

>Ggra1791.t1 ID=Ggra1791.t1|Name=Ggra1791.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000050_pilon:637304..641837- (Gracilaria gracilis GNS1m male)
ATGGCCATGAACGATCACTCTATCGAAGAACATTTGGGAGTGTGGGCCGA
TTTTGTATCTTTTGTACTCCTATGTGGTGCAATTGCCACTCAGGGTGGAA
TCGATCCACGGCGAAGCGTTTGGGGCCGCAGCCCCGTTCGCAACGTACTG
AACACGCTCTTTGTGGGTTTGAATATCATCTTCTCTGCCGGTCGATTCAT
CGCTGAAGGGGTTTGGGTTGAGACAGGTCCTCGTGAATTCTTGCTCATCT
CGATTATTTATTCAGCGCGGTGGTTGTGGTTGTACGCAGCAATTACCAAG
TCCGGTTCTCGCGCTGCTCGTGCTTTCGAAGTTGCTCTCGAATTACGCAG
ACTCAAGATTATACGTCTCGGATATTCGACTAGTCCAACGAGAAAAAAGA
AGCCAGAATTGGTCATACGCCGAGGGGCTAGGGTAGTTAGCGGGAAGCAT
TATTGGAGGGGTGTGGAGGAGTATGTCAAGCGTAGTGAACGAAAGGAAAC
CTATAAGGTTCGCTTGGTTGAGAAGGAACTTCATTCTGATGAGTTGGACG
AAATCGGTACTGTTGATTTCAAGACAAAGCTAGAAGCGAACGGCAGACTA
AGGGATACCCTGTTCAAGAAGTTTTATGATCTACTGCTGGTTGTCGACCA
AGTGAACAAAGATATAGTTCTGGACTATTCAAAGCTGCTCGGAAAGTACG
GAGAACTTTCCGAGACACGTCAACCTGAACGAGTTGGGGCTACAGACCGT
TCGGAAATAGGCAACGTTGCAAGGCGTGTCGCGTCCGATGCATGCTATTA
TATCTGGAACCCACATGGTGAATTCCGTACTAAAGACCAAGTGGATCTTA
TAAATGACAGTGTTGAGAGAGCGGCCGGTGTGTATATGGGCGTTCCAGAT
ATGGGACGTGATGAAATGGGTCGCGAAGATCGTCCCGTTGTGTGCCAAGA
AAAGGATAGGAATTTGTCGTTAAGCTGTGCCTTGTTTCCGGCATACAATA
ACGTGTTTCATAAAACTAAGCTACGAAACATAGTTTTCATTCCACTTTCA
TACTCTGAGGTAGATGAAGACTAA
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