Ggra1809.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1809.t1
Unique NameGgra1809.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:696323..697081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1809Ggra1809Gracilaria gracilis GNS1m malegenetig00000050_pilon 696323..697081 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1809.t1.stop1Ggra1809.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 696323..696325 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1809.t1.CDS1Ggra1809.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 696323..697081 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1809.t1.exon1Ggra1809.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 696323..697081 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1809.t1.start1Ggra1809.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 697079..697081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1809.t1Ggra1809.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 696323..697081 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1809.t1 ID=Ggra1809.t1|Name=Ggra1809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=253bp
MDSTHLQGTGTLCERFRDMMTDLNAVIRYLDDVASGKAELNEVVVNMIKH
GIDSFPYVLEGCRSRLLGMLVKKRIEQVAHFLRLRPSSITAELGSDSPQK
TEYDQHCKTETSVNYEGMFDEIPSENDRRIYGNRAYKFNRCFEEDRLVYN
LTVYRSGTKGCKRKLARFLMTSSSSIEECQLALFGTYYKSVKRRTMLFHH
LPYKSARKRKLEELITTSSDFLDEREEACWDVYYKPQKKRKRNRDDRLAS
HY*
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spliced messenger RNA

>Ggra1809.t1 ID=Ggra1809.t1|Name=Ggra1809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000050_pilon:696323..697081- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCAACACATTTGCAAGGAACGGGCACATTATGCGAAAGGTTCAG
GGATATGATGACGGATTTGAACGCGGTGATTAGGTATCTGGACGACGTTG
CCTCAGGTAAGGCGGAACTGAACGAAGTCGTGGTGAACATGATCAAACAC
GGGATTGACAGTTTCCCGTATGTCTTGGAGGGGTGCCGAAGCCGGCTGCT
TGGAATGCTTGTGAAGAAACGGATCGAGCAAGTCGCACATTTCCTCAGAC
TTCGTCCATCCTCTATCACTGCTGAATTGGGTTCGGATTCACCACAGAAA
ACGGAATATGACCAACACTGCAAGACTGAAACATCTGTCAATTACGAAGG
AATGTTTGATGAAATCCCTTCGGAAAATGACCGCAGGATCTACGGAAATC
GTGCCTATAAATTTAATCGCTGCTTTGAAGAAGATCGTCTAGTATACAAT
CTGACTGTCTATCGGTCTGGAACAAAAGGCTGCAAAAGAAAGTTAGCTCG
GTTCTTGATGACCAGTTCTAGCTCAATTGAAGAATGTCAGCTTGCTCTAT
TCGGAACGTATTATAAATCCGTTAAAAGGAGAACAATGTTGTTCCATCAT
CTTCCCTACAAGTCTGCGAGGAAGAGAAAATTGGAAGAACTTATCACGAC
TAGTTCTGACTTCCTTGACGAGAGGGAAGAAGCATGCTGGGATGTATACT
ACAAACCTCAAAAGAAGAGGAAACGCAACAGAGATGACCGTCTGGCTTCC
CATTACTAA
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protein sequence of Ggra1809.t1

>Ggra1809.t1 ID=Ggra1809.t1|Name=Ggra1809.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MDSTHLQGTGTLCERFRDMMTDLNAVIRYLDDVASGKAELNEVVVNMIKH
GIDSFPYVLEGCRSRLLGMLVKKRIEQVAHFLRLRPSSITAELGSDSPQK
TEYDQHCKTETSVNYEGMFDEIPSENDRRIYGNRAYKFNRCFEEDRLVYN
LTVYRSGTKGCKRKLARFLMTSSSSIEECQLALFGTYYKSVKRRTMLFHH
LPYKSARKRKLEELITTSSDFLDEREEACWDVYYKPQKKRKRNRDDRLAS
HY*
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mRNA from alignment at tig00000050_pilon:696323..697081-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1809.t1 ID=Ggra1809.t1|Name=Ggra1809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000050_pilon:696323..697081- (Gracilaria gracilis GNS1m male)
ATGGACTCAACACATTTGCAAGGAACGGGCACATTATGCGAAAGGTTCAG
GGATATGATGACGGATTTGAACGCGGTGATTAGGTATCTGGACGACGTTG
CCTCAGGTAAGGCGGAACTGAACGAAGTCGTGGTGAACATGATCAAACAC
GGGATTGACAGTTTCCCGTATGTCTTGGAGGGGTGCCGAAGCCGGCTGCT
TGGAATGCTTGTGAAGAAACGGATCGAGCAAGTCGCACATTTCCTCAGAC
TTCGTCCATCCTCTATCACTGCTGAATTGGGTTCGGATTCACCACAGAAA
ACGGAATATGACCAACACTGCAAGACTGAAACATCTGTCAATTACGAAGG
AATGTTTGATGAAATCCCTTCGGAAAATGACCGCAGGATCTACGGAAATC
GTGCCTATAAATTTAATCGCTGCTTTGAAGAAGATCGTCTAGTATACAAT
CTGACTGTCTATCGGTCTGGAACAAAAGGCTGCAAAAGAAAGTTAGCTCG
GTTCTTGATGACCAGTTCTAGCTCAATTGAAGAATGTCAGCTTGCTCTAT
TCGGAACGTATTATAAATCCGTTAAAAGGAGAACAATGTTGTTCCATCAT
CTTCCCTACAAGTCTGCGAGGAAGAGAAAATTGGAAGAACTTATCACGAC
TAGTTCTGACTTCCTTGACGAGAGGGAAGAAGCATGCTGGGATGTATACT
ACAAACCTCAAAAGAAGAGGAAACGCAACAGAGATGACCGTCTGGCTTCC
CATTACTAA
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Coding sequence (CDS) from alignment at tig00000050_pilon:696323..697081-

>Ggra1809.t1 ID=Ggra1809.t1|Name=Ggra1809.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000050_pilon:696323..697081- (Gracilaria gracilis GNS1m male)
ATGGACTCAACACATTTGCAAGGAACGGGCACATTATGCGAAAGGTTCAG
GGATATGATGACGGATTTGAACGCGGTGATTAGGTATCTGGACGACGTTG
CCTCAGGTAAGGCGGAACTGAACGAAGTCGTGGTGAACATGATCAAACAC
GGGATTGACAGTTTCCCGTATGTCTTGGAGGGGTGCCGAAGCCGGCTGCT
TGGAATGCTTGTGAAGAAACGGATCGAGCAAGTCGCACATTTCCTCAGAC
TTCGTCCATCCTCTATCACTGCTGAATTGGGTTCGGATTCACCACAGAAA
ACGGAATATGACCAACACTGCAAGACTGAAACATCTGTCAATTACGAAGG
AATGTTTGATGAAATCCCTTCGGAAAATGACCGCAGGATCTACGGAAATC
GTGCCTATAAATTTAATCGCTGCTTTGAAGAAGATCGTCTAGTATACAAT
CTGACTGTCTATCGGTCTGGAACAAAAGGCTGCAAAAGAAAGTTAGCTCG
GTTCTTGATGACCAGTTCTAGCTCAATTGAAGAATGTCAGCTTGCTCTAT
TCGGAACGTATTATAAATCCGTTAAAAGGAGAACAATGTTGTTCCATCAT
CTTCCCTACAAGTCTGCGAGGAAGAGAAAATTGGAAGAACTTATCACGAC
TAGTTCTGACTTCCTTGACGAGAGGGAAGAAGCATGCTGGGATGTATACT
ACAAACCTCAAAAGAAGAGGAAACGCAACAGAGATGACCGTCTGGCTTCC
CATTACTAA
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