Ggra1858.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1858.t1
Unique NameGgra1858.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:964642..966056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15713496
PFAMsGelsolin
Max annot lvl33208|Metazoa
KEGG koko:K05768
KEGG Pathwayko04666,ko04810,ko05203,map04666,map04810,map05203
GOsGO:0003674,GO:0003779,GO:0003785,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010639,GO:0016043,GO:0022411,GO:0030029,GO:0030036,GO:0030042,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030837,GO:0031333,GO:0032271,GO:0032272,GO:0032535,GO:0032956,GO:0032970,GO:0032984,GO:0033043,GO:0035091,GO:0043167,GO:0043168,GO:0043242,GO:0043244,GO:0043254,GO:0043624,GO:0043933,GO:0044087,GO:0044877,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0051014,GO:0051015,GO:0051016,GO:0051128,GO:0051129,GO:0051130,GO:0051261,GO:0051493,GO:0051494,GO:0051693,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0097435,GO:0110053,GO:1901879,GO:1901880,GO:1901981,GO:1902903,GO:1902904,GO:1902936,GO:1905806,GO:1905808
Evalue8.59e-70
EggNOG OGsKOG0443@1|root,KOG0443@2759|Eukaryota,38BDF@33154|Opisthokonta,3B9RZ@33208|Metazoa
Descriptionactin filament severing
COG categoryZ
BRITEko00000,ko00001,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1858Ggra1858Gracilaria gracilis GNS1m malegenetig00000050_pilon 964642..966056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1858.t1Ggra1858.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 964642..966056 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1858.t1.stop1Ggra1858.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 964642..964644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1858.t1.CDS1Ggra1858.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 964642..965314 -
Ggra1858.t1.CDS2Ggra1858.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 965397..965491 -
Ggra1858.t1.CDS3Ggra1858.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000050_pilon 965583..966056 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1858.t1.exon1Ggra1858.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 964642..965314 -
Ggra1858.t1.exon2Ggra1858.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 965397..965491 -
Ggra1858.t1.exon3Ggra1858.t1.exon3Gracilaria gracilis GNS1m maleexontig00000050_pilon 965583..966056 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1858.t1.intron1Ggra1858.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 965315..965396 -
Ggra1858.t1.intron2Ggra1858.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000050_pilon 965492..965582 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1858.t1.start1Ggra1858.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 966054..966056 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1858.t1 ID=Ggra1858.t1|Name=Ggra1858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MLGFGKKAFAFYSKLTANDDATSSPRSVDPSKILASMSSAVDGDNKWKLT
NIGAIGSDQDKNLREQAAESEHQFDGAGSAPGIEIWRVEKFVPQKQQLYA
ENLSLYSGDAYIVLKTTQTDSGEYEWHLHYWIGKDATNDESGSAAYFTVN
IDDMLQQKPVQHRELQYSETKLFHSYFSSVTYLDGGIDSGFKKVQPEEYQ
PRLLRMTGIGQSIRVLQVPLKPASLNNSDVFILDNGLTVYQFNSVNANHN
ERRRAMQIVQEDIRMQRDGEPELTILDGDEVFECEPFWELLGDKLSELPE
GEPFDDDGDDEVDFSAPKKLFKVSNESGSLVLSLEKEGAELTESDIDNDD
VWAIACDGKCFIYIGEHTNKDEKFYVWNSCSNILLAAELDEDAQTTFFSK
DSDSAIWKQLFSG*
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spliced messenger RNA

>Ggra1858.t1 ID=Ggra1858.t1|Name=Ggra1858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000050_pilon:964642..966056- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGGATTCGGAAAGAAGGCGTTCGCCTTCTACTCCAAGCTTACCGC
TAACGACGATGCCACCAGCTCGCCGCGCTCCGTCGACCCGTCCAAGATCC
TCGCTTCCATGTCGTCCGCCGTCGACGGCGACAACAAGTGGAAGCTCACA
AACATCGGTGCAATTGGATCCGATCAGGACAAGAACTTGCGCGAGCAGGC
TGCTGAGTCGGAGCATCAGTTCGACGGCGCCGGCTCCGCTCCAGGCATCG
AGATTTGGCGCGTAGAAAAGTTCGTGCCGCAGAAACAACAGCTGTATGCC
GAAAACCTGTCCTTGTATAGCGGTGACGCGTACATTGTGCTCAAGACCAC
TCAAACTGACAGCGGCGAGTATGAATGGCACTTGCATTATTGGATTGGAA
AGGATGCTACAAACGATGAAAGTGGATCCGCCGCCTATTTCACGGTCAAC
ATTGATGATATGCTGCAGCAAAAGCCTGTCCAGCATCGAGAGCTGCAGTA
CAGCGAGACAAAGCTCTTCCATTCGTACTTCTCGTCCGTCACCTATCTCG
ATGGTGGCATTGACAGTGGTTTTAAAAAGGTTCAACCCGAAGAGTACCAG
CCACGTCTCTTGCGCATGACCGGCATTGGTCAGAGCATTCGTGTGCTGCA
GGTACCGCTCAAACCCGCCTCTCTGAACAACAGCGATGTGTTCATTCTGG
ACAACGGCCTCACCGTGTATCAGTTCAACTCTGTGAATGCCAATCATAAC
GAACGTCGTCGCGCCATGCAAATCGTTCAGGAGGACATCCGTATGCAGCG
TGACGGAGAGCCGGAGCTCACCATCTTGGATGGCGATGAGGTATTCGAGT
GCGAGCCGTTTTGGGAGCTGCTCGGTGACAAGCTTTCCGAGCTGCCGGAG
GGGGAGCCGTTTGATGACGACGGCGACGATGAAGTGGACTTTTCAGCACC
GAAGAAATTGTTCAAGGTTTCTAATGAGAGTGGCTCGCTGGTGCTGTCTC
TCGAGAAAGAAGGCGCCGAGCTTACGGAAAGCGATATCGACAATGATGAC
GTTTGGGCCATTGCTTGTGATGGCAAATGCTTCATCTATATTGGAGAGCA
TACCAACAAGGACGAGAAGTTCTACGTGTGGAACAGTTGCTCCAACATTT
TGCTTGCTGCCGAGCTTGATGAAGATGCGCAGACGACGTTCTTCTCAAAA
GATTCTGACAGCGCCATTTGGAAACAACTATTCAGTGGTTGA
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protein sequence of Ggra1858.t1

>Ggra1858.t1 ID=Ggra1858.t1|Name=Ggra1858.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MLGFGKKAFAFYSKLTANDDATSSPRSVDPSKILASMSSAVDGDNKWKLT
NIGAIGSDQDKNLREQAAESEHQFDGAGSAPGIEIWRVEKFVPQKQQLYA
ENLSLYSGDAYIVLKTTQTDSGEYEWHLHYWIGKDATNDESGSAAYFTVN
IDDMLQQKPVQHRELQYSETKLFHSYFSSVTYLDGGIDSGFKKVQPEEYQ
PRLLRMTGIGQSIRVLQVPLKPASLNNSDVFILDNGLTVYQFNSVNANHN
ERRRAMQIVQEDIRMQRDGEPELTILDGDEVFECEPFWELLGDKLSELPE
GEPFDDDGDDEVDFSAPKKLFKVSNESGSLVLSLEKEGAELTESDIDNDD
VWAIACDGKCFIYIGEHTNKDEKFYVWNSCSNILLAAELDEDAQTTFFSK
DSDSAIWKQLFSG*
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mRNA from alignment at tig00000050_pilon:964642..966056-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1858.t1 ID=Ggra1858.t1|Name=Ggra1858.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1415bp|location=Sequence derived from alignment at tig00000050_pilon:964642..966056- (Gracilaria gracilis GNS1m male)
ATGCTCGGATTCGGAAAGAAGGCGTTCGCCTTCTACTCCAAGCTTACCGC
TAACGACGATGCCACCAGCTCGCCGCGCTCCGTCGACCCGTCCAAGATCC
TCGCTTCCATGTCGTCCGCCGTCGACGGCGACAACAAGTGGAAGCTCACA
AACATCGGTGCAATTGGATCCGATCAGGACAAGAACTTGCGCGAGCAGGC
TGCTGAGTCGGAGCATCAGTTCGACGGCGCCGGCTCCGCTCCAGGCATCG
AGATTTGGCGCGTAGAAAAGTTCGTGCCGCAGAAACAACAGCTGTATGCC
GAAAACCTGTCCTTGTATAGCGGTGACGCGTACATTGTGCTCAAGACCAC
TCAAACTGACAGCGGCGAGTATGAATGGCACTTGCATTATTGGATTGGAA
AGGATGCTACAAACGATGAAAGTGGATCCGCCGCCTATTTCACGGTCAAC
ATTGATGATATGCTGCAGCAAAAGGTCAGTTTCATGCCATGTTTTGCTGA
CGTCCGCCTGAGCTACTTTTGCTGACCTTCCTTTTTTCCTGCTTTTGTTC
TTGTTGGTTCAACAGCCTGTCCAGCATCGAGAGCTGCAGTACAGCGAGAC
AAAGCTCTTCCATTCGTACTTCTCGTCCGTCACCTATCTCGATGGTGGCA
TTGACAGTGGGTAAGTTAACCGTCTCATGTTGTATACCGTATACCAAATG
TCAGTTGCCCATCTAACATGCCCGTCATGCTATCGATTACAGTTTTAAAA
AGGTTCAACCCGAAGAGTACCAGCCACGTCTCTTGCGCATGACCGGCATT
GGTCAGAGCATTCGTGTGCTGCAGGTACCGCTCAAACCCGCCTCTCTGAA
CAACAGCGATGTGTTCATTCTGGACAACGGCCTCACCGTGTATCAGTTCA
ACTCTGTGAATGCCAATCATAACGAACGTCGTCGCGCCATGCAAATCGTT
CAGGAGGACATCCGTATGCAGCGTGACGGAGAGCCGGAGCTCACCATCTT
GGATGGCGATGAGGTATTCGAGTGCGAGCCGTTTTGGGAGCTGCTCGGTG
ACAAGCTTTCCGAGCTGCCGGAGGGGGAGCCGTTTGATGACGACGGCGAC
GATGAAGTGGACTTTTCAGCACCGAAGAAATTGTTCAAGGTTTCTAATGA
GAGTGGCTCGCTGGTGCTGTCTCTCGAGAAAGAAGGCGCCGAGCTTACGG
AAAGCGATATCGACAATGATGACGTTTGGGCCATTGCTTGTGATGGCAAA
TGCTTCATCTATATTGGAGAGCATACCAACAAGGACGAGAAGTTCTACGT
GTGGAACAGTTGCTCCAACATTTTGCTTGCTGCCGAGCTTGATGAAGATG
CGCAGACGACGTTCTTCTCAAAAGATTCTGACAGCGCCATTTGGAAACAA
CTATTCAGTGGTTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:964642..966056-

>Ggra1858.t1 ID=Ggra1858.t1|Name=Ggra1858.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000050_pilon:964642..966056- (Gracilaria gracilis GNS1m male)
ATGCTCGGATTCGGAAAGAAGGCGTTCGCCTTCTACTCCAAGCTTACCGC
TAACGACGATGCCACCAGCTCGCCGCGCTCCGTCGACCCGTCCAAGATCC
TCGCTTCCATGTCGTCCGCCGTCGACGGCGACAACAAGTGGAAGCTCACA
AACATCGGTGCAATTGGATCCGATCAGGACAAGAACTTGCGCGAGCAGGC
TGCTGAGTCGGAGCATCAGTTCGACGGCGCCGGCTCCGCTCCAGGCATCG
AGATTTGGCGCGTAGAAAAGTTCGTGCCGCAGAAACAACAGCTGTATGCC
GAAAACCTGTCCTTGTATAGCGGTGACGCGTACATTGTGCTCAAGACCAC
TCAAACTGACAGCGGCGAGTATGAATGGCACTTGCATTATTGGATTGGAA
AGGATGCTACAAACGATGAAAGTGGATCCGCCGCCTATTTCACGGTCAAC
ATTGATGATATGCTGCAGCAAAAGCCTGTCCAGCATCGAGAGCTGCAGTA
CAGCGAGACAAAGCTCTTCCATTCGTACTTCTCGTCCGTCACCTATCTCG
ATGGTGGCATTGACAGTGGTTTTAAAAAGGTTCAACCCGAAGAGTACCAG
CCACGTCTCTTGCGCATGACCGGCATTGGTCAGAGCATTCGTGTGCTGCA
GGTACCGCTCAAACCCGCCTCTCTGAACAACAGCGATGTGTTCATTCTGG
ACAACGGCCTCACCGTGTATCAGTTCAACTCTGTGAATGCCAATCATAAC
GAACGTCGTCGCGCCATGCAAATCGTTCAGGAGGACATCCGTATGCAGCG
TGACGGAGAGCCGGAGCTCACCATCTTGGATGGCGATGAGGTATTCGAGT
GCGAGCCGTTTTGGGAGCTGCTCGGTGACAAGCTTTCCGAGCTGCCGGAG
GGGGAGCCGTTTGATGACGACGGCGACGATGAAGTGGACTTTTCAGCACC
GAAGAAATTGTTCAAGGTTTCTAATGAGAGTGGCTCGCTGGTGCTGTCTC
TCGAGAAAGAAGGCGCCGAGCTTACGGAAAGCGATATCGACAATGATGAC
GTTTGGGCCATTGCTTGTGATGGCAAATGCTTCATCTATATTGGAGAGCA
TACCAACAAGGACGAGAAGTTCTACGTGTGGAACAGTTGCTCCAACATTT
TGCTTGCTGCCGAGCTTGATGAAGATGCGCAGACGACGTTCTTCTCAAAA
GATTCTGACAGCGCCATTTGGAAACAACTATTCAGTGGTTGA
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