Ggra951.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra951.t1
Unique NameGgra951.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:914948..915862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog331869.BAL199_24169
PFAMsTauD
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC01331
KEGG koko:K03119
KEGG ReactionR05320
KEGG Pathwayko00430,ko00920,map00430,map00920
Evalue1.86e-109
EggNOG OGsCOG2175@1|root,COG2175@2|Bacteria,1MV5K@1224|Proteobacteria,2VGYC@28211|Alphaproteobacteria
EC1.14.11.17
DescriptionTaurine catabolism dioxygenase TauD, TfdA family
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra951Ggra951Gracilaria gracilis GNS1m malegenetig00000049_pilon 914948..915862 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra951.t1.stop1Ggra951.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 914948..914950 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra951.t1.CDS1Ggra951.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 914948..915862 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra951.t1.exon1Ggra951.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 914948..915862 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra951.t1.start1Ggra951.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 915860..915862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra951.t1Ggra951.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 914948..915862 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra951.t1 ID=Ggra951.t1|Name=Ggra951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=305bp
MALTFTPLSPLFGATVEGVRPDEITAADAAALKTGLAEHKVLSIPTQNAS
PDDFLSVARAFGELEPFFLSAYSLETHPEIYVLSNVRRDGAPIGRDGAGF
HWHSDHTFQDRPCSATLLHGVTCPEEGGDTLFVDMAAAYRRLPEAMKTQL
QGLKAVHQYQKKEFAFTAEREVDAETAEKIAHLKRKRAEEEAAQAKSASA
KASGAVPEVAHPIVRTHPVTGDKALYLNEEMTVGVEGMEEEAGRALLRQL
AVHATPEDAILRYKWRSGDIVIWDNASTMHSATYTDPAHDRVMHRLTIKG
EAPV*
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spliced messenger RNA

>Ggra951.t1 ID=Ggra951.t1|Name=Ggra951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000049_pilon:914948..915862- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTAACCTTCACCCCTCTTTCGCCACTGTTCGGCGCGACTGTGGA
AGGGGTGCGCCCGGACGAGATAACGGCGGCAGACGCAGCGGCGTTGAAAA
CCGGGCTGGCGGAGCACAAGGTTCTGTCGATCCCAACGCAAAACGCCTCA
CCTGACGACTTTCTGTCTGTTGCGCGCGCCTTCGGCGAATTAGAGCCGTT
TTTTCTGTCCGCCTATTCGCTTGAGACGCATCCCGAGATCTATGTCCTGT
CGAATGTCCGCAGGGATGGCGCGCCGATCGGGCGGGATGGCGCGGGGTTT
CACTGGCACTCGGATCATACATTTCAGGATAGGCCCTGCTCAGCGACGCT
CCTCCACGGTGTGACGTGCCCTGAGGAAGGCGGCGATACGTTGTTTGTTG
ATATGGCGGCGGCGTATCGACGGTTGCCAGAGGCGATGAAAACGCAACTT
CAAGGGCTTAAAGCCGTTCATCAATACCAGAAGAAGGAATTCGCCTTCAC
TGCTGAGCGCGAGGTGGACGCAGAAACGGCAGAGAAGATCGCCCACCTGA
AACGTAAGCGGGCCGAGGAAGAGGCGGCGCAAGCGAAAAGCGCCTCCGCC
AAAGCGTCGGGGGCGGTGCCCGAAGTTGCCCATCCCATCGTTCGCACCCA
TCCCGTAACCGGCGATAAAGCGCTTTATCTTAACGAAGAAATGACGGTTG
GCGTTGAAGGTATGGAGGAAGAGGCGGGCCGCGCCCTTCTTCGCCAACTT
GCTGTTCACGCGACGCCGGAAGACGCTATACTGCGGTACAAGTGGCGCAG
CGGCGATATCGTGATCTGGGACAACGCCAGCACGATGCACAGCGCAACCT
ATACCGACCCCGCCCATGATCGGGTGATGCATCGCCTGACGATCAAGGGC
GAGGCGCCGGTCTAA
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protein sequence of Ggra951.t1

>Ggra951.t1 ID=Ggra951.t1|Name=Ggra951.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MALTFTPLSPLFGATVEGVRPDEITAADAAALKTGLAEHKVLSIPTQNAS
PDDFLSVARAFGELEPFFLSAYSLETHPEIYVLSNVRRDGAPIGRDGAGF
HWHSDHTFQDRPCSATLLHGVTCPEEGGDTLFVDMAAAYRRLPEAMKTQL
QGLKAVHQYQKKEFAFTAEREVDAETAEKIAHLKRKRAEEEAAQAKSASA
KASGAVPEVAHPIVRTHPVTGDKALYLNEEMTVGVEGMEEEAGRALLRQL
AVHATPEDAILRYKWRSGDIVIWDNASTMHSATYTDPAHDRVMHRLTIKG
EAPV*
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mRNA from alignment at tig00000049_pilon:914948..915862-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra951.t1 ID=Ggra951.t1|Name=Ggra951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000049_pilon:914948..915862- (Gracilaria gracilis GNS1m male)
ATGGCGCTAACCTTCACCCCTCTTTCGCCACTGTTCGGCGCGACTGTGGA
AGGGGTGCGCCCGGACGAGATAACGGCGGCAGACGCAGCGGCGTTGAAAA
CCGGGCTGGCGGAGCACAAGGTTCTGTCGATCCCAACGCAAAACGCCTCA
CCTGACGACTTTCTGTCTGTTGCGCGCGCCTTCGGCGAATTAGAGCCGTT
TTTTCTGTCCGCCTATTCGCTTGAGACGCATCCCGAGATCTATGTCCTGT
CGAATGTCCGCAGGGATGGCGCGCCGATCGGGCGGGATGGCGCGGGGTTT
CACTGGCACTCGGATCATACATTTCAGGATAGGCCCTGCTCAGCGACGCT
CCTCCACGGTGTGACGTGCCCTGAGGAAGGCGGCGATACGTTGTTTGTTG
ATATGGCGGCGGCGTATCGACGGTTGCCAGAGGCGATGAAAACGCAACTT
CAAGGGCTTAAAGCCGTTCATCAATACCAGAAGAAGGAATTCGCCTTCAC
TGCTGAGCGCGAGGTGGACGCAGAAACGGCAGAGAAGATCGCCCACCTGA
AACGTAAGCGGGCCGAGGAAGAGGCGGCGCAAGCGAAAAGCGCCTCCGCC
AAAGCGTCGGGGGCGGTGCCCGAAGTTGCCCATCCCATCGTTCGCACCCA
TCCCGTAACCGGCGATAAAGCGCTTTATCTTAACGAAGAAATGACGGTTG
GCGTTGAAGGTATGGAGGAAGAGGCGGGCCGCGCCCTTCTTCGCCAACTT
GCTGTTCACGCGACGCCGGAAGACGCTATACTGCGGTACAAGTGGCGCAG
CGGCGATATCGTGATCTGGGACAACGCCAGCACGATGCACAGCGCAACCT
ATACCGACCCCGCCCATGATCGGGTGATGCATCGCCTGACGATCAAGGGC
GAGGCGCCGGTCTAA
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Coding sequence (CDS) from alignment at tig00000049_pilon:914948..915862-

>Ggra951.t1 ID=Ggra951.t1|Name=Ggra951.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00000049_pilon:914948..915862- (Gracilaria gracilis GNS1m male)
ATGGCGCTAACCTTCACCCCTCTTTCGCCACTGTTCGGCGCGACTGTGGA
AGGGGTGCGCCCGGACGAGATAACGGCGGCAGACGCAGCGGCGTTGAAAA
CCGGGCTGGCGGAGCACAAGGTTCTGTCGATCCCAACGCAAAACGCCTCA
CCTGACGACTTTCTGTCTGTTGCGCGCGCCTTCGGCGAATTAGAGCCGTT
TTTTCTGTCCGCCTATTCGCTTGAGACGCATCCCGAGATCTATGTCCTGT
CGAATGTCCGCAGGGATGGCGCGCCGATCGGGCGGGATGGCGCGGGGTTT
CACTGGCACTCGGATCATACATTTCAGGATAGGCCCTGCTCAGCGACGCT
CCTCCACGGTGTGACGTGCCCTGAGGAAGGCGGCGATACGTTGTTTGTTG
ATATGGCGGCGGCGTATCGACGGTTGCCAGAGGCGATGAAAACGCAACTT
CAAGGGCTTAAAGCCGTTCATCAATACCAGAAGAAGGAATTCGCCTTCAC
TGCTGAGCGCGAGGTGGACGCAGAAACGGCAGAGAAGATCGCCCACCTGA
AACGTAAGCGGGCCGAGGAAGAGGCGGCGCAAGCGAAAAGCGCCTCCGCC
AAAGCGTCGGGGGCGGTGCCCGAAGTTGCCCATCCCATCGTTCGCACCCA
TCCCGTAACCGGCGATAAAGCGCTTTATCTTAACGAAGAAATGACGGTTG
GCGTTGAAGGTATGGAGGAAGAGGCGGGCCGCGCCCTTCTTCGCCAACTT
GCTGTTCACGCGACGCCGGAAGACGCTATACTGCGGTACAAGTGGCGCAG
CGGCGATATCGTGATCTGGGACAACGCCAGCACGATGCACAGCGCAACCT
ATACCGACCCCGCCCATGATCGGGTGATGCATCGCCTGACGATCAAGGGC
GAGGCGCCGGTCTAA
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