Ggra930.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra930.t1
Unique NameGgra930.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length509
Homology
BLAST of Ggra930.t1 vs. uniprot
Match: A0A2V3IIK4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIK4_9FLOR)

HSP 1 Score: 238 bits (606), Expect = 7.550e-69
Identity = 164/486 (33.74%), Postives = 254/486 (52.26%), Query Frame = 0
Query:    6 LTVDPSIWNVIKFIIISVIVTPLLEALYDRLICAKATWDALRGRTVNLSDSRLGIFALHSTYWGPRRNVTFSLFLGLIVLGVQLLLEFSFSSISVYDSMKKEVWLQPNHEDRYVRHEANWSAEVPRDPTRFPEIVSMLCIEENLRMIRV-RNGHADAPQSYIPGYEYRTNRTFTIRKPYLDYRDNVTVRCSHQANVAYAEFISPRIIVAPGDSGIEGFFAKQPATGFPRVRAAIESDPFKNVARVQVIDAMLPVSVSKTGSCIRSRV--DLYFCVVPINGMFVIASTELEGSQ---SRKLRTVLMEARGKAVAGLKERGRQIRLLASIISDDIVFPWSSNTDLPISAHLARKEHIESIARMILIVANEEGVGGMKDLHGIREIKGTQEVQRATVKMNLAIPCVVVLFAIMILIVVVDVIL-RLYISLRWQQNVKCSTDACVKVRSSPCIDLSSQWLRSRIANDLRAWYDFDNITQSDVQFRLIRGE 484
            L +DPS WNV+KFII+++I TPLLE L  R I  KAT+D +RG  V  ++S LG+ +LHS YWG RRN  + L +  +V   +L+ EFSFS+ ++  +  +EVWL P+H + Y     +      R+P +FP + +  CI+    M R  R+  AD    +I G+EY    T+ IRKPYL   DN +V CS    +    F  P + +    +G EG  A +  +    VR ++ S  F +   V  +  +     S    CIRSR     + C + +   F++A T    S     + L +V++ A G+ V G++ R R++R LA++  + ++  +        S  L  K+  E++A ++L+VANEEGVGG ++  G R     Q  Q AT+K  LA   + +L + ++ ++VV+V L +L  S    Q  K     C +  S    D S QWLR RI  DL     F NI+  ++  +++ GE
Sbjct:    6 LNLDPSTWNVLKFIILTIITTPLLEFLLQRFINTKATYDVMRGEHVQFAESNLGVLSLHSVYWGRRRNSIYLLLVASLVFASELIFEFSFSAQALDIAEPREVWLPPSHAEHYTFSRRSLDGPERREPFQFPVLAAETCIKGESEMRRTGRSNEADG--EFISGFEYHMEDTYVIRKPYLAL-DNSSVLCSVSTTIGRVSFFVPHVYLVNSSTGAEGVLALKNTSNSENVRQSLTSGTFDSYGFVNDVQVVA----SDNAVCIRSRSRSKTFLCAMYVMNAFILARTSEIWSDRVPDKTLLSVVLNATGQPVEGMRSRTRKLRYLATVSGNALLNTFVEGRRP--SHQLVTKDKTETLALLVLVVANEEGVGGSRNKIGKRSFVIGQA-QTATMK-RLAFVPIAILVSFLVFLLVVEVTLSKLIASSTKHQGRKIW--GCTRAGSRA--DTSIQWLRERICEDLLHDGVFRNISSKELSLKIVSGE 476          
BLAST of Ggra930.t1 vs. uniprot
Match: A0A2V3IUL8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUL8_9FLOR)

HSP 1 Score: 231 bits (588), Expect = 4.000e-66
Identity = 158/490 (32.24%), Postives = 263/490 (53.67%), Query Frame = 0
Query:    1 MLENNLTVDPSIWNVIKFIIISVIVTPLLEALYDRLICAKATWDALRGRTVNLSDSRLGIFALHSTYWGPRRNVTFSLFLGLIVLGVQLLLEFSFSSISVYDSMKKEVWLQPNHEDRYVRHEANWSAEVPRDPTRFPEIVSMLCIEENLRMIRVRNGHADAPQSYIPGYEYRTNRTFTIRKPYLDYRDNVTVRCSHQANVAYAEFISPRIIVAPGDSGIEGFFAKQPATGFPRVRAAIESDPFKNVARVQVIDAML-PVSVSKTGSCIRSRVDLYFCVV-PINGMFVIASTELEGSQSRKLRTVLMEARGKAVAGLKERGRQIRLLASIISDDIVFPWSSNTDLPISAHLARKEHIESIARMILIVANEEGVGGMKDLHGIREIKG-TQEVQRATVKMNLAIPCVVVLFAIMILIVVVDVILRLYISLRWQQNVKCSTDACVKVRSSPCIDLSSQWLRSRIANDLRAWYDFDNITQSDVQFRLIRGEGHE 487
            M E  L +DPSI NVIK+ ++++I+TPL E L D L+ AK+T+D L G T+  S S+LGIF+LH TYWG  RN    + LG  V+  +LL EFSFSS +V     ++VW QP+H  RY+        E+ R+PT FP  V++ C      M+R R+ H D  + Y  G E+R N  +TIR PY    D+  V CS     A A FI PR++     S +EG   + P +G+  +++ ++ +P   +      D  +  V     G+C  S     +C++   +  FV+     E         V+++A G A+ GL ERGRQ+RL+ +II +++ F      +L  S  +A K  +E++AR +++ ANEEGVGG+K     R + G ++++  AT  +  ++  + ++ +   L++V  +++R+ I+    +         V+      +  + Q++R+++  DL+ +   +++T  ++ FRL    G E
Sbjct:    1 MTEIQLGIDPSILNVIKYGVVALILTPLFEILADSLVSAKSTYDVLSGHTIEFSHSQLGIFSLHGTYWGRSRNRFMLIALGFAVIATELLFEFSFSSTTVDLEEVRQVWKQPSHAQRYIPAAGRERIELYREPTEFPGAVALRCTRGPRTMLRYRSNHTDGNERYQGGLEFRLNGNYTIRMPYRARSDD-EVLCSATQKTAKATFIVPRVVRTRTASQVEGVSLEVPTSGYKYIKSIVQDNPPPVIDLFLYTDTEVGEVRSGDNGTCAGS-----WCLIRDRDRSFVLVFWTFESI------VVVIKASGNALEGLTERGRQVRLILTIIYENL-FTGIGFNELSPSLRVAEKNDMETLARWMIVAANEEGVGGLKAATVNRTVVGGSRQMATATGYLPASVSGLALIGS---LLMVSCLLVRVMIARMGDKQ----QPFAVRFWRQWRLQTTKQYMRAKMLEDLQHYGFCESVTLQNIGFRLDTHGGPE 470          
BLAST of Ggra930.t1 vs. uniprot
Match: A0A2V3ITH0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH0_9FLOR)

HSP 1 Score: 202 bits (513), Expect = 2.840e-55
Identity = 165/507 (32.54%), Postives = 253/507 (49.90%), Query Frame = 0
Query:    1 MLENNLTVDPSIWNVIKFIIISVIVTPLLEALYDRLICAKATWDALRGRTVNLSDSRLGIFALHSTYWGPRRNVTFSLFLGLIVLGVQLLLEFSFSSISVYDSMKKEVWLQPNHEDRYVRHEANWSAEVPRDPTRFPEIVSML--CIEENLRMIRVRNGHADAPQSYIPGYEYRTNRTFTIRKPYLDYRDNVTVRCSHQANVAYAEFISPRII-VAPGDSGIEGF--FAKQPATGFPRVRAAIESDPFKNVARVQVIDAMLPVSVSKTGSCIRSRVDLYF------CVVPINGMFVIASTELEGSQSR-KLRTVLMEARGKAVAGLKER-GRQIRLLASIISDDIVFPWSSNTDLPISAHLARKEHIESIARMILIVANEEGVGGMKDLHGIREI-KGTQEVQRATVKMNLAIPCVVVLFAIMILIVVVDVILRLYISLRWQQNVKCSTDACVKVRSSPCIDLSSQWLRSRIANDLRAWYDFDNITQSDVQFRLIRGEGHEHFTVLP 493
            M E +L V PS+WN+IK++ +S+I+TP  E L  RL   KA WD LRGRTV LSD+RLGIF+LHST+WG  RN    L +G  V+ ++LL EFSFSS  V  S  ++VW QP+H+ RY+   ++      R+P   P   + +  C+E    M R      +  Q+ +   EY  N  +T+R+PYL   DN T+ CS       A F  P    V   D   EGF  F       + R   A      +  A + + D  L +   K   CI S+    F      C +     F +A   L     R  + T++ME  G A+  L ++ GRQIR L S +  ++V+   ++      A   RK  +E I ++ LIVANEEGV G++ +   RE+  G QE  RA+VK    IP  ++   +++L + ++V+L + I+   ++                 + +S+Q+LR ++ NDL       N  Q ++ ++L++    +   +LP
Sbjct:    1 MEELSLNVSPSVWNIIKYVTLSLIITPTFEFLLHRLSQQKARWDILRGRTVALSDTRLGIFSLHSTFWGRSRNRYLLLVIGTFVIAIELLFEFSFSSKLVAKSKTEQVWSQPDHQQRYLI--SSEEVHFMREPALLPVEAANIEGCVEGEFNMRRKEKTKDEFQQTIM---EYSINGMYTVRRPYLSATDNATLYCSADHIEKKASFFVPFATKVVYDDVEEEGFDYFGAFEDKFYNRSIYADVDMKLRFKANLTIDDTKLYMFNGKNSICIGSKSLAVFGTAYLLCGLRAQSAFSLAVGSLHEDDERVSISTIVMEMSGPALGPLVDQAGRQIRFLLSNLFLNLVWHRPASE----GASKLRKTTLEQIVQIALIVANEEGVAGIRRVKASREVLDGVQE--RASVKRLAIIPGALI-GGMLLLFISMNVLLAICIAKAQRKT------------GQHSVRISTQFLRKQLRNDLLGMRAAHNEWQ-EIGYKLVQDADEQRLQLLP 482          
BLAST of Ggra930.t1 vs. uniprot
Match: A0A2V3IIJ0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIJ0_9FLOR)

HSP 1 Score: 127 bits (318), Expect = 6.860e-28
Identity = 110/395 (27.85%), Postives = 183/395 (46.33%), Query Frame = 0
Query:    6 LTVDPSIWNVIKFIIISVIVTPLLEALYDRLICAKATWDALRGRTVNLSDSRLGIFALHSTYWGPRRNVTFSLFLGLIVLGVQLLLEFSFSSISVYDSMKKEVWLQPNHEDRYVRHEANWSAEVPRDPTRFPEIVSMLCIEENLRMIR--VRNGHADAPQSYIPGYEYRTNRTFTIRKPYLDYRDNVTVRCSHQANVAYAEFISPRIIVAPGDSGIEGFFAK-QPATGFP--------------RVRAAIESDPFKNVARVQVIDAMLPVSVSKTGSCIRSRVDLYFCVVPINGMFVIASTELEGSQSRKLRTVLMEARG-KAVAGLKERGRQIRLLASIISDDIVFPWSSNTDLPISAHLARKEHIESIARMILIVANEEGVGGMKDLHGIREI 382
            L + PS+WNV+K+ + ++++TP  E +   L+ + AT     G  + L DS+LGIFALHS Y G RR   + +    +++ ++L LE SFS+  V  ++ +EVW+ PNH++RY+R E N+S  +  +PTR  E +S  CI     M R  V+       +      +Y     +T+R  Y+   D++ V C   A   +A   +P I+      G+EGF +   PA G                R     E +  +  +  +     L   V +        + L  C + +N    +A T   G    +   +L+   G + +AG     RQ+RLLA +    I++P  SNT       + +K  +E +A   L+V+ E  V G+ +    R +
Sbjct:    7 LNLSPSVWNVLKWALFTLVITPAFEIMTASLMASSATARVQAGAQLELFDSQLGIFALHSRYAGKRRTRLWLVLGTAVLMALELWLEMSFSAAEVVVTVSEEVWVGPNHDERYMRRE-NFS--INDEPTRLLETMSRQCIAGPRAMKRDSVQRATVTVLEEAEVIAQYSLTANWTVRAAYVREEDSL-VACDAVAETKWASVEAPNIV---SQYGVEGFHSDCDPALGLDSEWFQTLHNESFTQRGAFVFEGERARAYSGTRATCVELDAGVDRAEDIDDVPLRLV-CALQLNS--TVAITLTAGLNIARCVALLLHGPGVETLAG--SHARQLRLLAFVAETRILWPGWSNT----LKGMVQKRSLERVAMAALMVSGERAVSGVAERRERRRV 385          
The following BLAST results are available for this feature:
BLAST of Ggra930.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IIK47.550e-6933.74Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUL84.000e-6632.24Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ITH02.840e-5532.54Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IIJ06.860e-2827.85Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 420..508
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..73
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 96..396
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 74..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 397..419
NoneNo IPR availableTMHMMTMhelixcoord: 74..96
NoneNo IPR availableTMHMMTMhelixcoord: 402..424
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:653186..654712 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra930.t1Ggra930.t1Gracilaria gracilis GNS1m malemRNAtig00000049_pilon 653186..654712 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra930.t1 ID=Ggra930.t1|Name=Ggra930.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=509bp
MLENNLTVDPSIWNVIKFIIISVIVTPLLEALYDRLICAKATWDALRGRT
VNLSDSRLGIFALHSTYWGPRRNVTFSLFLGLIVLGVQLLLEFSFSSISV
YDSMKKEVWLQPNHEDRYVRHEANWSAEVPRDPTRFPEIVSMLCIEENLR
MIRVRNGHADAPQSYIPGYEYRTNRTFTIRKPYLDYRDNVTVRCSHQANV
AYAEFISPRIIVAPGDSGIEGFFAKQPATGFPRVRAAIESDPFKNVARVQ
VIDAMLPVSVSKTGSCIRSRVDLYFCVVPINGMFVIASTELEGSQSRKLR
TVLMEARGKAVAGLKERGRQIRLLASIISDDIVFPWSSNTDLPISAHLAR
KEHIESIARMILIVANEEGVGGMKDLHGIREIKGTQEVQRATVKMNLAIP
CVVVLFAIMILIVVVDVILRLYISLRWQQNVKCSTDACVKVRSSPCIDLS
SQWLRSRIANDLRAWYDFDNITQSDVQFRLIRGEGHEHFTVLPDPTQHKC
SNGLGFIS*
back to top