Ggra6026.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6026.t1
Unique NameGgra6026.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length95
Homology
BLAST of Ggra6026.t1 vs. uniprot
Match: A0A2V3IK58 (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK58_9FLOR)

HSP 1 Score: 179 bits (454), Expect = 5.200e-57
Identity = 89/94 (94.68%), Postives = 92/94 (97.87%), Query Frame = 0
Query:    1 MTAGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVEETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS 94
            MTA TVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILG+VEET+TTTDVDPETFEELLKTSKR IPMLFVRGDCV+LISPPLRTS
Sbjct:    1 MTAQTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGDVEETITTTDVDPETFEELLKTSKRHIPMLFVRGDCVILISPPLRTS 94          
BLAST of Ggra6026.t1 vs. uniprot
Match: B3RUU9 (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Trichoplax TaxID=10227 RepID=B3RUU9_TRIAD)

HSP 1 Score: 147 bits (372), Expect = 2.270e-44
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 0
Query:    2 TAGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVEETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS 94
            T+ TVE+PLDLVRLSLDE I VKMR DRELRG+LHA+DQHLNM+LG+VEET+TT ++D ETFEEL KTSKR IPML+VRGD V+L+SPPLR  
Sbjct:   10 TSNTVEEPLDLVRLSLDERILVKMRNDRELRGRLHAYDQHLNMVLGDVEETITTVEIDDETFEELYKTSKRQIPMLYVRGDGVILVSPPLRVG 102          
BLAST of Ggra6026.t1 vs. uniprot
Match: A0A1S3HGS7 (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HGS7_LINUN)

HSP 1 Score: 146 bits (369), Expect = 6.130e-44
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 0
Query:    3 AGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVEETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS 94
            A TVE+PLDL+RLSLDE I VKMR DRELRG+LHA+DQHLNMILGEVEETVTT ++D ET+EE+ K++KR IPMLFVRGD V+L+SPPLRT 
Sbjct:   11 ANTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGEVEETVTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVILVSPPLRTG 102          
BLAST of Ggra6026.t1 vs. uniprot
Match: R1DJQ4 (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Eukaryota TaxID=2759 RepID=R1DJQ4_EMIHU)

HSP 1 Score: 145 bits (366), Expect = 1.340e-43
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 0
Query:    3 AGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVEETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS 94
            +  V +PLDLVRLSLDE I VK+RGDR+LRG+LHAFDQHLNM+LGEVEETVTT +VD ET+EE++KTSKR I MLFVRGD VVL+SPPLRTS
Sbjct:    2 SSVVAEPLDLVRLSLDERILVKLRGDRDLRGRLHAFDQHLNMVLGEVEETVTTIEVDEETYEEIIKTSKRQIDMLFVRGDGVVLVSPPLRTS 93          
BLAST of Ggra6026.t1 vs. uniprot
Match: A0A0M0JVC1 (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 145 bits (365), Expect = 1.960e-43
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 0
Query:    1 MTAGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVEETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS 94
            M +  V++P+DLVRLSLDE I VKMRGDRELRGKLHA+DQHLNM+LG+VEE VTT +VD ET+EE++KTSKR I MLFVRGD V+LISPPLRT 
Sbjct:    1 MASTLVKEPIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRTQ 94          
BLAST of Ggra6026.t1 vs. uniprot
Match: A0A6P8H714 (U6 snRNA-associated Sm-like protein LSm3 n=3 Tax=Hexacorallia TaxID=6102 RepID=A0A6P8H714_ACTTE)

HSP 1 Score: 145 bits (365), Expect = 2.500e-43
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0
Query:    3 AGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVEETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS 94
            + TVE+PLDL+RLSLDE I VKMR DRELRG+LHAFDQHLNMI+ EVEET+TT ++D ETFEEL KT+KR IPMLFVRGD V+L+SPPLR  
Sbjct:   10 SNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAFDQHLNMIISEVEETITTVEIDEETFEELFKTTKRNIPMLFVRGDGVILVSPPLRVG 101          
BLAST of Ggra6026.t1 vs. uniprot
Match: A0A3M6TX08 (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TX08_POCDA)

HSP 1 Score: 144 bits (364), Expect = 3.340e-43
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0
Query:    3 AGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVEETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS 94
            A TVE+PLDL+RLSLDE I VK+R DRELRGKLHA+DQHLNMIL EVEET+TT ++D ET+EEL KT+KR IPMLFVRGD V+L+SPPLR  
Sbjct:    8 ANTVEEPLDLIRLSLDERIYVKLRNDRELRGKLHAYDQHLNMILSEVEETITTVEIDEETYEELFKTTKRNIPMLFVRGDGVILVSPPLRVG 99          
BLAST of Ggra6026.t1 vs. uniprot
Match: W5N7V8 (U6 snRNA-associated Sm-like protein LSm3 n=27 Tax=Euteleostomi TaxID=117571 RepID=W5N7V8_LEPOC)

HSP 1 Score: 144 bits (364), Expect = 3.550e-43
Identity = 69/93 (74.19%), Postives = 82/93 (88.17%), Query Frame = 0
Query:    2 TAGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVEETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS 94
            TA TVE+PLDL+RLSLDE I VKMR DRELRG+LHA+DQHLNMILG+VEETVTT ++D ET+EE+ K++KR IPMLFVRGD VVL++PPLR  
Sbjct:   10 TANTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102          
BLAST of Ggra6026.t1 vs. uniprot
Match: I3KZX4 (U6 snRNA-associated Sm-like protein LSm3 n=30 Tax=Percomorphaceae TaxID=1489872 RepID=I3KZX4_ORENI)

HSP 1 Score: 144 bits (362), Expect = 7.160e-43
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 0
Query:    2 TAGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVEETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS 94
            T  TVE+PLDL+RLSLDE I VKMR DRELRG+LHA+DQHLNMILG+VEETVTT ++D ET+EEL K++KR IPMLFVRGD VVL++PPLR  
Sbjct:   10 TTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102          
BLAST of Ggra6026.t1 vs. uniprot
Match: A0A667YX55 (U6 snRNA-associated Sm-like protein LSm3 n=36 Tax=Euacanthomorphacea TaxID=123369 RepID=A0A667YX55_9TELE)

HSP 1 Score: 144 bits (362), Expect = 7.160e-43
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 0
Query:    2 TAGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVEETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS 94
            T  TVE+PLDL+RLSLDE I VKMR DRELRG+LHA+DQHLNMILG+VEETVTT ++D ET+EEL K++KR IPMLFVRGD VVL++PPLR  
Sbjct:   10 TTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG 102          
The following BLAST results are available for this feature:
BLAST of Ggra6026.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IK585.200e-5794.68U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=G... [more]
B3RUU92.270e-4475.27U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=T... [more]
A0A1S3HGS76.130e-4476.09U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=L... [more]
R1DJQ41.340e-4377.17U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A0M0JVC11.960e-4374.47U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C... [more]
A0A6P8H7142.500e-4375.00U6 snRNA-associated Sm-like protein LSm3 n=3 Tax=H... [more]
A0A3M6TX083.340e-4375.00U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=P... [more]
W5N7V83.550e-4374.19U6 snRNA-associated Sm-like protein LSm3 n=27 Tax=... [more]
I3KZX47.160e-4374.19U6 snRNA-associated Sm-like protein LSm3 n=30 Tax=... [more]
A0A667YX557.160e-4374.19U6 snRNA-associated Sm-like protein LSm3 n=36 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 11..89
e-value: 4.9E-21
score: 85.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 14..89
e-value: 3.3E-20
score: 71.6
NoneNo IPR availableGENE3D2.30.30.100coord: 1..91
e-value: 5.9E-25
score: 89.1
NoneNo IPR availablePANTHERPTHR13110:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 2..93
IPR040002U6 snRNA-associated Sm-like protein Lsm3PANTHERPTHR13110U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 2..93
IPR034105Sm-like protein Lsm3CDDcd01730LSm3coord: 8..89
e-value: 2.59671E-49
score: 148.913
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 8..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:163522..163893 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6026.t1Ggra6026.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 163522..163893 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6026.t1 ID=Ggra6026.t1|Name=Ggra6026.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=95bp
MTAGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVE
ETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR040002Sm-like_LSM3
IPR034105Lsm3
IPR010920LSM_dom_sf