Ggra6026.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6026.t1
Unique NameGgra6026.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length95
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:163522..163893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP23866
Preferred nameLSM3
PFAMsLSM
Max annot lvl33208|Metazoa
KEGG koko:K12622
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030629,GO:0031974,GO:0031981,GO:0032991,GO:0033962,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
Evalue3.97e-45
EggNOG OGsKOG3460@1|root,KOG3460@2759|Eukaryota,3A5WN@33154|Opisthokonta,3BRF9@33208|Metazoa
DescriptionU6 snRNA-associated Sm-like protein
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6026Ggra6026Gracilaria gracilis GNS1m malegenetig00000045_pilon 163522..163893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6026.t1Ggra6026.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 163522..163893 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6026.t1.start1Ggra6026.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 163522..163524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6026.t1.CDS1Ggra6026.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 163522..163629 +
Ggra6026.t1.CDS2Ggra6026.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 163717..163893 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6026.t1.exon1Ggra6026.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 163522..163629 +
Ggra6026.t1.exon2Ggra6026.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 163717..163893 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6026.t1.intron1Ggra6026.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 163630..163716 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6026.t1.stop1Ggra6026.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 163891..163893 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6026.t1 ID=Ggra6026.t1|Name=Ggra6026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=95bp
MTAGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVE
ETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS*
back to top

spliced messenger RNA

>Ggra6026.t1 ID=Ggra6026.t1|Name=Ggra6026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=285bp|location=Sequence derived from alignment at tig00000045_pilon:163522..163893+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCTGGGACTGTAGAGCAGCCTCTTGATCTTGTTCGACTTTCTCT
GGACGAAACAATCCGAGTGAAAATGCGCGGGGATCGCGAGTTGCGGGGAA
AACTGCATGCGTTTGACCAACATCTTAACATGATTCTGGGAGAAGTGGAG
GAGACAGTCACTACTACGGATGTAGATCCAGAGACATTCGAAGAGCTGTT
GAAAACGTCCAAGCGTGTAATTCCGATGTTATTTGTTCGCGGGGATTGTG
TTGTTCTGATATCTCCACCGCTGCGAACATCCTGA
back to top

protein sequence of Ggra6026.t1

>Ggra6026.t1 ID=Ggra6026.t1|Name=Ggra6026.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=95bp
MTAGTVEQPLDLVRLSLDETIRVKMRGDRELRGKLHAFDQHLNMILGEVE
ETVTTTDVDPETFEELLKTSKRVIPMLFVRGDCVVLISPPLRTS*
back to top

mRNA from alignment at tig00000045_pilon:163522..163893+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6026.t1 ID=Ggra6026.t1|Name=Ggra6026.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00000045_pilon:163522..163893+ (Gracilaria gracilis GNS1m male)
ATGACAGCTGGGACTGTAGAGCAGCCTCTTGATCTTGTTCGACTTTCTCT
GGACGAAACAATCCGAGTGAAAATGCGCGGGGATCGCGAGTTGCGGGGAA
AACTGCATGTAAGTAAACCTCAAAGGGCGTCTCGCGTTTGAAGCGAAAGC
GATTAGCGCCAGTTGACTAACGTGTTAAATTATATACCTATACAGGCGTT
TGACCAACATCTTAACATGATTCTGGGAGAAGTGGAGGAGACAGTCACTA
CTACGGATGTAGATCCAGAGACATTCGAAGAGCTGTTGAAAACGTCCAAG
CGTGTAATTCCGATGTTATTTGTTCGCGGGGATTGTGTTGTTCTGATATC
TCCACCGCTGCGAACATCCTGA
back to top

Coding sequence (CDS) from alignment at tig00000045_pilon:163522..163893+

>Ggra6026.t1 ID=Ggra6026.t1|Name=Ggra6026.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=285bp|location=Sequence derived from alignment at tig00000045_pilon:163522..163893+ (Gracilaria gracilis GNS1m male)
ATGACAGCTGGGACTGTAGAGCAGCCTCTTGATCTTGTTCGACTTTCTCT
GGACGAAACAATCCGAGTGAAAATGCGCGGGGATCGCGAGTTGCGGGGAA
AACTGCATGCGTTTGACCAACATCTTAACATGATTCTGGGAGAAGTGGAG
GAGACAGTCACTACTACGGATGTAGATCCAGAGACATTCGAAGAGCTGTT
GAAAACGTCCAAGCGTGTAATTCCGATGTTATTTGTTCGCGGGGATTGTG
TTGTTCTGATATCTCCACCGCTGCGAACATCCTGA
back to top