Ggra6101.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6101.t1
Unique NameGgra6101.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length478
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:543926..545359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG148CT
Preferred nameDXR
PFAMsDXPR_C,DXP_redisom_C,DXP_reductoisom
Max annot lvl2759|Eukaryota
KEGG rclassRC01452
KEGG koko:K00099
KEGG ReactionR05688
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576
Evalue1.42e-170
EggNOG OGsCOG0020@1|root,2QPJ7@2759|Eukaryota
EC1.1.1.267
Description1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6101Ggra6101Gracilaria gracilis GNS1m malegenetig00000045_pilon 543926..545359 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6101.t1.stop1Ggra6101.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 543926..543928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6101.t1.CDS1Ggra6101.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 543926..545359 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6101.t1.exon1Ggra6101.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 543926..545359 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6101.t1.start1Ggra6101.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 545357..545359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6101.t1Ggra6101.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 543926..545359 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6101.t1 ID=Ggra6101.t1|Name=Ggra6101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=478bp
MPAFIQLPSSALFPLAPRSSFISRTHHVTNHRHKPTARRHCQLLQVTAAL
QQGAAPVGTDNALREAVRRATEEGNSFSRRISVLGSTGSIGTQTLDLVRE
APQFFSVASLSAGSNVDLLVEQAREFSPDMVCILDETRAAELRQKLNEAG
CSAVKVAAGKDGVVQAAADTDAQVVVTGIVGCAGLLPTVAAIRAGKDIAL
ANKETLIAGGPVVVPLVKEYGISMTAADSEHSAIFQCLQGAPSKALRRII
LTASGGAFRDWKAADLHKVTLADALKHPNWSMGAKITIDSASLYNKAAEV
IEAHYLFGADYEHIDAVIHKQSIIHSLVEFEDSSVLAQLGWPDMRLPLLY
AISWPHRIAMPSFKPLDLVQVGSLTFQEVDREKYPNMDLAYVAGRKAGTM
TCVLNAANEAAVEMFREEKIHFLDIPRINQAMMEMHNEHFIQAPTLDEIV
HFDQVTRTYAREYVSSGKLEQTFATLQ*
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spliced messenger RNA

>Ggra6101.t1 ID=Ggra6101.t1|Name=Ggra6101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000045_pilon:543926..545359- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCGTTTATTCAACTACCGTCATCTGCACTGTTTCCCCTCGCACC
TCGGAGCTCGTTCATCTCACGGACACACCATGTCACTAACCATCGCCACA
AACCCACCGCACGCCGACACTGCCAACTACTTCAAGTCACAGCCGCCCTA
CAACAAGGAGCCGCCCCCGTCGGCACCGACAATGCGCTTCGAGAGGCCGT
ACGCCGCGCAACCGAAGAAGGCAACTCCTTTTCCCGTCGCATCTCGGTGC
TCGGCTCCACCGGCTCCATCGGCACACAAACACTCGACCTCGTTCGAGAA
GCGCCTCAGTTCTTCTCCGTCGCTTCACTGTCAGCAGGCTCCAATGTTGA
TCTTCTCGTAGAACAAGCGCGTGAGTTTTCCCCAGATATGGTGTGTATTT
TGGATGAGACACGAGCTGCAGAGTTGCGTCAGAAGTTGAACGAAGCGGGT
TGCTCTGCTGTCAAAGTGGCTGCTGGAAAGGATGGCGTTGTGCAGGCTGC
CGCCGACACCGATGCTCAAGTCGTTGTCACTGGCATTGTGGGCTGTGCGG
GATTGTTGCCGACCGTTGCTGCCATTCGCGCTGGGAAGGACATAGCACTG
GCAAATAAAGAAACTCTCATTGCCGGCGGACCAGTTGTTGTTCCCCTCGT
CAAGGAGTACGGCATAAGCATGACCGCCGCGGATTCTGAACATTCGGCCA
TTTTTCAATGTCTGCAAGGCGCGCCTTCGAAAGCTCTCCGCCGCATCATA
TTAACTGCGTCCGGTGGAGCTTTCCGCGATTGGAAGGCTGCGGATCTGCA
CAAGGTTACACTTGCTGACGCTTTGAAGCATCCCAACTGGAGCATGGGCG
CCAAGATTACTATTGACTCCGCAAGTTTGTACAACAAGGCTGCTGAGGTT
ATCGAGGCACATTATCTCTTTGGAGCAGACTATGAGCACATCGACGCTGT
CATTCACAAGCAGTCAATCATTCATTCCCTCGTGGAGTTTGAAGATTCGT
CTGTTCTAGCACAGCTAGGCTGGCCGGATATGCGTTTACCGCTCTTGTAC
GCTATTTCATGGCCGCACCGAATCGCAATGCCGTCGTTCAAACCACTGGA
CCTCGTTCAAGTCGGTTCCTTAACCTTCCAGGAAGTAGACAGAGAGAAAT
ATCCAAACATGGATTTGGCGTATGTCGCCGGGCGGAAAGCAGGTACTATG
ACCTGTGTTTTGAATGCCGCTAATGAAGCCGCTGTGGAAATGTTCCGGGA
AGAAAAGATTCACTTCCTTGACATTCCGAGAATTAATCAAGCCATGATGG
AAATGCACAATGAACATTTCATTCAAGCGCCCACACTTGATGAAATTGTA
CATTTCGACCAAGTAACGAGAACTTATGCCAGAGAGTACGTATCTTCCGG
CAAGCTGGAGCAAACTTTTGCCACCCTGCAGTAG
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protein sequence of Ggra6101.t1

>Ggra6101.t1 ID=Ggra6101.t1|Name=Ggra6101.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=478bp
MPAFIQLPSSALFPLAPRSSFISRTHHVTNHRHKPTARRHCQLLQVTAAL
QQGAAPVGTDNALREAVRRATEEGNSFSRRISVLGSTGSIGTQTLDLVRE
APQFFSVASLSAGSNVDLLVEQAREFSPDMVCILDETRAAELRQKLNEAG
CSAVKVAAGKDGVVQAAADTDAQVVVTGIVGCAGLLPTVAAIRAGKDIAL
ANKETLIAGGPVVVPLVKEYGISMTAADSEHSAIFQCLQGAPSKALRRII
LTASGGAFRDWKAADLHKVTLADALKHPNWSMGAKITIDSASLYNKAAEV
IEAHYLFGADYEHIDAVIHKQSIIHSLVEFEDSSVLAQLGWPDMRLPLLY
AISWPHRIAMPSFKPLDLVQVGSLTFQEVDREKYPNMDLAYVAGRKAGTM
TCVLNAANEAAVEMFREEKIHFLDIPRINQAMMEMHNEHFIQAPTLDEIV
HFDQVTRTYAREYVSSGKLEQTFATLQ*
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mRNA from alignment at tig00000045_pilon:543926..545359-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6101.t1 ID=Ggra6101.t1|Name=Ggra6101.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000045_pilon:543926..545359- (Gracilaria gracilis GNS1m male)
ATGCCGGCGTTTATTCAACTACCGTCATCTGCACTGTTTCCCCTCGCACC
TCGGAGCTCGTTCATCTCACGGACACACCATGTCACTAACCATCGCCACA
AACCCACCGCACGCCGACACTGCCAACTACTTCAAGTCACAGCCGCCCTA
CAACAAGGAGCCGCCCCCGTCGGCACCGACAATGCGCTTCGAGAGGCCGT
ACGCCGCGCAACCGAAGAAGGCAACTCCTTTTCCCGTCGCATCTCGGTGC
TCGGCTCCACCGGCTCCATCGGCACACAAACACTCGACCTCGTTCGAGAA
GCGCCTCAGTTCTTCTCCGTCGCTTCACTGTCAGCAGGCTCCAATGTTGA
TCTTCTCGTAGAACAAGCGCGTGAGTTTTCCCCAGATATGGTGTGTATTT
TGGATGAGACACGAGCTGCAGAGTTGCGTCAGAAGTTGAACGAAGCGGGT
TGCTCTGCTGTCAAAGTGGCTGCTGGAAAGGATGGCGTTGTGCAGGCTGC
CGCCGACACCGATGCTCAAGTCGTTGTCACTGGCATTGTGGGCTGTGCGG
GATTGTTGCCGACCGTTGCTGCCATTCGCGCTGGGAAGGACATAGCACTG
GCAAATAAAGAAACTCTCATTGCCGGCGGACCAGTTGTTGTTCCCCTCGT
CAAGGAGTACGGCATAAGCATGACCGCCGCGGATTCTGAACATTCGGCCA
TTTTTCAATGTCTGCAAGGCGCGCCTTCGAAAGCTCTCCGCCGCATCATA
TTAACTGCGTCCGGTGGAGCTTTCCGCGATTGGAAGGCTGCGGATCTGCA
CAAGGTTACACTTGCTGACGCTTTGAAGCATCCCAACTGGAGCATGGGCG
CCAAGATTACTATTGACTCCGCAAGTTTGTACAACAAGGCTGCTGAGGTT
ATCGAGGCACATTATCTCTTTGGAGCAGACTATGAGCACATCGACGCTGT
CATTCACAAGCAGTCAATCATTCATTCCCTCGTGGAGTTTGAAGATTCGT
CTGTTCTAGCACAGCTAGGCTGGCCGGATATGCGTTTACCGCTCTTGTAC
GCTATTTCATGGCCGCACCGAATCGCAATGCCGTCGTTCAAACCACTGGA
CCTCGTTCAAGTCGGTTCCTTAACCTTCCAGGAAGTAGACAGAGAGAAAT
ATCCAAACATGGATTTGGCGTATGTCGCCGGGCGGAAAGCAGGTACTATG
ACCTGTGTTTTGAATGCCGCTAATGAAGCCGCTGTGGAAATGTTCCGGGA
AGAAAAGATTCACTTCCTTGACATTCCGAGAATTAATCAAGCCATGATGG
AAATGCACAATGAACATTTCATTCAAGCGCCCACACTTGATGAAATTGTA
CATTTCGACCAAGTAACGAGAACTTATGCCAGAGAGTACGTATCTTCCGG
CAAGCTGGAGCAAACTTTTGCCACCCTGCAGTAG
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Coding sequence (CDS) from alignment at tig00000045_pilon:543926..545359-

>Ggra6101.t1 ID=Ggra6101.t1|Name=Ggra6101.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1434bp|location=Sequence derived from alignment at tig00000045_pilon:543926..545359- (Gracilaria gracilis GNS1m male)
ATGCCGGCGTTTATTCAACTACCGTCATCTGCACTGTTTCCCCTCGCACC
TCGGAGCTCGTTCATCTCACGGACACACCATGTCACTAACCATCGCCACA
AACCCACCGCACGCCGACACTGCCAACTACTTCAAGTCACAGCCGCCCTA
CAACAAGGAGCCGCCCCCGTCGGCACCGACAATGCGCTTCGAGAGGCCGT
ACGCCGCGCAACCGAAGAAGGCAACTCCTTTTCCCGTCGCATCTCGGTGC
TCGGCTCCACCGGCTCCATCGGCACACAAACACTCGACCTCGTTCGAGAA
GCGCCTCAGTTCTTCTCCGTCGCTTCACTGTCAGCAGGCTCCAATGTTGA
TCTTCTCGTAGAACAAGCGCGTGAGTTTTCCCCAGATATGGTGTGTATTT
TGGATGAGACACGAGCTGCAGAGTTGCGTCAGAAGTTGAACGAAGCGGGT
TGCTCTGCTGTCAAAGTGGCTGCTGGAAAGGATGGCGTTGTGCAGGCTGC
CGCCGACACCGATGCTCAAGTCGTTGTCACTGGCATTGTGGGCTGTGCGG
GATTGTTGCCGACCGTTGCTGCCATTCGCGCTGGGAAGGACATAGCACTG
GCAAATAAAGAAACTCTCATTGCCGGCGGACCAGTTGTTGTTCCCCTCGT
CAAGGAGTACGGCATAAGCATGACCGCCGCGGATTCTGAACATTCGGCCA
TTTTTCAATGTCTGCAAGGCGCGCCTTCGAAAGCTCTCCGCCGCATCATA
TTAACTGCGTCCGGTGGAGCTTTCCGCGATTGGAAGGCTGCGGATCTGCA
CAAGGTTACACTTGCTGACGCTTTGAAGCATCCCAACTGGAGCATGGGCG
CCAAGATTACTATTGACTCCGCAAGTTTGTACAACAAGGCTGCTGAGGTT
ATCGAGGCACATTATCTCTTTGGAGCAGACTATGAGCACATCGACGCTGT
CATTCACAAGCAGTCAATCATTCATTCCCTCGTGGAGTTTGAAGATTCGT
CTGTTCTAGCACAGCTAGGCTGGCCGGATATGCGTTTACCGCTCTTGTAC
GCTATTTCATGGCCGCACCGAATCGCAATGCCGTCGTTCAAACCACTGGA
CCTCGTTCAAGTCGGTTCCTTAACCTTCCAGGAAGTAGACAGAGAGAAAT
ATCCAAACATGGATTTGGCGTATGTCGCCGGGCGGAAAGCAGGTACTATG
ACCTGTGTTTTGAATGCCGCTAATGAAGCCGCTGTGGAAATGTTCCGGGA
AGAAAAGATTCACTTCCTTGACATTCCGAGAATTAATCAAGCCATGATGG
AAATGCACAATGAACATTTCATTCAAGCGCCCACACTTGATGAAATTGTA
CATTTCGACCAAGTAACGAGAACTTATGCCAGAGAGTACGTATCTTCCGG
CAAGCTGGAGCAAACTTTTGCCACCCTGCAGTAG
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