Ggra6060.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6060.t1
Unique Name	Ggra6060.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	732

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:406266..408557 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6060	Ggra6060	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 406266..408557 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6060.t1	Ggra6060.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 406266..408557 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6060.t1.start1	Ggra6060.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 406266..406268 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6060.t1.CDS1	Ggra6060.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 406266..406649 +
Ggra6060.t1.CDS2	Ggra6060.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 406746..408557 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6060.t1.exon1	Ggra6060.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 406266..406649 +
Ggra6060.t1.exon2	Ggra6060.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 406746..408557 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6060.t1.intron1	Ggra6060.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000045_pilon 406650..406745 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6060.t1.stop1	Ggra6060.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 408555..408557 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:406266..408557+
coding sequence from alignment at tig00000045_pilon:406266..408557+

mRNA sequence

>Ggra6060.t1 ID=Ggra6060.t1|Name=Ggra6060.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp
MVDKARTRGTQPRKKPVGKKKKLGEDNRGSTRVAAKTTPRHSPAARANHG
PNPTVGHRYSRRKGTSANTSDVRQSRPSPSSPTRSTGNVERNPNFEGIAP
VPKARELADSLTRDIVEKARVSEEEQEHTRRASTATLKPRRVGIQRVGRG
NPRNSNLSGRKRLREENSERREADTADNADSAGDEITPVYRAMKRTLTST
VPRRTEVDGVQGTREVHEVEEEEEEHRGTVEKEITSSGNHRDLLKEINSL
KAKVKKLEEDLMIRGILVKVAQEQSTALKTKLDEKELVIEGLRGALKQEG
SNTSRTGEPGRTGRRKHRIAVSDAFRGVARGVYHNMLTWARRETSELCFE
GEKPSRNWINRAEKLEGATGNGEGIIRDEGDGVAMVPKNPVELLASFGMF
TPSVEGGADALLKTMVQSELKEVSWEGIRQASLTERCTLEVCADMCLRQR
MKQTLSDVVGVRKRNTRDKLFLLLGYDLIWRRTKVVEENADEVEQQLREA
QENILRLGANGTPTTSWWRKAPLDRLKYSKAENDGDEMDTNDQDLFFRNT
VGVEVLKEFIGYDVEDKEEGTLVDGTILTLARLDAWILTVVTLVTAQSPR
GGQRQKQFAKKYAELLPLCLKELLEDVRQHVQRGHSSEFHHYGSAAHEWT
GVLGNDMREATIAFRMPSSGKIYLTLRERFFVENVSKRLGSVTDCFIGEC
EERDMDFKEMGFGSSTPLGRGLQRGENEQEE*

spliced messenger RNA

>Ggra6060.t1 ID=Ggra6060.t1|Name=Ggra6060.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2196bp|location=Sequence derived from alignment at tig00000045_pilon:406266..408557+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggtggacaaggcaagaacgcggggcacccagccgcgcaagaagcctgt
agggaagaagaagaaacttggtgaggataacagaggttcaacacgagtgg
ctgctaagacaacgccacgtcactcacctgcagcgagggccaaccatggg
cctaaccccaccgttggtcaccgctattctcgccgcaaaggtacctctgc
gaacactagcgatgtacgtcaaagcaggccatcgccgagctccccaacgc
ggtccactggcaacgttgagcgaaatcccaactttgaaggtattgcaccc
gttccgaaagctcgagaactggcagattcgttgacaagggatattgtgga
aaaggctcgagtttcagaagaggaacaagagcatacgcgaagggcatcta
cagctacattgaagccccgaagggtcggcatacagcgggtgggaagggga
aaccctcggaactcgaatttgtcggggcgaaaaaggctcagagaggagaa
ctctgagcggcgtgaggctgacactgcggacaatgcggatagtgcagggg
atgaaataacaccagtatatcgtgcaatgaagaggactctaacctctact
gttccacgaagaacagaagtagatggagtacagggaacaagggaggtaca
tgaagtggaggaggaggaggaagaacacaggggaactgtcgagaaagaaa
tcacgtcttctggaaaccatagagatttgctgaaagaaatcaatagctta
aaagcaaaggtgaagaagttggaggaggatttgatgatacggggaatcct
tgtaaaggttgcgcaagagcagagcacagccttgaagactaagcttgacg
agaaagaactggtgattgaagggttacgtggagcattgaagcaggagggc
agtaacacttcccgtaccggtgaacccggccgaaccggacgaaggaagca
tcgaatcgctgtaagcgatgcgtttcgaggggttgcgcgaggagtgtatc
acaatatgttgacttgggccaggagagagaccagtgaactgtgttttgaa
ggtgagaaaccttcaaggaattggatcaatcgagctgagaaattggaggg
agcgacggggaatggagaaggaataattcgagacgagggggatggtgtcg
cgatggttcccaagaatcctgtggagctcctcgccagtttcggtatgttt
acaccatctgttgaaggtggtgcggatgcgctgctgaagactatggtaca
gagtgagttgaaagaagtgagttgggaaggaattagacaggcctctctca
cagaaagatgcacgttagaagtgtgtgcggatatgtgtctaaggcagaga
atgaagcagacattgagtgacgttgtgggggtgcgaaagagaaatacaag
ggataaattgtttttgttgttgggttatgatctaatatggagaagaacga
aagtggtggaagaaaatgccgatgaagttgaacagcagctgagggaagca
caagagaacatcttgcgacttggtgcgaatggaacccccaccacgtcatg
gtggcggaaagctccgcttgatcgtctgaagtactcgaaggctgagaatg
acggggatgaaatggatacgaacgaccaggacttgtttttcagaaacacc
gtaggcgtagaagtgttgaaggagttcattgggtatgatgttgaggataa
agaagaagggacattagtggatggcacgatactcacacttgcacgcttag
acgcctggattctgaccgttgtcactcttgttactgctcaatctccgaga
ggtgggcaaaggcagaaacagttcgcgaagaagtatgctgagttattacc
tctctgtttgaaagagttgttggaagatgtgcggcaacatgtacagagag
gtcattccagcgagttccatcactatgggagtgcagcacatgaatggact
ggagtgctggggaatgatatgagggaggctacgatagcgtttcgaatgcc
atcgagcggaaagatatacctaacgttgcgtgaacgtttcttcgttgaga
atgtgagcaagagattggggtctgttacagattgttttatcggagagtgt
gaggaaagggacatggatttcaaggagatgggttttggaagtagcacacc
actggggagaggattgcaacgtggggaaaatgaacaagaagaatga

protein sequence of Ggra6060.t1

>Ggra6060.t1 ID=Ggra6060.t1|Name=Ggra6060.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=732bp
MVDKARTRGTQPRKKPVGKKKKLGEDNRGSTRVAAKTTPRHSPAARANHG
PNPTVGHRYSRRKGTSANTSDVRQSRPSPSSPTRSTGNVERNPNFEGIAP
VPKARELADSLTRDIVEKARVSEEEQEHTRRASTATLKPRRVGIQRVGRG
NPRNSNLSGRKRLREENSERREADTADNADSAGDEITPVYRAMKRTLTST
VPRRTEVDGVQGTREVHEVEEEEEEHRGTVEKEITSSGNHRDLLKEINSL
KAKVKKLEEDLMIRGILVKVAQEQSTALKTKLDEKELVIEGLRGALKQEG
SNTSRTGEPGRTGRRKHRIAVSDAFRGVARGVYHNMLTWARRETSELCFE
GEKPSRNWINRAEKLEGATGNGEGIIRDEGDGVAMVPKNPVELLASFGMF
TPSVEGGADALLKTMVQSELKEVSWEGIRQASLTERCTLEVCADMCLRQR
MKQTLSDVVGVRKRNTRDKLFLLLGYDLIWRRTKVVEENADEVEQQLREA
QENILRLGANGTPTTSWWRKAPLDRLKYSKAENDGDEMDTNDQDLFFRNT
VGVEVLKEFIGYDVEDKEEGTLVDGTILTLARLDAWILTVVTLVTAQSPR
GGQRQKQFAKKYAELLPLCLKELLEDVRQHVQRGHSSEFHHYGSAAHEWT
GVLGNDMREATIAFRMPSSGKIYLTLRERFFVENVSKRLGSVTDCFIGEC
EERDMDFKEMGFGSSTPLGRGLQRGENEQEE*

mRNA from alignment at tig00000045_pilon:406266..408557+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6060.t1 ID=Ggra6060.t1|Name=Ggra6060.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2292bp|location=Sequence derived from alignment at tig00000045_pilon:406266..408557+ (Gracilaria gracilis GNS1m male)
atggtggacaaggcaagaacgcggggcacccagccgcgcaagaagcctgt
agggaagaagaagaaacttggtgaggataacagaggttcaacacgagtgg
ctgctaagacaacgccacgtcactcacctgcagcgagggccaaccatggg
cctaaccccaccgttggtcaccgctattctcgccgcaaaggtacctctgc
gaacactagcgatgtacgtcaaagcaggccatcgccgagctccccaacgc
ggtccactggcaacgttgagcgaaatcccaactttgaaggtattgcaccc
gttccgaaagctcgagaactggcagattcgttgacaagggatattgtgga
aaaggctcgagtttcagaagaggaacaagagcatgtccgtgtgtctgaac
tggaaagtagtcccactgcaagagacctacaacggagtgtgggcgatccc
acaaccattccacagccatcaccattttagacgcgaagggcatctacagc
tacattgaagccccgaagggtcggcatacagcgggtgggaaggggaaacc
ctcggaactcgaatttgtcggggcgaaaaaggctcagagaggagaactct
gagcggcgtgaggctgacactgcggacaatgcggatagtgcaggggatga
aataacaccagtatatcgtgcaatgaagaggactctaacctctactgttc
cacgaagaacagaagtagatggagtacagggaacaagggaggtacatgaa
gtggaggaggaggaggaagaacacaggggaactgtcgagaaagaaatcac
gtcttctggaaaccatagagatttgctgaaagaaatcaatagcttaaaag
caaaggtgaagaagttggaggaggatttgatgatacggggaatccttgta
aaggttgcgcaagagcagagcacagccttgaagactaagcttgacgagaa
agaactggtgattgaagggttacgtggagcattgaagcaggagggcagta
acacttcccgtaccggtgaacccggccgaaccggacgaaggaagcatcga
atcgctgtaagcgatgcgtttcgaggggttgcgcgaggagtgtatcacaa
tatgttgacttgggccaggagagagaccagtgaactgtgttttgaaggtg
agaaaccttcaaggaattggatcaatcgagctgagaaattggagggagcg
acggggaatggagaaggaataattcgagacgagggggatggtgtcgcgat
ggttcccaagaatcctgtggagctcctcgccagtttcggtatgtttacac
catctgttgaaggtggtgcggatgcgctgctgaagactatggtacagagt
gagttgaaagaagtgagttgggaaggaattagacaggcctctctcacaga
aagatgcacgttagaagtgtgtgcggatatgtgtctaaggcagagaatga
agcagacattgagtgacgttgtgggggtgcgaaagagaaatacaagggat
aaattgtttttgttgttgggttatgatctaatatggagaagaacgaaagt
ggtggaagaaaatgccgatgaagttgaacagcagctgagggaagcacaag
agaacatcttgcgacttggtgcgaatggaacccccaccacgtcatggtgg
cggaaagctccgcttgatcgtctgaagtactcgaaggctgagaatgacgg
ggatgaaatggatacgaacgaccaggacttgtttttcagaaacaccgtag
gcgtagaagtgttgaaggagttcattgggtatgatgttgaggataaagaa
gaagggacattagtggatggcacgatactcacacttgcacgcttagacgc
ctggattctgaccgttgtcactcttgttactgctcaatctccgagaggtg
ggcaaaggcagaaacagttcgcgaagaagtatgctgagttattacctctc
tgtttgaaagagttgttggaagatgtgcggcaacatgtacagagaggtca
ttccagcgagttccatcactatgggagtgcagcacatgaatggactggag
tgctggggaatgatatgagggaggctacgatagcgtttcgaatgccatcg
agcggaaagatatacctaacgttgcgtgaacgtttcttcgttgagaatgt
gagcaagagattggggtctgttacagattgttttatcggagagtgtgagg
aaagggacatggatttcaaggagatgggttttggaagtagcacaccactg
gggagaggattgcaacgtggggaaaatgaacaagaagaatga

Coding sequence (CDS) from alignment at tig00000045_pilon:406266..408557+

>Ggra6060.t1 ID=Ggra6060.t1|Name=Ggra6060.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2196bp|location=Sequence derived from alignment at tig00000045_pilon:406266..408557+ (Gracilaria gracilis GNS1m male)
atggtggacaaggcaagaacgcggggcacccagccgcgcaagaagcctgt
agggaagaagaagaaacttggtgaggataacagaggttcaacacgagtgg
ctgctaagacaacgccacgtcactcacctgcagcgagggccaaccatggg
cctaaccccaccgttggtcaccgctattctcgccgcaaaggtacctctgc
gaacactagcgatgtacgtcaaagcaggccatcgccgagctccccaacgc
ggtccactggcaacgttgagcgaaatcccaactttgaaggtattgcaccc
gttccgaaagctcgagaactggcagattcgttgacaagggatattgtgga
aaaggctcgagtttcagaagaggaacaagagcatacgcgaagggcatcta
cagctacattgaagccccgaagggtcggcatacagcgggtgggaagggga
aaccctcggaactcgaatttgtcggggcgaaaaaggctcagagaggagaa
ctctgagcggcgtgaggctgacactgcggacaatgcggatagtgcagggg
atgaaataacaccagtatatcgtgcaatgaagaggactctaacctctact
gttccacgaagaacagaagtagatggagtacagggaacaagggaggtaca
tgaagtggaggaggaggaggaagaacacaggggaactgtcgagaaagaaa
tcacgtcttctggaaaccatagagatttgctgaaagaaatcaatagctta
aaagcaaaggtgaagaagttggaggaggatttgatgatacggggaatcct
tgtaaaggttgcgcaagagcagagcacagccttgaagactaagcttgacg
agaaagaactggtgattgaagggttacgtggagcattgaagcaggagggc
agtaacacttcccgtaccggtgaacccggccgaaccggacgaaggaagca
tcgaatcgctgtaagcgatgcgtttcgaggggttgcgcgaggagtgtatc
acaatatgttgacttgggccaggagagagaccagtgaactgtgttttgaa
ggtgagaaaccttcaaggaattggatcaatcgagctgagaaattggaggg
agcgacggggaatggagaaggaataattcgagacgagggggatggtgtcg
cgatggttcccaagaatcctgtggagctcctcgccagtttcggtatgttt
acaccatctgttgaaggtggtgcggatgcgctgctgaagactatggtaca
gagtgagttgaaagaagtgagttgggaaggaattagacaggcctctctca
cagaaagatgcacgttagaagtgtgtgcggatatgtgtctaaggcagaga
atgaagcagacattgagtgacgttgtgggggtgcgaaagagaaatacaag
ggataaattgtttttgttgttgggttatgatctaatatggagaagaacga
aagtggtggaagaaaatgccgatgaagttgaacagcagctgagggaagca
caagagaacatcttgcgacttggtgcgaatggaacccccaccacgtcatg
gtggcggaaagctccgcttgatcgtctgaagtactcgaaggctgagaatg
acggggatgaaatggatacgaacgaccaggacttgtttttcagaaacacc
gtaggcgtagaagtgttgaaggagttcattgggtatgatgttgaggataa
agaagaagggacattagtggatggcacgatactcacacttgcacgcttag
acgcctggattctgaccgttgtcactcttgttactgctcaatctccgaga
ggtgggcaaaggcagaaacagttcgcgaagaagtatgctgagttattacc
tctctgtttgaaagagttgttggaagatgtgcggcaacatgtacagagag
gtcattccagcgagttccatcactatgggagtgcagcacatgaatggact
ggagtgctggggaatgatatgagggaggctacgatagcgtttcgaatgcc
atcgagcggaaagatatacctaacgttgcgtgaacgtttcttcgttgaga
atgtgagcaagagattggggtctgttacagattgttttatcggagagtgt
gaggaaagggacatggatttcaaggagatgggttttggaagtagcacacc
actggggagaggattgcaacgtggggaaaatgaacaagaagaatga