Ggra2778.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2778.t1
Unique Name	Ggra2778.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	414

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:1518196..1519437 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2778	Ggra2778	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 1518196..1519437 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2778.t1.start1	Ggra2778.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 1518196..1518198 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2778.t1.CDS1	Ggra2778.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 1518196..1519437 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2778.t1.exon1	Ggra2778.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 1518196..1519437 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2778.t1.stop1	Ggra2778.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 1519435..1519437 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2778.t1	Ggra2778.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 1518196..1519437 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:1518196..1519437+
coding sequence from alignment at tig00000005_pilon:1518196..1519437+

mRNA sequence

>Ggra2778.t1 ID=Ggra2778.t1|Name=Ggra2778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MVANASTTGLAPNKGSNARAFITVPAPNRAITRRSAQNPNVSISAYVVPD
KFSKNVSNVSVSLKRNDRFMGLILKGHVADVVDLEFLQTTPRDQVHVLAT
CDTDGVVYLWFLYVATDSLGIDIGLRLLKKYSFYSLRRSTSAFYSRIRLA
GTVENGTMILVPNDGSNCRVVSFNCQTSNPKSDEQVPAIEAPPQHKYLLP
PPEDTPNDEYAAKDPALNNDIGEEQLPHQENHDAAMEANTPSGGNELAMD
RSVGMEVVPSAPNAPLSPLMDDELVPAEGKHATEALTVEPKAYAPPVQSA
THSRVDESVSEEYVDAVATVITEPEQESGEKVLAEEDKVQNVPQAEALVD
YGDLREIDGSEDEGRGEEFVDPEVEFGKTKGRMDDGYEAEGEFEAGELDR
RVDVAVGGFERGA*

spliced messenger RNA

>Ggra2778.t1 ID=Ggra2778.t1|Name=Ggra2778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000005_pilon:1518196..1519437+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCAACGCTTCTACTACCGGCCTTGCTCCGAACAAGGGCTCCAA
TGCTCGCGCCTTTATCACCGTTCCGGCGCCTAATCGCGCAATAACTCGCC
GTTCCGCTCAGAACCCCAACGTTTCTATCTCCGCCTATGTTGTGCCCGAT
AAGTTCTCCAAGAACGTTAGCAACGTATCCGTCTCTCTAAAGCGAAATGA
TCGTTTCATGGGGCTTATTTTAAAAGGACATGTGGCCGACGTAGTCGATT
TAGAGTTTTTGCAAACCACTCCACGCGACCAAGTTCATGTGTTGGCGACC
TGTGACACCGATGGCGTCGTTTATCTCTGGTTTCTTTACGTTGCTACAGA
TTCACTCGGTATTGACATTGGTTTAAGATTGCTTAAGAAGTATTCCTTCT
ATTCGTTACGCCGTTCCACGTCTGCGTTTTATTCCAGAATACGACTTGCC
GGAACCGTCGAAAATGGAACAATGATATTGGTTCCTAACGATGGCTCAAA
CTGTCGCGTCGTCTCGTTCAACTGTCAGACATCCAATCCCAAGTCCGACG
AGCAAGTCCCAGCGATTGAAGCGCCTCCACAGCACAAGTATTTGTTACCG
CCACCGGAAGACACTCCAAACGACGAATATGCCGCGAAAGACCCTGCTTT
GAACAACGACATTGGCGAAGAACAACTGCCCCACCAAGAGAACCATGACG
CCGCTATGGAAGCCAATACCCCTTCTGGCGGCAATGAACTTGCTATGGAT
CGTAGTGTGGGCATGGAAGTCGTTCCATCCGCTCCAAATGCCCCGCTGTC
ACCGCTAATGGATGACGAGTTGGTTCCTGCCGAGGGTAAGCACGCTACGG
AAGCTTTGACCGTTGAACCCAAGGCGTACGCACCACCTGTTCAAAGCGCG
ACCCATTCTAGAGTGGACGAGTCTGTGAGCGAAGAGTACGTGGATGCTGT
TGCCACCGTGATTACTGAACCGGAGCAAGAAAGCGGCGAAAAGGTTTTAG
CGGAAGAGGATAAGGTTCAGAATGTGCCCCAGGCCGAGGCGTTGGTTGAT
TATGGCGATTTGAGAGAAATTGATGGTAGCGAGGACGAGGGACGTGGAGA
GGAGTTTGTGGATCCTGAAGTGGAGTTTGGTAAGACTAAGGGTAGAATGG
ATGACGGGTATGAAGCTGAGGGAGAGTTTGAGGCGGGCGAGTTGGATAGG
AGGGTTGATGTGGCGGTTGGTGGGTTTGAACGCGGTGCTTGA

protein sequence of Ggra2778.t1

>Ggra2778.t1 ID=Ggra2778.t1|Name=Ggra2778.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MVANASTTGLAPNKGSNARAFITVPAPNRAITRRSAQNPNVSISAYVVPD
KFSKNVSNVSVSLKRNDRFMGLILKGHVADVVDLEFLQTTPRDQVHVLAT
CDTDGVVYLWFLYVATDSLGIDIGLRLLKKYSFYSLRRSTSAFYSRIRLA
GTVENGTMILVPNDGSNCRVVSFNCQTSNPKSDEQVPAIEAPPQHKYLLP
PPEDTPNDEYAAKDPALNNDIGEEQLPHQENHDAAMEANTPSGGNELAMD
RSVGMEVVPSAPNAPLSPLMDDELVPAEGKHATEALTVEPKAYAPPVQSA
THSRVDESVSEEYVDAVATVITEPEQESGEKVLAEEDKVQNVPQAEALVD
YGDLREIDGSEDEGRGEEFVDPEVEFGKTKGRMDDGYEAEGEFEAGELDR
RVDVAVGGFERGA*

mRNA from alignment at tig00000005_pilon:1518196..1519437+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2778.t1 ID=Ggra2778.t1|Name=Ggra2778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000005_pilon:1518196..1519437+ (Gracilaria gracilis GNS1m male)
ATGGTTGCCAACGCTTCTACTACCGGCCTTGCTCCGAACAAGGGCTCCAA
TGCTCGCGCCTTTATCACCGTTCCGGCGCCTAATCGCGCAATAACTCGCC
GTTCCGCTCAGAACCCCAACGTTTCTATCTCCGCCTATGTTGTGCCCGAT
AAGTTCTCCAAGAACGTTAGCAACGTATCCGTCTCTCTAAAGCGAAATGA
TCGTTTCATGGGGCTTATTTTAAAAGGACATGTGGCCGACGTAGTCGATT
TAGAGTTTTTGCAAACCACTCCACGCGACCAAGTTCATGTGTTGGCGACC
TGTGACACCGATGGCGTCGTTTATCTCTGGTTTCTTTACGTTGCTACAGA
TTCACTCGGTATTGACATTGGTTTAAGATTGCTTAAGAAGTATTCCTTCT
ATTCGTTACGCCGTTCCACGTCTGCGTTTTATTCCAGAATACGACTTGCC
GGAACCGTCGAAAATGGAACAATGATATTGGTTCCTAACGATGGCTCAAA
CTGTCGCGTCGTCTCGTTCAACTGTCAGACATCCAATCCCAAGTCCGACG
AGCAAGTCCCAGCGATTGAAGCGCCTCCACAGCACAAGTATTTGTTACCG
CCACCGGAAGACACTCCAAACGACGAATATGCCGCGAAAGACCCTGCTTT
GAACAACGACATTGGCGAAGAACAACTGCCCCACCAAGAGAACCATGACG
CCGCTATGGAAGCCAATACCCCTTCTGGCGGCAATGAACTTGCTATGGAT
CGTAGTGTGGGCATGGAAGTCGTTCCATCCGCTCCAAATGCCCCGCTGTC
ACCGCTAATGGATGACGAGTTGGTTCCTGCCGAGGGTAAGCACGCTACGG
AAGCTTTGACCGTTGAACCCAAGGCGTACGCACCACCTGTTCAAAGCGCG
ACCCATTCTAGAGTGGACGAGTCTGTGAGCGAAGAGTACGTGGATGCTGT
TGCCACCGTGATTACTGAACCGGAGCAAGAAAGCGGCGAAAAGGTTTTAG
CGGAAGAGGATAAGGTTCAGAATGTGCCCCAGGCCGAGGCGTTGGTTGAT
TATGGCGATTTGAGAGAAATTGATGGTAGCGAGGACGAGGGACGTGGAGA
GGAGTTTGTGGATCCTGAAGTGGAGTTTGGTAAGACTAAGGGTAGAATGG
ATGACGGGTATGAAGCTGAGGGAGAGTTTGAGGCGGGCGAGTTGGATAGG
AGGGTTGATGTGGCGGTTGGTGGGTTTGAACGCGGTGCTTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:1518196..1519437+

>Ggra2778.t1 ID=Ggra2778.t1|Name=Ggra2778.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000005_pilon:1518196..1519437+ (Gracilaria gracilis GNS1m male)
ATGGTTGCCAACGCTTCTACTACCGGCCTTGCTCCGAACAAGGGCTCCAA
TGCTCGCGCCTTTATCACCGTTCCGGCGCCTAATCGCGCAATAACTCGCC
GTTCCGCTCAGAACCCCAACGTTTCTATCTCCGCCTATGTTGTGCCCGAT
AAGTTCTCCAAGAACGTTAGCAACGTATCCGTCTCTCTAAAGCGAAATGA
TCGTTTCATGGGGCTTATTTTAAAAGGACATGTGGCCGACGTAGTCGATT
TAGAGTTTTTGCAAACCACTCCACGCGACCAAGTTCATGTGTTGGCGACC
TGTGACACCGATGGCGTCGTTTATCTCTGGTTTCTTTACGTTGCTACAGA
TTCACTCGGTATTGACATTGGTTTAAGATTGCTTAAGAAGTATTCCTTCT
ATTCGTTACGCCGTTCCACGTCTGCGTTTTATTCCAGAATACGACTTGCC
GGAACCGTCGAAAATGGAACAATGATATTGGTTCCTAACGATGGCTCAAA
CTGTCGCGTCGTCTCGTTCAACTGTCAGACATCCAATCCCAAGTCCGACG
AGCAAGTCCCAGCGATTGAAGCGCCTCCACAGCACAAGTATTTGTTACCG
CCACCGGAAGACACTCCAAACGACGAATATGCCGCGAAAGACCCTGCTTT
GAACAACGACATTGGCGAAGAACAACTGCCCCACCAAGAGAACCATGACG
CCGCTATGGAAGCCAATACCCCTTCTGGCGGCAATGAACTTGCTATGGAT
CGTAGTGTGGGCATGGAAGTCGTTCCATCCGCTCCAAATGCCCCGCTGTC
ACCGCTAATGGATGACGAGTTGGTTCCTGCCGAGGGTAAGCACGCTACGG
AAGCTTTGACCGTTGAACCCAAGGCGTACGCACCACCTGTTCAAAGCGCG
ACCCATTCTAGAGTGGACGAGTCTGTGAGCGAAGAGTACGTGGATGCTGT
TGCCACCGTGATTACTGAACCGGAGCAAGAAAGCGGCGAAAAGGTTTTAG
CGGAAGAGGATAAGGTTCAGAATGTGCCCCAGGCCGAGGCGTTGGTTGAT
TATGGCGATTTGAGAGAAATTGATGGTAGCGAGGACGAGGGACGTGGAGA
GGAGTTTGTGGATCCTGAAGTGGAGTTTGGTAAGACTAAGGGTAGAATGG
ATGACGGGTATGAAGCTGAGGGAGAGTTTGAGGCGGGCGAGTTGGATAGG
AGGGTTGATGTGGCGGTTGGTGGGTTTGAACGCGGTGCTTGA