Ggra6117.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6117.t1
Unique NameGgra6117.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length77
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:592829..593059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6117Ggra6117Gracilaria gracilis GNS1m malegenetig00000045_pilon 592829..593059 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6117.t1.start1Ggra6117.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 592829..592831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6117.t1.CDS1Ggra6117.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 592829..593059 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6117.t1.exon1Ggra6117.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 592829..593059 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6117.t1.stop1Ggra6117.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 593057..593059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6117.t1Ggra6117.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 592829..593059 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6117.t1 ID=Ggra6117.t1|Name=Ggra6117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=77bp
MLSRLVATLPAAASLTALMYSTQPPARYTAAAQGDLRRAEKQRAEDDDEF
GLSRFRRPPVGHTSMHSGFAVELTSF*
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spliced messenger RNA

>Ggra6117.t1 ID=Ggra6117.t1|Name=Ggra6117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp|location=Sequence derived from alignment at tig00000045_pilon:592829..593059+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCTCGTCTAGTTGCTACTTTGCCGGCCGCCGCCTCGCTCACAGC
TTTGATGTACTCCACTCAGCCGCCGGCCCGCTACACCGCCGCTGCGCAGG
GTGACCTTCGTCGCGCTGAGAAGCAGCGCGCCGAAGATGATGATGAGTTT
GGGCTAAGCAGGTTCCGAAGACCGCCGGTTGGACATACCTCCATGCACTC
GGGCTTTGCTGTCGAGCTAACTTCCTTCTAA
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protein sequence of Ggra6117.t1

>Ggra6117.t1 ID=Ggra6117.t1|Name=Ggra6117.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=77bp
MLSRLVATLPAAASLTALMYSTQPPARYTAAAQGDLRRAEKQRAEDDDEF
GLSRFRRPPVGHTSMHSGFAVELTSF*
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mRNA from alignment at tig00000045_pilon:592829..593059+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6117.t1 ID=Ggra6117.t1|Name=Ggra6117.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp|location=Sequence derived from alignment at tig00000045_pilon:592829..593059+ (Gracilaria gracilis GNS1m male)
ATGCTGTCTCGTCTAGTTGCTACTTTGCCGGCCGCCGCCTCGCTCACAGC
TTTGATGTACTCCACTCAGCCGCCGGCCCGCTACACCGCCGCTGCGCAGG
GTGACCTTCGTCGCGCTGAGAAGCAGCGCGCCGAAGATGATGATGAGTTT
GGGCTAAGCAGGTTCCGAAGACCGCCGGTTGGACATACCTCCATGCACTC
GGGCTTTGCTGTCGAGCTAACTTCCTTCTAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:592829..593059+

>Ggra6117.t1 ID=Ggra6117.t1|Name=Ggra6117.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=231bp|location=Sequence derived from alignment at tig00000045_pilon:592829..593059+ (Gracilaria gracilis GNS1m male)
ATGCTGTCTCGTCTAGTTGCTACTTTGCCGGCCGCCGCCTCGCTCACAGC
TTTGATGTACTCCACTCAGCCGCCGGCCCGCTACACCGCCGCTGCGCAGG
GTGACCTTCGTCGCGCTGAGAAGCAGCGCGCCGAAGATGATGATGAGTTT
GGGCTAAGCAGGTTCCGAAGACCGCCGGTTGGACATACCTCCATGCACTC
GGGCTTTGCTGTCGAGCTAACTTCCTTCTAA
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