Ggra6104.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6104.t1
Unique NameGgra6104.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:550222..550797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ174CT
PFAMsOTU
Max annot lvl2759|Eukaryota
KEGG koko:K18342
Evalue2.51e-47
EggNOG OGsCOG5539@1|root,KOG2606@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6104Ggra6104Gracilaria gracilis GNS1m malegenetig00000045_pilon 550222..550797 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6104.t1.stop1Ggra6104.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 550222..550224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6104.t1.CDS1Ggra6104.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 550222..550797 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6104.t1.exon1Ggra6104.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 550222..550797 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6104.t1.start1Ggra6104.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 550795..550797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6104.t1Ggra6104.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 550222..550797 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6104.t1 ID=Ggra6104.t1|Name=Ggra6104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=192bp
MNINSHRRTPVFTPVPSAPLASTFRKTTRRLIWYATAIPFATVTPPLRVV
PVRGDGRCLYRAIAKNLASSDGRRLSENLERADADALRDIAWREICVERK
KEFRAKHIIEGSHSSYCASMRNPRFYAGEPEMLALADALKRPIMVYLRTT
QGQLRNIVTYGENYSKGRFSARKIIRVLYMNGNHYDALLPR*
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spliced messenger RNA

>Ggra6104.t1 ID=Ggra6104.t1|Name=Ggra6104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000045_pilon:550222..550797- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATATCAACTCGCACCGTCGAACCCCGGTCTTCACGCCGGTCCCTTC
TGCGCCGCTTGCATCCACCTTTCGAAAGACCACTCGTCGCCTCATATGGT
ACGCCACCGCTATTCCGTTCGCCACTGTAACGCCGCCGCTGCGCGTGGTT
CCGGTGCGAGGTGACGGCCGCTGTCTTTACCGTGCCATTGCGAAGAACCT
TGCGAGCAGCGATGGTCGCCGCCTCTCGGAGAATTTGGAACGAGCAGACG
CCGATGCATTACGCGATATAGCATGGCGCGAGATTTGCGTCGAGCGCAAG
AAGGAGTTCCGCGCAAAACATATCATCGAAGGCAGCCATAGCTCCTATTG
CGCTAGCATGAGGAACCCCAGGTTCTATGCGGGTGAACCGGAGATGCTTG
CCTTGGCGGACGCGCTCAAGAGACCCATCATGGTGTACTTGCGCACCACT
CAGGGGCAGTTGCGTAATATTGTCACATATGGCGAGAACTATTCCAAGGG
AAGATTCTCAGCCCGCAAGATTATTCGCGTCTTGTACATGAACGGTAACC
ATTACGACGCACTTCTCCCAAGGTGA
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protein sequence of Ggra6104.t1

>Ggra6104.t1 ID=Ggra6104.t1|Name=Ggra6104.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MNINSHRRTPVFTPVPSAPLASTFRKTTRRLIWYATAIPFATVTPPLRVV
PVRGDGRCLYRAIAKNLASSDGRRLSENLERADADALRDIAWREICVERK
KEFRAKHIIEGSHSSYCASMRNPRFYAGEPEMLALADALKRPIMVYLRTT
QGQLRNIVTYGENYSKGRFSARKIIRVLYMNGNHYDALLPR*
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mRNA from alignment at tig00000045_pilon:550222..550797-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6104.t1 ID=Ggra6104.t1|Name=Ggra6104.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000045_pilon:550222..550797- (Gracilaria gracilis GNS1m male)
ATGAATATCAACTCGCACCGTCGAACCCCGGTCTTCACGCCGGTCCCTTC
TGCGCCGCTTGCATCCACCTTTCGAAAGACCACTCGTCGCCTCATATGGT
ACGCCACCGCTATTCCGTTCGCCACTGTAACGCCGCCGCTGCGCGTGGTT
CCGGTGCGAGGTGACGGCCGCTGTCTTTACCGTGCCATTGCGAAGAACCT
TGCGAGCAGCGATGGTCGCCGCCTCTCGGAGAATTTGGAACGAGCAGACG
CCGATGCATTACGCGATATAGCATGGCGCGAGATTTGCGTCGAGCGCAAG
AAGGAGTTCCGCGCAAAACATATCATCGAAGGCAGCCATAGCTCCTATTG
CGCTAGCATGAGGAACCCCAGGTTCTATGCGGGTGAACCGGAGATGCTTG
CCTTGGCGGACGCGCTCAAGAGACCCATCATGGTGTACTTGCGCACCACT
CAGGGGCAGTTGCGTAATATTGTCACATATGGCGAGAACTATTCCAAGGG
AAGATTCTCAGCCCGCAAGATTATTCGCGTCTTGTACATGAACGGTAACC
ATTACGACGCACTTCTCCCAAGGTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:550222..550797-

>Ggra6104.t1 ID=Ggra6104.t1|Name=Ggra6104.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=576bp|location=Sequence derived from alignment at tig00000045_pilon:550222..550797- (Gracilaria gracilis GNS1m male)
ATGAATATCAACTCGCACCGTCGAACCCCGGTCTTCACGCCGGTCCCTTC
TGCGCCGCTTGCATCCACCTTTCGAAAGACCACTCGTCGCCTCATATGGT
ACGCCACCGCTATTCCGTTCGCCACTGTAACGCCGCCGCTGCGCGTGGTT
CCGGTGCGAGGTGACGGCCGCTGTCTTTACCGTGCCATTGCGAAGAACCT
TGCGAGCAGCGATGGTCGCCGCCTCTCGGAGAATTTGGAACGAGCAGACG
CCGATGCATTACGCGATATAGCATGGCGCGAGATTTGCGTCGAGCGCAAG
AAGGAGTTCCGCGCAAAACATATCATCGAAGGCAGCCATAGCTCCTATTG
CGCTAGCATGAGGAACCCCAGGTTCTATGCGGGTGAACCGGAGATGCTTG
CCTTGGCGGACGCGCTCAAGAGACCCATCATGGTGTACTTGCGCACCACT
CAGGGGCAGTTGCGTAATATTGTCACATATGGCGAGAACTATTCCAAGGG
AAGATTCTCAGCCCGCAAGATTATTCGCGTCTTGTACATGAACGGTAACC
ATTACGACGCACTTCTCCCAAGGTGA
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